Wall clock time and date at job start Tue Mar 31 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47258 * 2 1 4 4 C 1.36890 * 120.00481 * 73.78778 * 3 2 1 5 5 H 1.07995 * 120.00488 * 180.83581 * 4 3 2 6 6 C 1.39031 * 120.00031 * 0.83085 * 4 3 2 7 7 N 1.31382 * 119.99480 * 33.89339 * 6 4 3 8 8 Si 1.86792 * 120.00210 * 213.89238 * 6 4 3 9 9 H 1.48500 * 109.46931 * 90.00246 * 8 6 4 10 10 H 1.48500 * 109.47412 * 209.99834 * 8 6 4 11 11 H 1.48497 * 109.47198 * 330.00200 * 8 6 4 12 12 C 1.34779 * 119.99664 * 253.77996 * 3 2 1 13 13 O 1.21617 * 120.00101 * 183.67813 * 12 3 2 14 14 C 1.47517 * 120.00211 * 3.68610 * 12 3 2 15 15 C 1.39929 * 120.02266 * 220.49104 * 14 12 3 16 16 C 1.37624 * 120.14041 * 180.02562 * 15 14 12 17 17 C 1.38987 * 120.05073 * 359.97438 * 16 15 14 18 18 C 1.39883 * 120.10110 * 0.02562 * 17 16 15 19 19 C 1.38234 * 120.03194 * 0.05123 * 18 17 16 20 20 N 1.39384 * 106.74426 * 180.02562 * 18 17 16 21 21 H 0.96993 * 125.86920 * 180.02562 * 20 18 17 22 22 C 1.34642 * 108.26039 * 359.97438 * 20 18 17 23 23 O 1.21668 * 125.14123 * 180.02562 * 22 20 18 24 24 N 1.34602 * 109.71457 * 359.97438 * 22 20 18 25 25 C 1.46495 * 125.75567 * 179.73093 * 24 22 20 26 26 H 1.08995 * 109.47359 * 170.24267 * 1 2 3 27 27 H 1.08996 * 109.46910 * 290.24854 * 1 2 3 28 28 H 1.09003 * 109.46223 * 50.24105 * 1 2 3 29 29 H 1.08997 * 109.46960 * 239.99338 * 2 1 3 30 30 H 1.09002 * 109.46859 * 119.99460 * 2 1 3 31 31 H 0.96999 * 119.99895 * 179.97438 * 7 6 4 32 32 H 1.07995 * 119.92772 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.97173 * 180.02562 * 16 15 14 34 34 H 1.08005 * 120.13860 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47213 * 0.03053 * 25 24 22 36 36 H 1.08997 * 109.47039 * 120.02637 * 25 24 22 37 37 H 1.08996 * 109.47691 * 240.03045 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9345 2.1369 1.1383 5 1 2.2822 3.1594 1.1345 6 6 1.4018 1.5882 2.2993 7 7 1.5861 0.3157 2.5690 8 14 0.4239 2.6602 3.4757 9 1 -1.0119 2.6276 3.0979 10 1 0.5830 2.1482 4.8606 11 1 0.9231 4.0569 3.4039 12 6 2.5504 1.9078 -1.1208 13 8 3.0167 3.0309 -1.1031 14 6 2.5670 1.1220 -2.3691 15 6 3.6916 1.1532 -3.2012 16 6 3.7095 0.4214 -4.3666 17 6 2.6098 -0.3515 -4.7201 18 6 1.4823 -0.3872 -3.8929 19 6 1.4597 0.3476 -2.7222 20 7 0.5618 -1.2361 -4.5051 21 1 -0.3190 -1.4589 -4.1656 22 6 1.1052 -1.6928 -5.6492 23 8 0.5632 -2.4568 -6.4257 24 7 2.3381 -1.1756 -5.8046 25 6 3.2437 -1.4431 -6.9245 26 1 -0.3634 -1.0127 -0.1742 27 1 -0.3633 0.3557 0.9641 28 1 -0.3632 0.6573 -0.7901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.2148 -0.0672 3.3792 32 1 4.5470 1.7534 -2.9286 33 1 4.5791 0.4472 -5.0065 34 1 0.5902 0.3210 -2.0820 35 1 2.7656 -2.1307 -7.6221 36 1 3.4746 -0.5087 -7.4362 37 1 4.1647 -1.8887 -6.5487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124134896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:00 Heat of formation + Delta-G solvation = 17.560124 kcal Electronic energy + Delta-G solvation = -23063.475999 eV Core-core repulsion = 19614.852637 eV Total energy + Delta-G solvation = -3448.623361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.39805 -39.26710 -37.64223 -35.65463 -35.26475 -34.91037 -32.16542 -30.39030 -29.56660 -29.00013 -27.62890 -25.38218 -23.05422 -22.41827 -22.10758 -21.28549 -19.74232 -18.05538 -17.31247 -17.00040 -16.55158 -16.34412 -15.67310 -15.27329 -14.65318 -14.40559 -14.38246 -14.11068 -13.69054 -13.43529 -13.12382 -12.84673 -12.62733 -12.55803 -12.24289 -11.94837 -11.67383 -11.22467 -11.07864 -10.90733 -10.88883 -10.61662 -10.42038 -10.39620 -10.33076 -9.86755 -9.16617 -8.58484 -8.23311 -7.89216 -7.69751 -6.48631 -3.86300 1.22267 1.45469 2.28784 2.89438 3.06115 3.19888 3.24323 3.32651 3.55525 3.98174 4.17209 4.57131 4.70441 4.75080 4.97494 5.11955 5.12623 5.35452 5.42119 5.48965 5.49858 5.57559 5.87177 5.94226 6.10565 6.27030 6.28213 6.37476 6.44744 6.55867 6.74247 6.78016 6.88454 7.05166 7.22399 7.29868 7.56961 7.97394 8.19845 8.39346 9.04350 9.30746 9.88462 10.41782 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.004463 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.738102 B = 6271.804471 C = 6936.833294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.072 3.928 3 N -0.418 5.418 4 C -0.312 4.312 5 H 0.111 0.889 6 C 0.043 3.957 7 N -0.844 5.844 8 Si 0.911 3.089 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.467 3.533 13 O -0.590 6.590 14 C -0.077 4.077 15 C -0.066 4.066 16 C -0.112 4.112 17 C 0.085 3.915 18 C 0.079 3.921 19 C -0.094 4.094 20 N -0.641 5.641 21 H 0.433 0.567 22 C 0.681 3.319 23 O -0.569 6.569 24 N -0.540 5.540 25 C 0.099 3.901 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.271 0.729 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -5.001 -10.949 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.051 4.051 3 N -0.133 5.133 4 C -0.439 4.439 5 H 0.128 0.872 6 C -0.164 4.164 7 N -0.481 5.481 8 Si 0.737 3.263 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.257 3.743 13 O -0.477 6.477 14 C -0.082 4.082 15 C -0.087 4.087 16 C -0.133 4.133 17 C -0.016 4.016 18 C -0.022 4.022 19 C -0.116 4.116 20 N -0.286 5.286 21 H 0.275 0.725 22 C 0.382 3.618 23 O -0.446 6.446 24 N -0.263 5.263 25 C -0.043 4.043 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.708 -5.178 -11.426 12.564 hybrid contribution -1.004 0.136 0.757 1.265 sum -0.297 -5.042 -10.668 11.804 Atomic orbital electron populations 1.22102 0.97632 0.99459 1.02051 1.22355 0.93811 0.84488 1.04447 1.43793 1.49121 1.11417 1.08986 1.19712 1.39577 0.96836 0.87800 0.87167 1.25153 0.97676 0.95906 0.97616 1.69839 1.39431 1.13613 1.25260 0.86156 0.80525 0.81029 0.78595 1.20158 1.21035 1.19041 1.17618 0.85612 0.87691 0.83417 1.90629 1.51865 1.20029 1.85155 1.19987 0.93775 0.97506 0.96978 1.20913 0.98090 0.97421 0.92287 1.19897 0.96347 0.98697 0.98381 1.18102 0.96511 0.98229 0.88764 1.17859 0.89418 0.98498 0.96416 1.20850 1.00626 0.96224 0.93928 1.42904 1.18650 1.45227 1.21865 0.72501 1.15898 0.81326 0.82225 0.82326 1.91029 1.65998 1.39775 1.47804 1.44784 1.15878 1.43892 1.21708 1.21725 0.92714 1.02604 0.87216 0.93487 0.91595 0.93998 0.92765 0.85033 0.91758 0.84339 0.85253 0.83500 0.88995 0.90870 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.85 37.16 0.33 -2.52 16 2 C 0.07 1.50 4.89 -4.04 -0.02 1.48 16 3 N -0.42 -10.03 2.69 -116.00 -0.31 -10.34 16 4 C -0.31 -8.15 9.26 -15.00 -0.14 -8.29 16 5 H 0.11 3.09 7.35 -52.49 -0.39 2.70 16 6 C 0.04 1.03 3.88 -17.45 -0.07 0.97 16 7 N -0.84 -20.31 9.98 55.50 0.55 -19.76 16 8 Si 0.91 19.25 29.66 -169.99 -5.04 14.20 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.47 11.01 7.25 -12.48 -0.09 10.92 16 13 O -0.59 -15.94 16.51 5.26 0.09 -15.86 16 14 C -0.08 -1.44 5.08 -104.95 -0.53 -1.98 16 15 C -0.07 -1.06 9.62 -39.17 -0.38 -1.44 16 16 C -0.11 -1.47 9.99 -39.53 -0.39 -1.86 16 17 C 0.09 1.19 6.83 -83.77 -0.57 0.62 16 18 C 0.08 1.18 7.24 -83.81 -0.61 0.57 16 19 C -0.09 -1.55 7.42 -39.05 -0.29 -1.84 16 20 N -0.64 -8.66 6.16 -14.33 -0.09 -8.75 16 21 H 0.43 4.76 8.96 -40.82 -0.37 4.40 16 22 C 0.68 10.24 8.82 -87.19 -0.77 9.47 16 23 O -0.57 -9.93 17.52 5.22 0.09 -9.84 16 24 N -0.54 -7.09 3.17 -126.29 -0.40 -7.49 16 25 C 0.10 0.89 11.14 59.84 0.67 1.56 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.35 6.55 -51.93 -0.34 1.01 16 28 H 0.04 0.73 6.41 -51.93 -0.33 0.40 16 29 H 0.05 1.01 4.97 -51.93 -0.26 0.76 16 30 H 0.13 3.03 5.39 -51.93 -0.28 2.75 16 31 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 32 H 0.14 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.15 2.38 3.88 -52.48 -0.20 2.18 16 35 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -31.06 307.28 -7.16 -38.22 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.81 Total: 7.33 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -2.86 Total: 7.67 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.25 Total: -46.35 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.18 Total: -25.70 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.04 Total: 14.20 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.06 -7.16 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124134896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.776 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds