Wall clock time and date at job start Tue Mar 31 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47445 * 239.99820 * 3 2 1 5 5 H 1.48502 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47041 * 120.00077 * 3 2 1 7 7 C 1.38960 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00069 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99654 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00036 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46816 * 179.97438 * 12 10 9 14 14 C 1.46591 * 110.99940 * 169.99919 * 13 12 10 15 15 C 1.52622 * 110.41475 * 169.17203 * 14 13 12 16 16 C 1.50554 * 110.35529 * 43.81282 * 15 14 13 17 17 O 1.21287 * 120.25808 * 103.76762 * 16 15 14 18 18 N 1.34936 * 119.48237 * 283.79386 * 16 15 14 19 19 C 1.40326 * 118.41585 * 3.42866 * 18 16 15 20 20 C 1.38489 * 120.48641 * 229.22832 * 19 18 16 21 21 C 1.38314 * 119.85685 * 178.94504 * 20 19 18 22 22 C 1.38290 * 120.18124 * 359.79295 * 21 20 19 23 23 C 1.38246 * 120.28220 * 0.35027 * 22 21 20 24 24 C 1.38695 * 119.91506 * 0.41614 * 23 22 21 25 25 H 0.96995 * 119.99763 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99962 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47136 * 60.00407 * 12 10 9 28 28 H 1.08996 * 109.47431 * 300.00317 * 12 10 9 29 29 H 1.08995 * 109.31119 * 48.88102 * 14 13 12 30 30 H 1.09003 * 109.31329 * 289.45951 * 14 13 12 31 31 H 1.09003 * 109.32385 * 283.53814 * 15 14 13 32 32 H 1.09003 * 109.32385 * 164.08528 * 15 14 13 33 33 H 0.97004 * 120.79243 * 183.39736 * 18 16 15 34 34 H 1.07999 * 120.07405 * 358.97181 * 20 19 18 35 35 H 1.08002 * 119.91222 * 179.76506 * 21 20 19 36 36 H 1.08001 * 119.85566 * 180.38206 * 22 21 20 37 37 H 1.08002 * 120.03797 * 180.13309 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2102 -3.5579 -0.0022 12 6 1.2437 -4.8630 -0.0032 13 7 2.1983 -5.9795 -0.0050 14 6 1.5154 -7.2548 0.2321 15 6 2.4609 -8.4227 -0.0354 16 6 3.8144 -8.1487 0.5642 17 8 4.1493 -8.6965 1.5931 18 7 4.6518 -7.2884 -0.0518 19 6 4.1975 -6.6204 -1.1993 20 6 4.9689 -6.5950 -2.3492 21 6 4.4989 -5.9514 -3.4796 22 6 3.2598 -5.3375 -3.4655 23 6 2.4855 -5.3562 -2.3203 24 6 2.9560 -5.9856 -1.1775 25 1 -0.4849 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0016 27 1 0.6167 -4.9201 -0.8930 28 1 0.6173 -4.9213 0.8869 29 1 0.6529 -7.3303 -0.4299 30 1 1.1765 -7.2953 1.2673 31 1 2.5648 -8.5635 -1.1113 32 1 2.0477 -9.3296 0.4060 33 1 5.5463 -7.1350 0.2906 34 1 5.9352 -7.0771 -2.3634 35 1 5.1013 -5.9278 -4.3756 36 1 2.8952 -4.8418 -4.3530 37 1 1.5175 -4.8774 -2.3143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118846236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:38 Heat of formation + Delta-G solvation = -44.966182 kcal Electronic energy + Delta-G solvation = -23292.300422 eV Core-core repulsion = 19840.965716 eV Total energy + Delta-G solvation = -3451.334705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25294 -40.31826 -39.40380 -37.65719 -36.06157 -35.81039 -33.27340 -32.70034 -31.00115 -30.22435 -28.16669 -26.15506 -25.45592 -23.50391 -22.07482 -21.40421 -20.92115 -19.87579 -18.85029 -17.98838 -17.91083 -17.50069 -17.07223 -16.46290 -16.13580 -15.88348 -15.62825 -15.45701 -15.14099 -15.11091 -14.73354 -14.33948 -14.02168 -13.55722 -13.47558 -13.11677 -12.99368 -12.79010 -12.62961 -12.56961 -12.41996 -12.14182 -12.09936 -11.48729 -11.33119 -10.93025 -10.33904 -10.30724 -9.98379 -9.48337 -8.66791 -8.44849 -5.92662 0.31612 0.46188 1.39217 1.41509 1.51544 1.52071 2.07878 2.24209 2.25782 2.50059 2.79207 3.21792 3.27561 3.51319 3.78097 3.93750 4.01971 4.15080 4.20013 4.34489 4.46275 4.47840 4.53565 4.59947 4.64545 4.70427 4.78513 4.94836 5.24049 5.36880 5.42342 5.61427 5.68170 5.80913 5.91276 6.04373 6.14377 6.40801 6.62605 7.08573 7.15386 7.58279 8.14865 8.72095 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.004790 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.842971 B = 5844.650270 C = 6320.995232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.328 4.328 8 H 0.075 0.925 9 N -0.573 5.573 10 C 0.443 3.557 11 O -0.608 6.608 12 C 0.052 3.948 13 N -0.507 5.507 14 C 0.067 3.933 15 C -0.137 4.137 16 C 0.530 3.470 17 O -0.584 6.584 18 N -0.658 5.658 19 C 0.109 3.891 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.161 4.161 24 C 0.115 3.885 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.408 0.592 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -14.498 -7.974 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.093 0.907 9 N -0.211 5.211 10 C 0.230 3.770 11 O -0.493 6.493 12 C -0.078 4.078 13 N -0.226 5.226 14 C -0.057 4.057 15 C -0.177 4.177 16 C 0.320 3.680 17 O -0.464 6.464 18 N -0.304 5.304 19 C 0.015 3.985 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.128 4.128 23 C -0.182 4.182 24 C 0.017 3.983 25 H 0.086 0.914 26 H 0.230 0.770 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.158 0.842 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.543 -14.649 -7.014 16.315 hybrid contribution -0.173 1.315 -0.077 1.328 sum 1.370 -13.334 -7.091 15.164 Atomic orbital electron populations 1.69652 1.06666 1.29226 1.50504 1.25932 0.96475 1.02094 0.96475 0.85069 0.77830 0.77129 0.78801 1.19694 1.19470 1.20154 1.19527 0.92465 0.83984 1.49754 0.90696 1.41843 1.09204 1.04487 1.65545 1.20550 0.88304 0.85734 0.82388 1.90530 1.15562 1.87545 1.55613 1.21922 0.93424 0.87737 1.04724 1.58366 1.25916 1.04243 1.34058 1.22200 0.95492 0.83861 1.04164 1.21822 0.91026 1.01059 1.03805 1.21043 0.87412 0.76662 0.82891 1.90699 1.77955 1.52880 1.24897 1.43522 1.17679 1.41890 1.27305 1.17551 0.93751 0.99604 0.87644 1.21173 1.00672 1.00914 0.90919 1.21261 0.96135 0.97935 0.98854 1.21302 0.94887 0.98536 0.98047 1.21427 1.01200 1.02664 0.92956 1.18619 0.94444 0.97018 0.88217 0.91369 0.77025 0.89317 0.86446 0.89509 0.88613 0.87854 0.84995 0.75349 0.83275 0.82695 0.84250 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.67 0.28 -48.46 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 9 N -0.57 -28.49 5.29 -306.98 -1.62 -30.12 16 10 C 0.44 20.38 6.78 87.66 0.59 20.97 16 11 O -0.61 -32.97 14.64 -3.08 -0.05 -33.02 16 12 C 0.05 1.69 4.96 85.56 0.42 2.11 16 13 N -0.51 -15.93 3.89 -700.86 -2.73 -18.65 16 14 C 0.07 1.49 5.57 86.24 0.48 1.97 16 15 C -0.14 -2.92 5.41 29.68 0.16 -2.75 16 16 C 0.53 15.88 7.04 87.59 0.62 16.49 16 17 O -0.58 -21.50 17.95 -3.05 -0.05 -21.56 16 18 N -0.66 -19.33 5.35 -302.98 -1.62 -20.96 16 19 C 0.11 3.20 5.42 38.13 0.21 3.41 16 20 C -0.12 -2.80 9.98 22.35 0.22 -2.58 16 21 C -0.12 -2.76 10.04 22.30 0.22 -2.53 16 22 C -0.11 -2.80 10.03 22.28 0.22 -2.58 16 23 C -0.16 -4.88 8.22 22.38 0.18 -4.70 16 24 C 0.11 3.62 3.24 38.31 0.12 3.75 16 25 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 27 H 0.09 2.41 6.18 -2.39 -0.01 2.40 16 28 H 0.12 3.32 8.08 -2.39 -0.02 3.30 16 29 H 0.09 1.40 8.06 -2.39 -0.02 1.39 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 1.92 7.32 -2.39 -0.02 1.90 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 11.47 8.95 -92.70 -0.83 10.64 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.12 3.65 5.77 -2.91 -0.02 3.63 16 Total: -1.00 -74.12 311.07 0.55 -73.56 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.43 Total: 38.46 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 4.74 Total: 16.00 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.69 Total: -118.18 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.10 Total: -54.57 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.12 0.55 -73.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118846236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.597 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds