Wall clock time and date at job start Tue Mar 31 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47445 * 239.99820 * 3 2 1 5 5 H 1.48502 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47041 * 120.00077 * 3 2 1 7 7 C 1.38960 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00069 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99654 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00036 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46816 * 179.97438 * 12 10 9 14 14 C 1.46591 * 110.99940 * 169.99919 * 13 12 10 15 15 C 1.52622 * 110.41475 * 169.17203 * 14 13 12 16 16 C 1.50554 * 110.35529 * 43.81282 * 15 14 13 17 17 O 1.21287 * 120.25808 * 103.76762 * 16 15 14 18 18 N 1.34936 * 119.48237 * 283.79386 * 16 15 14 19 19 C 1.40326 * 118.41585 * 3.42866 * 18 16 15 20 20 C 1.38489 * 120.48641 * 229.22832 * 19 18 16 21 21 C 1.38314 * 119.85685 * 178.94504 * 20 19 18 22 22 C 1.38290 * 120.18124 * 359.79295 * 21 20 19 23 23 C 1.38246 * 120.28220 * 0.35027 * 22 21 20 24 24 C 1.38695 * 119.91506 * 0.41614 * 23 22 21 25 25 H 0.96995 * 119.99763 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99962 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47136 * 60.00407 * 12 10 9 28 28 H 1.08996 * 109.47431 * 300.00317 * 12 10 9 29 29 H 1.08995 * 109.31119 * 48.88102 * 14 13 12 30 30 H 1.09003 * 109.31329 * 289.45951 * 14 13 12 31 31 H 1.09003 * 109.32385 * 283.53814 * 15 14 13 32 32 H 1.09003 * 109.32385 * 164.08528 * 15 14 13 33 33 H 0.97004 * 120.79243 * 183.39736 * 18 16 15 34 34 H 1.07999 * 120.07405 * 358.97181 * 20 19 18 35 35 H 1.08002 * 119.91222 * 179.76506 * 21 20 19 36 36 H 1.08001 * 119.85566 * 180.38206 * 22 21 20 37 37 H 1.08002 * 120.03797 * 180.13309 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2102 -3.5579 -0.0022 12 6 1.2437 -4.8630 -0.0032 13 7 2.1983 -5.9795 -0.0050 14 6 1.5154 -7.2548 0.2321 15 6 2.4609 -8.4227 -0.0354 16 6 3.8144 -8.1487 0.5642 17 8 4.1493 -8.6965 1.5931 18 7 4.6518 -7.2884 -0.0518 19 6 4.1975 -6.6204 -1.1993 20 6 4.9689 -6.5950 -2.3492 21 6 4.4989 -5.9514 -3.4796 22 6 3.2598 -5.3375 -3.4655 23 6 2.4855 -5.3562 -2.3203 24 6 2.9560 -5.9856 -1.1775 25 1 -0.4849 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 0.6167 -4.9201 -0.8930 28 1 0.6173 -4.9213 0.8869 29 1 0.6529 -7.3303 -0.4299 30 1 1.1765 -7.2953 1.2673 31 1 2.5648 -8.5635 -1.1113 32 1 2.0477 -9.3296 0.4060 33 1 5.5463 -7.1350 0.2906 34 1 5.9352 -7.0771 -2.3634 35 1 5.1013 -5.9278 -4.3756 36 1 2.8952 -4.8418 -4.3530 37 1 1.5175 -4.8774 -2.3143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118846236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:39 Heat of formation + Delta-G solvation = -19.677179 kcal Electronic energy + Delta-G solvation = -23291.203808 eV Core-core repulsion = 19840.965716 eV Total energy + Delta-G solvation = -3450.238092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11465 -38.87985 -37.95304 -36.42323 -34.84564 -33.89724 -31.69334 -31.24771 -29.90831 -29.01889 -26.72295 -24.46941 -24.32222 -22.38184 -20.88781 -20.30472 -19.24217 -17.93856 -17.71549 -16.89715 -16.48622 -16.19864 -15.79123 -14.90752 -14.66724 -14.50193 -14.33103 -14.08844 -13.91584 -13.76616 -13.37766 -13.01787 -12.70127 -12.28859 -11.98179 -11.76282 -11.57199 -11.55278 -11.50808 -11.09364 -11.01740 -10.46052 -10.23780 -10.14936 -9.77501 -9.53654 -9.20460 -8.52642 -8.34012 -7.98981 -7.52032 -6.44061 -3.84639 1.40544 1.52104 2.66633 3.18359 3.24380 3.28401 3.32582 3.58750 3.86164 3.86824 4.17621 4.52124 4.69027 4.84350 4.94107 5.05036 5.16684 5.18643 5.35730 5.37793 5.45575 5.49432 5.64944 5.71684 5.76411 5.79160 5.95922 6.14742 6.34226 6.40897 6.66021 6.82045 6.86839 7.03901 7.26523 7.52861 7.53004 8.02326 8.23082 8.58426 9.15683 9.50296 10.02148 10.73588 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.004790 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.842971 B = 5844.650270 C = 6320.995232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.567 6.567 12 C 0.041 3.959 13 N -0.485 5.485 14 C 0.070 3.930 15 C -0.145 4.145 16 C 0.538 3.462 17 O -0.544 6.544 18 N -0.658 5.658 19 C 0.129 3.871 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.102 4.102 23 C -0.139 4.139 24 C 0.131 3.869 25 H 0.272 0.728 26 H 0.391 0.609 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.409 0.591 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -14.010 -6.751 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.450 6.450 12 C -0.090 4.090 13 N -0.203 5.203 14 C -0.056 4.056 15 C -0.186 4.186 16 C 0.326 3.674 17 O -0.421 6.421 18 N -0.305 5.305 19 C 0.034 3.966 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.121 4.121 23 C -0.160 4.160 24 C 0.033 3.967 25 H 0.082 0.918 26 H 0.224 0.776 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.248 0.752 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.031 -14.153 -5.770 15.418 hybrid contribution -0.376 1.200 -0.419 1.326 sum 1.655 -12.953 -6.189 14.450 Atomic orbital electron populations 1.69597 1.05906 1.28268 1.50582 1.25237 0.95616 0.99648 0.97310 0.85933 0.78786 0.80521 0.79087 1.19917 1.20957 1.19920 1.19620 0.93276 0.82117 1.47648 0.88046 1.41798 1.09085 1.04448 1.64667 1.19547 0.88476 0.84356 0.84995 1.90563 1.13392 1.86557 1.54475 1.22057 0.93751 0.90670 1.02476 1.58360 1.25366 1.03022 1.33507 1.22049 0.94773 0.85667 1.03084 1.21791 0.93330 1.00399 1.03072 1.20358 0.86279 0.77387 0.83394 1.90725 1.76928 1.51339 1.23114 1.43447 1.17628 1.42167 1.27252 1.17319 0.93475 0.98756 0.87002 1.20819 1.00073 1.01543 0.91534 1.20871 0.96433 0.99241 0.97913 1.20972 0.94487 0.98669 0.97951 1.21322 1.00738 1.01779 0.92149 1.18447 0.93868 0.96300 0.88050 0.91821 0.77553 0.92039 0.88509 0.92622 0.89075 0.89223 0.87283 0.75235 0.85716 0.85902 0.86023 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 10.09 6.78 -10.99 -0.07 10.01 16 11 O -0.57 -15.08 14.64 5.54 0.08 -15.00 16 12 C 0.04 0.69 4.96 -4.98 -0.02 0.66 16 13 N -0.48 -7.91 3.89 -172.88 -0.67 -8.58 16 14 C 0.07 0.85 5.57 -4.19 -0.02 0.83 16 15 C -0.15 -1.69 5.41 -28.15 -0.15 -1.84 16 16 C 0.54 8.21 7.04 -10.98 -0.08 8.13 16 17 O -0.54 -9.98 17.95 5.55 0.10 -9.88 16 18 N -0.66 -9.77 5.35 -9.73 -0.05 -9.83 16 19 C 0.13 1.96 5.42 -83.42 -0.45 1.51 16 20 C -0.12 -1.54 9.98 -39.46 -0.39 -1.94 16 21 C -0.13 -1.56 10.04 -39.53 -0.40 -1.96 16 22 C -0.10 -1.40 10.03 -39.56 -0.40 -1.79 16 23 C -0.14 -2.17 8.22 -39.41 -0.32 -2.50 16 24 C 0.13 2.14 3.24 -83.70 -0.27 1.87 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 27 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 28 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 29 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.94 7.32 -51.93 -0.38 0.56 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.41 5.68 8.95 -40.82 -0.37 5.31 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.95 5.77 -52.49 -0.30 1.64 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -33.76 311.07 -7.19 -40.95 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.15 Total: 13.79 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.83 Total: 5.22 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.06 Total: -55.66 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.18 Total: -24.88 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.76 -7.19 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118846236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.273 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds