Wall clock time and date at job start Tue Mar 31 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42091 * 108.57983 * 2 1 4 4 O 1.42098 * 108.57552 * 228.97057 * 2 1 3 5 5 C 1.81399 * 101.91987 * 114.48424 * 2 1 3 6 6 C 1.53002 * 109.47162 * 179.97438 * 5 2 1 7 7 C 1.50706 * 109.46925 * 180.02562 * 6 5 2 8 8 O 1.21279 * 120.00072 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46871 * 90.00155 * 10 9 7 12 12 H 1.07998 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00011 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99586 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99962 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47167 * 60.00444 * 15 13 11 17 17 H 1.48506 * 109.46866 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47193 * 299.99997 * 15 13 11 19 19 C 1.46504 * 119.99858 * 0.02562 * 9 7 6 20 20 C 1.52999 * 109.47507 * 89.99839 * 19 9 7 21 21 C 1.53003 * 117.49748 * 243.62506 * 20 19 9 22 22 C 1.52992 * 117.50002 * 174.99956 * 20 19 9 23 23 H 1.09005 * 109.47053 * 305.51648 * 1 2 3 24 24 H 1.09001 * 109.46751 * 65.51551 * 1 2 3 25 25 H 1.08995 * 109.47102 * 185.51242 * 1 2 3 26 26 H 1.09004 * 109.47089 * 59.99889 * 5 2 1 27 27 H 1.09004 * 109.47568 * 299.99879 * 5 2 1 28 28 H 1.09000 * 109.46497 * 60.00298 * 6 5 2 29 29 H 1.09000 * 109.47312 * 300.00077 * 6 5 2 30 30 H 1.09000 * 109.47710 * 210.00590 * 10 9 7 31 31 H 1.09000 * 109.46883 * 330.00634 * 10 9 7 32 32 H 0.97008 * 119.99716 * 180.02562 * 14 13 11 33 33 H 1.09005 * 109.47121 * 209.99861 * 19 9 7 34 34 H 1.08997 * 109.47160 * 329.99513 * 19 9 7 35 35 H 1.09002 * 115.54589 * 29.32423 * 20 19 9 36 36 H 1.08995 * 117.49876 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49846 * 145.02378 * 21 20 19 38 38 H 1.09007 * 117.49671 * 214.97834 * 22 20 19 39 39 H 1.09002 * 117.50190 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 6 4.0167 -1.4312 3.1397 8 8 3.1142 -1.7674 3.8769 9 7 5.2979 -1.6056 3.5199 10 6 5.6005 -2.1997 4.8243 11 6 5.7030 -3.6966 4.6829 12 1 5.5576 -4.1590 3.7179 13 6 5.9823 -4.4757 5.7857 14 7 6.1587 -3.9126 6.9610 15 14 6.1085 -6.3312 5.6105 16 1 7.1921 -6.6652 4.6516 17 1 6.4155 -6.9334 6.9328 18 1 4.8192 -6.8698 5.1079 19 6 6.3880 -1.2000 2.6291 20 6 6.7685 0.2535 2.9176 21 6 6.5546 1.2752 1.7989 22 6 7.9712 0.8309 2.1688 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7610 -0.1170 2.4043 28 1 4.1334 0.1816 1.7466 29 1 4.1328 -1.4384 1.0090 30 1 6.5468 -1.8040 5.1932 31 1 4.8052 -1.9549 5.5284 32 1 6.3556 -4.4607 7.7368 33 1 7.2526 -1.8421 2.7972 34 1 6.0634 -1.2918 1.5926 35 1 6.6059 0.5875 3.9424 36 1 6.1433 0.9116 0.8573 37 1 6.2513 2.2815 2.0876 38 1 8.5998 1.5451 2.7009 39 1 8.4918 0.1751 1.4709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088407538.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:11 Heat of formation + Delta-G solvation = -111.052743 kcal Electronic energy + Delta-G solvation = -21518.693346 eV Core-core repulsion = 18167.644113 eV Total energy + Delta-G solvation = -3351.049234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.88853 -38.40652 -37.95598 -37.02306 -36.21543 -34.67153 -34.00773 -30.40360 -29.86304 -27.80196 -26.33568 -24.07402 -23.18024 -21.85586 -19.99972 -19.78498 -18.63921 -18.46502 -17.34728 -17.27394 -16.99711 -16.69385 -16.47882 -16.10294 -15.84777 -15.22470 -14.60143 -14.48299 -14.07863 -13.96462 -13.88394 -13.73800 -13.58140 -13.10759 -13.08313 -12.99452 -12.91744 -12.58490 -12.53725 -12.46168 -12.26781 -12.21951 -12.00184 -11.75309 -11.54601 -11.25962 -10.93494 -10.64671 -10.57043 -9.48266 -8.23069 -6.37991 -0.90869 1.36780 1.40449 1.47962 1.75925 1.87449 2.21191 2.41030 2.75500 2.95989 3.06682 3.16516 3.45766 3.69725 3.82908 3.92397 4.02419 4.15796 4.16700 4.26663 4.27781 4.41920 4.57636 4.72681 4.81467 4.85078 4.92022 5.01414 5.04232 5.07567 5.21200 5.30557 5.32953 5.54617 5.81702 6.04954 6.67147 6.75214 7.25971 7.42405 8.84008 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.004798 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.240409 B = 5834.611075 C = 7035.262844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.443 3.557 3 O -0.973 6.973 4 O -0.977 6.977 5 C -0.600 4.600 6 C -0.134 4.134 7 C 0.505 3.495 8 O -0.588 6.588 9 N -0.599 5.599 10 C 0.263 3.737 11 C -0.545 4.545 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.276 1.276 19 C 0.136 3.864 20 C -0.193 4.193 21 C -0.174 4.174 22 C -0.159 4.159 23 H 0.151 0.849 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.021 0.979 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 10.233 -15.546 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.628 3.372 3 O -0.970 6.970 4 O -0.974 6.974 5 C -0.728 4.728 6 C -0.174 4.174 7 C 0.293 3.707 8 O -0.469 6.469 9 N -0.329 5.329 10 C 0.141 3.859 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.202 1.202 19 C 0.014 3.986 20 C -0.213 4.213 21 C -0.211 4.211 22 C -0.196 4.196 23 H 0.169 0.831 24 H 0.164 0.836 25 H 0.168 0.832 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.039 0.961 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.053 10.315 -15.621 19.674 hybrid contribution -0.321 -1.277 1.393 1.917 sum -6.374 9.038 -14.228 18.021 Atomic orbital electron populations 1.30081 1.21352 1.13874 1.13652 1.07029 0.80139 0.74115 0.75895 1.93547 1.81090 1.35761 1.86582 1.93549 1.81171 1.67654 1.55063 1.30248 1.02560 1.15846 1.24128 1.21507 0.95327 1.04727 0.95824 1.20921 0.82316 0.78447 0.89032 1.90618 1.46423 1.53209 1.56681 1.48168 1.05875 1.59491 1.19351 1.18726 0.94625 0.92291 0.80220 1.21680 1.48752 0.92858 0.95025 0.92747 1.25851 0.94531 1.04042 0.94590 1.70050 1.48859 1.37734 1.00133 0.85470 0.78799 0.78832 0.77721 1.18580 1.20355 1.20186 1.21300 0.90072 0.93436 0.93819 1.22679 1.06348 0.94581 0.97645 1.23225 0.99907 0.99242 0.98717 1.23022 0.90733 1.03152 1.02699 0.83053 0.83598 0.83233 0.83925 0.83611 0.85953 0.86223 0.96130 0.98288 0.92399 0.90424 0.88312 0.89727 0.87340 0.88083 0.87951 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.86 10.62 113.37 1.20 -3.65 16 2 S 2.44 40.79 5.36 -56.49 -0.30 40.49 16 3 O -0.97 -22.44 18.10 -127.37 -2.30 -24.75 16 4 O -0.98 -23.45 18.10 -127.37 -2.30 -25.75 16 5 C -0.60 -12.69 5.09 71.98 0.37 -12.32 16 6 C -0.13 -3.69 4.26 29.85 0.13 -3.56 16 7 C 0.50 20.70 7.67 87.66 0.67 21.37 16 8 O -0.59 -29.28 15.56 -3.03 -0.05 -29.32 16 9 N -0.60 -25.62 2.46 -826.14 -2.03 -27.65 16 10 C 0.26 14.27 5.16 85.63 0.44 14.71 16 11 C -0.54 -31.45 9.39 25.60 0.24 -31.20 16 12 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 13 C 0.01 0.52 5.46 84.66 0.46 0.98 16 14 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 15 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 C 0.14 4.40 5.49 86.38 0.47 4.87 16 20 C -0.19 -5.37 5.95 -10.80 -0.06 -5.43 16 21 C -0.17 -3.69 9.18 30.60 0.28 -3.41 16 22 C -0.16 -3.33 10.25 30.59 0.31 -3.01 16 23 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.14 2.90 8.10 -2.39 -0.02 2.88 16 27 H 0.15 2.82 8.10 -2.39 -0.02 2.80 16 28 H 0.12 2.91 6.85 -2.39 -0.02 2.90 16 29 H 0.12 2.86 7.40 -2.39 -0.02 2.84 16 30 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 32 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 33 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 34 H 0.10 2.54 6.17 -2.39 -0.01 2.53 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.11 2.02 7.87 -2.39 -0.02 2.00 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -84.33 343.42 0.87 -83.46 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.03 Total: 13.32 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.52 Total: -20.67 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.74 Total: -83.61 kcal Atomic # 8 Polarization: -75.17 SS G_CDS: -4.66 Total: -79.83 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 40.79 SS G_CDS: -0.30 Total: 40.49 kcal Total: -84.33 0.87 -83.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088407538.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.596 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds