Wall clock time and date at job start Tue Mar 31 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 5 5 C 1.50703 * 109.47219 * 269.99493 * 4 3 2 6 6 H 1.07996 * 119.99587 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99655 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99994 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.46889 * 90.00281 * 9 7 5 11 11 H 1.48510 * 109.46825 * 210.00042 * 9 7 5 12 12 H 1.48494 * 109.47200 * 329.99914 * 9 7 5 13 13 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 14 14 O 1.21274 * 119.99897 * 179.73022 * 13 3 2 15 15 C 1.50695 * 119.99635 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.46874 * 180.02562 * 15 13 3 17 17 C 1.35520 * 119.47354 * 269.72869 * 16 15 13 18 18 C 1.35689 * 121.22339 * 179.75692 * 17 16 15 19 19 C 1.39550 * 120.13732 * 0.51794 * 18 17 16 20 20 C 1.39264 * 118.96773 * 359.74205 * 19 18 17 21 21 C 1.43193 * 120.58615 * 180.02562 * 20 19 18 22 22 N 8.36235 * 78.31928 * 48.69915 * 2 1 3 23 23 C 1.34653 * 119.47749 * 89.99991 * 16 15 13 24 24 O 1.21904 * 120.10758 * 359.95465 * 23 16 15 25 25 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 27 27 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 28 28 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 29 29 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 4 3 2 31 31 H 1.09008 * 109.47058 * 150.00274 * 4 3 2 32 32 H 0.97008 * 119.99482 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47403 * 300.00056 * 15 13 3 34 34 H 1.09002 * 109.47422 * 60.00295 * 15 13 3 35 35 H 1.08002 * 119.39007 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.93162 * 180.27743 * 18 17 16 37 37 H 1.07991 * 120.51783 * 179.72636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8352 -1.7038 6 1 4.3428 1.2311 -1.0958 7 6 4.1493 2.3907 -2.8774 8 7 5.3913 2.1837 -3.2573 9 14 3.0133 3.4373 -3.9279 10 1 3.1171 4.8572 -3.5056 11 1 3.4064 3.3152 -5.3548 12 1 1.6135 2.9715 -3.7585 13 6 2.2430 2.0165 1.1673 14 8 2.6519 3.1583 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3090 2.2037 3.5859 17 6 3.5643 2.2158 4.0963 18 6 3.8978 3.0365 5.1241 19 6 2.9397 3.8823 5.6846 20 6 1.6461 3.8716 5.1688 21 6 0.6360 4.7256 5.7171 22 7 -0.1631 5.4050 6.1522 23 6 1.3467 2.9996 4.0895 24 8 0.2221 2.9717 3.6199 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 5.7175 2.5748 -4.0829 33 1 0.9444 1.0113 2.5302 34 1 2.6229 0.4186 2.5298 35 1 4.3144 1.5633 3.6744 36 1 4.9058 3.0324 5.5119 37 1 3.1972 4.5348 6.5056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119082402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:51 Heat of formation + Delta-G solvation = -22.212428 kcal Electronic energy + Delta-G solvation = -22618.384897 eV Core-core repulsion = 19168.036869 eV Total energy + Delta-G solvation = -3450.348029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.65139 -40.58899 -38.18922 -37.78444 -37.07350 -35.48410 -34.80905 -31.98784 -31.30289 -30.47438 -28.70841 -25.96566 -24.79745 -24.34627 -23.47042 -20.80520 -19.90496 -19.12143 -18.69388 -18.36505 -18.03712 -17.37699 -16.59263 -16.48273 -16.35915 -15.73596 -15.44819 -14.91375 -14.73755 -14.58776 -14.50650 -14.38121 -14.10620 -13.87043 -13.55571 -13.44784 -13.30778 -13.15676 -13.08334 -12.93095 -12.58364 -12.42915 -12.07518 -11.92370 -11.73770 -11.43846 -11.24216 -10.83131 -10.64489 -9.48825 -9.08525 -8.34472 -6.37596 -0.57691 0.83170 1.16087 1.30810 1.34841 1.41597 1.64252 1.71994 1.84281 2.26097 2.29258 2.77518 3.00276 3.00537 3.48085 3.57701 3.76837 3.91535 3.98098 4.10697 4.23244 4.34063 4.40549 4.61411 4.70240 4.78213 4.87679 4.98090 4.98554 4.99567 5.16249 5.38172 5.45778 5.51233 5.59549 5.87770 6.22213 6.48059 6.58386 6.63748 6.80313 7.18642 7.31356 8.81375 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.004389 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.581904 B = 6378.113069 C = 6629.309192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.528 4.528 6 H 0.045 0.955 7 C 0.020 3.980 8 N -0.938 5.938 9 Si 0.933 3.067 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.246 1.246 13 C 0.486 3.514 14 O -0.585 6.585 15 C 0.076 3.924 16 N -0.474 5.474 17 C 0.185 3.815 18 C -0.230 4.230 19 C 0.096 3.904 20 C -0.224 4.224 21 C 0.299 3.701 22 N -0.479 5.479 23 C 0.530 3.470 24 O -0.593 6.593 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.045 0.955 31 H 0.009 0.991 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.180 0.820 35 H 0.210 0.790 36 H 0.207 0.793 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -8.641 16.769 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.103 3.897 5 C -0.566 4.566 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.578 5.578 9 Si 0.757 3.243 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.169 1.169 13 C 0.273 3.727 14 O -0.466 6.466 15 C -0.048 4.048 16 N -0.180 5.180 17 C 0.055 3.945 18 C -0.251 4.251 19 C 0.071 3.929 20 C -0.232 4.232 21 C -0.014 4.014 22 N -0.157 5.157 23 C 0.332 3.668 24 O -0.478 6.478 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.197 0.803 35 H 0.227 0.773 36 H 0.224 0.776 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.712 -7.050 16.919 18.528 hybrid contribution -0.114 0.668 -1.380 1.537 sum -2.826 -6.382 15.539 17.035 Atomic orbital electron populations 1.22208 0.95012 1.03732 1.01565 1.21906 0.94835 0.80651 1.05217 1.48010 1.63509 1.15447 1.05434 1.19297 0.95386 0.92594 0.82456 1.21482 0.96568 1.31960 1.06625 0.93700 1.25638 0.96357 0.97031 0.98859 1.70005 1.16926 1.46415 1.24484 0.85934 0.80666 0.79267 0.78421 1.20759 1.19887 1.16932 1.21291 0.77727 0.86888 0.86762 1.90699 1.47772 1.20288 1.87792 1.22214 1.08155 0.93103 0.81376 1.45071 1.11018 1.33948 1.27952 1.23269 0.84563 0.95684 0.91002 1.21209 1.03167 1.00193 1.00546 1.22411 0.87590 0.90022 0.92894 1.16773 0.94041 1.06894 1.05477 1.25173 0.92337 0.91926 0.91951 1.81144 1.09638 1.12837 1.12095 1.16948 0.84507 0.81289 0.84079 1.90911 1.22690 1.69946 1.64242 0.88253 0.92921 0.94093 0.89980 0.86869 0.93738 0.97333 0.92289 0.84690 0.80270 0.77322 0.77605 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.33 5.93 86.38 0.51 2.84 16 3 N -0.59 -21.72 2.46 -826.16 -2.03 -23.75 16 4 C 0.23 10.55 4.23 85.63 0.36 10.91 16 5 C -0.53 -29.05 9.94 25.60 0.25 -28.79 16 6 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 7 C 0.02 1.13 5.47 84.65 0.46 1.60 16 8 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 9 Si 0.93 43.83 27.47 68.60 1.88 45.72 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 13 C 0.49 17.51 7.74 87.65 0.68 18.19 16 14 O -0.59 -27.48 16.01 -3.01 -0.05 -27.53 16 15 C 0.08 1.66 4.35 85.63 0.37 2.03 16 16 N -0.47 -10.67 2.07 -653.67 -1.35 -12.02 16 17 C 0.18 2.35 10.25 83.53 0.86 3.20 16 18 C -0.23 -1.93 9.99 22.00 0.22 -1.71 16 19 C 0.10 1.24 9.88 22.83 0.23 1.47 16 20 C -0.22 -5.59 5.79 -20.87 -0.12 -5.71 16 21 C 0.30 9.26 14.94 88.34 1.32 10.58 16 22 N -0.48 -16.82 18.53 19.00 0.35 -16.47 16 23 C 0.53 16.04 7.43 85.18 0.63 16.67 16 24 O -0.59 -23.56 16.09 -5.00 -0.08 -23.64 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.16 7.22 -2.39 -0.02 1.15 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.15 8.07 -2.39 -0.02 2.14 16 29 H 0.11 1.70 6.44 -2.39 -0.02 1.69 16 30 H 0.04 1.97 7.13 -2.39 -0.02 1.95 16 31 H 0.01 0.45 6.85 -2.38 -0.02 0.43 16 32 H 0.27 15.14 8.31 -92.70 -0.77 14.36 16 33 H 0.14 2.89 6.43 -2.38 -0.02 2.87 16 34 H 0.18 1.82 7.26 -2.39 -0.02 1.80 16 35 H 0.21 1.02 8.02 -2.91 -0.02 1.00 16 36 H 0.21 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.18 0.99 8.06 -2.92 -0.02 0.96 16 Total: -1.00 -93.18 329.69 6.58 -86.60 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: 1.04 Total: -1.12 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 6.51 Total: 28.46 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -2.73 Total: -108.49 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.13 Total: -51.17 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -93.18 6.58 -86.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.387 kcal (2) G-P(sol) polarization free energy of solvation -93.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds