Wall clock time and date at job start Tue Mar 31 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 5 5 C 1.50703 * 109.47219 * 269.99493 * 4 3 2 6 6 H 1.07996 * 119.99587 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99655 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99994 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46889 * 90.00281 * 9 7 5 11 11 H 1.48510 * 109.46825 * 210.00042 * 9 7 5 12 12 H 1.48494 * 109.47200 * 329.99914 * 9 7 5 13 13 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 14 14 O 1.21274 * 119.99897 * 179.73022 * 13 3 2 15 15 C 1.50695 * 119.99635 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.46874 * 180.02562 * 15 13 3 17 17 C 1.35520 * 119.47354 * 269.72869 * 16 15 13 18 18 C 1.35689 * 121.22339 * 179.75692 * 17 16 15 19 19 C 1.39550 * 120.13732 * 0.51794 * 18 17 16 20 20 C 1.39264 * 118.96773 * 359.74205 * 19 18 17 21 21 C 1.43193 * 120.58615 * 180.02562 * 20 19 18 22 22 N 8.36235 * 78.31928 * 48.69915 * 2 1 3 23 23 C 1.34653 * 119.47749 * 89.99991 * 16 15 13 24 24 O 1.21904 * 120.10758 * 359.95465 * 23 16 15 25 25 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 27 27 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 28 28 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 29 29 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 4 3 2 31 31 H 1.09008 * 109.47058 * 150.00274 * 4 3 2 32 32 H 0.97008 * 119.99482 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47403 * 300.00056 * 15 13 3 34 34 H 1.09002 * 109.47422 * 60.00295 * 15 13 3 35 35 H 1.08002 * 119.39007 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.93162 * 180.27743 * 18 17 16 37 37 H 1.07991 * 120.51783 * 179.72636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3428 1.2311 -1.0958 7 6 4.1493 2.3907 -2.8774 8 7 5.3913 2.1837 -3.2573 9 14 3.0133 3.4373 -3.9279 10 1 3.1171 4.8572 -3.5056 11 1 3.4064 3.3152 -5.3548 12 1 1.6135 2.9715 -3.7585 13 6 2.2430 2.0165 1.1673 14 8 2.6519 3.1583 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3090 2.2037 3.5859 17 6 3.5643 2.2158 4.0963 18 6 3.8978 3.0365 5.1241 19 6 2.9397 3.8823 5.6846 20 6 1.6461 3.8716 5.1688 21 6 0.6360 4.7256 5.7171 22 7 -0.1631 5.4050 6.1522 23 6 1.3467 2.9996 4.0895 24 8 0.2221 2.9717 3.6199 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 5.7175 2.5748 -4.0829 33 1 0.9444 1.0113 2.5302 34 1 2.6229 0.4186 2.5298 35 1 4.3144 1.5633 3.6744 36 1 4.9058 3.0324 5.5119 37 1 3.1972 4.5348 6.5056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119082402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:52 Heat of formation + Delta-G solvation = 5.506280 kcal Electronic energy + Delta-G solvation = -22617.182924 eV Core-core repulsion = 19168.036869 eV Total energy + Delta-G solvation = -3449.146055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69343 -39.20337 -37.16687 -36.66856 -35.62475 -34.49478 -32.80954 -30.56833 -30.40308 -29.24802 -27.20952 -25.11463 -23.46621 -23.10878 -22.16349 -19.71990 -18.66290 -17.77410 -17.23518 -17.15427 -16.94667 -16.18090 -15.45574 -15.08069 -14.92008 -14.66788 -14.02773 -13.65784 -13.60434 -13.55733 -13.22152 -13.03952 -12.70661 -12.63236 -12.41605 -12.30277 -12.15887 -12.05559 -11.86471 -11.51951 -11.07678 -10.85425 -10.59144 -10.49205 -10.24365 -10.16759 -9.65106 -9.26966 -8.67188 -8.17652 -7.92344 -6.18044 -4.17566 0.19909 1.66885 2.11020 2.76334 2.86212 3.00920 3.24311 3.30240 3.33535 3.55150 3.76650 3.93364 4.32628 4.36700 4.38991 4.61460 4.68126 4.76795 4.96690 5.09621 5.16101 5.16559 5.41414 5.45473 5.60950 5.67095 5.79754 5.86973 6.04618 6.14715 6.33015 6.57825 6.74248 6.84032 7.14200 7.50331 7.56430 7.79610 8.00335 8.34368 8.66650 8.83192 9.42216 10.94910 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.004389 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.581904 B = 6378.113069 C = 6629.309192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 N -0.585 5.585 4 C 0.217 3.783 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.496 3.504 14 O -0.526 6.526 15 C 0.065 3.935 16 N -0.470 5.470 17 C 0.192 3.808 18 C -0.248 4.248 19 C 0.062 3.938 20 C -0.177 4.177 21 C 0.285 3.715 22 N -0.428 5.428 23 C 0.543 3.457 24 O -0.532 6.532 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 -6.893 15.389 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.317 5.317 4 C 0.096 3.904 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.281 3.719 14 O -0.402 6.402 15 C -0.060 4.060 16 N -0.176 5.176 17 C 0.061 3.939 18 C -0.270 4.270 19 C 0.036 3.964 20 C -0.185 4.185 21 C -0.030 4.030 22 N -0.105 5.105 23 C 0.343 3.657 24 O -0.412 6.412 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.833 -5.241 15.507 16.812 hybrid contribution 0.026 0.215 -1.011 1.034 sum -3.807 -5.026 14.497 15.809 Atomic orbital electron populations 1.22262 0.96350 1.01882 1.02731 1.21536 0.93782 0.83418 1.03327 1.47911 1.63515 1.13521 1.06717 1.19710 0.97526 0.93452 0.79666 1.21262 0.95149 1.33230 1.07312 0.90702 1.24826 0.94985 0.95685 0.97302 1.69885 1.15087 1.44783 1.23615 0.86878 0.81490 0.81682 0.79839 1.19863 1.20959 1.19035 1.20214 0.79379 0.87315 0.85039 1.90739 1.45188 1.17624 1.86689 1.22145 1.06376 0.92579 0.84931 1.45057 1.10062 1.34317 1.28198 1.22368 0.85616 0.95036 0.90927 1.20544 1.01752 1.02557 1.02188 1.21880 0.89722 0.91138 0.93623 1.16716 0.92478 1.05378 1.03902 1.24687 0.92658 0.92609 0.93031 1.81163 1.08479 1.10774 1.10049 1.16559 0.84668 0.80837 0.83682 1.90963 1.20329 1.67775 1.62115 0.91684 0.92646 0.92006 0.89176 0.91440 0.94933 0.94528 0.92459 0.85302 0.85808 0.81068 0.82354 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.10 1.38 5.93 -4.04 -0.02 1.36 16 3 N -0.58 -10.92 2.46 -175.06 -0.43 -11.35 16 4 C 0.22 5.04 4.23 -5.19 -0.02 5.02 16 5 C -0.53 -14.40 9.94 -34.44 -0.34 -14.74 16 6 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.50 9.12 7.74 -10.98 -0.08 9.03 16 14 O -0.53 -12.16 16.01 5.56 0.09 -12.07 16 15 C 0.06 0.79 4.35 -5.19 -0.02 0.77 16 16 N -0.47 -5.80 2.07 -120.60 -0.25 -6.05 16 17 C 0.19 1.63 10.25 -16.83 -0.17 1.46 16 18 C -0.25 -1.69 9.99 -40.00 -0.40 -2.09 16 19 C 0.06 0.51 9.88 -38.71 -0.38 0.13 16 20 C -0.18 -2.27 5.79 -106.17 -0.62 -2.89 16 21 C 0.28 4.29 14.94 -22.50 -0.34 3.96 16 22 N -0.43 -7.20 18.53 41.81 0.77 -6.43 16 23 C 0.54 8.27 7.43 -14.90 -0.11 8.16 16 24 O -0.53 -10.15 16.09 5.01 0.08 -10.07 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.07 0.66 6.44 -51.93 -0.33 0.32 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.94 6.85 -51.92 -0.36 0.58 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.13 1.51 6.43 -51.93 -0.33 1.18 16 34 H 0.12 0.95 7.26 -51.93 -0.38 0.58 16 35 H 0.17 0.92 8.02 -52.49 -0.42 0.50 16 36 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -38.54 329.69 -5.16 -43.70 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.27 Total: -3.86 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -2.23 Total: 10.51 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.87 Total: -49.60 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.17 Total: -22.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.54 -5.16 -43.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.204 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds