Wall clock time and date at job start Tue Mar 31 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47258 * 2 1 4 4 C 1.36890 * 120.00481 * 73.78778 * 3 2 1 5 5 H 1.07995 * 120.00488 * 180.83581 * 4 3 2 6 6 C 1.39031 * 120.00031 * 0.83085 * 4 3 2 7 7 N 1.31382 * 119.99480 * 33.89339 * 6 4 3 8 8 Si 1.86792 * 120.00210 * 213.89238 * 6 4 3 9 9 H 1.48500 * 109.46931 * 90.00246 * 8 6 4 10 10 H 1.48500 * 109.47412 * 209.99834 * 8 6 4 11 11 H 1.48497 * 109.47198 * 330.00200 * 8 6 4 12 12 C 1.34779 * 119.99664 * 253.77996 * 3 2 1 13 13 O 1.21617 * 120.00101 * 183.67813 * 12 3 2 14 14 C 1.47517 * 120.00211 * 3.68610 * 12 3 2 15 15 C 1.39929 * 120.02266 * 220.49104 * 14 12 3 16 16 C 1.37624 * 120.14041 * 180.02562 * 15 14 12 17 17 C 1.38987 * 120.05073 * 359.97438 * 16 15 14 18 18 C 1.39883 * 120.10110 * 0.02562 * 17 16 15 19 19 C 1.38234 * 120.03194 * 0.05123 * 18 17 16 20 20 N 1.39384 * 106.74426 * 180.02562 * 18 17 16 21 21 H 0.96993 * 125.86920 * 180.02562 * 20 18 17 22 22 C 1.34642 * 108.26039 * 359.97438 * 20 18 17 23 23 O 1.21668 * 125.14123 * 180.02562 * 22 20 18 24 24 N 1.34602 * 109.71457 * 359.97438 * 22 20 18 25 25 C 1.46495 * 125.75567 * 179.73093 * 24 22 20 26 26 H 1.08995 * 109.47359 * 170.24267 * 1 2 3 27 27 H 1.08996 * 109.46910 * 290.24854 * 1 2 3 28 28 H 1.09003 * 109.46223 * 50.24105 * 1 2 3 29 29 H 1.08997 * 109.46960 * 239.99338 * 2 1 3 30 30 H 1.09002 * 109.46859 * 119.99460 * 2 1 3 31 31 H 0.96999 * 119.99895 * 179.97438 * 7 6 4 32 32 H 1.07995 * 119.92772 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.97173 * 180.02562 * 16 15 14 34 34 H 1.08005 * 120.13860 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47213 * 0.03053 * 25 24 22 36 36 H 1.08997 * 109.47039 * 120.02637 * 25 24 22 37 37 H 1.08996 * 109.47691 * 240.03045 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9345 2.1369 1.1383 5 1 2.2822 3.1594 1.1345 6 6 1.4018 1.5882 2.2993 7 7 1.5861 0.3157 2.5690 8 14 0.4239 2.6602 3.4757 9 1 -1.0119 2.6276 3.0979 10 1 0.5830 2.1482 4.8606 11 1 0.9231 4.0569 3.4039 12 6 2.5504 1.9078 -1.1208 13 8 3.0167 3.0309 -1.1031 14 6 2.5670 1.1220 -2.3691 15 6 3.6916 1.1532 -3.2012 16 6 3.7095 0.4214 -4.3666 17 6 2.6098 -0.3515 -4.7201 18 6 1.4823 -0.3872 -3.8929 19 6 1.4597 0.3476 -2.7222 20 7 0.5618 -1.2361 -4.5051 21 1 -0.3190 -1.4589 -4.1656 22 6 1.1052 -1.6928 -5.6492 23 8 0.5632 -2.4568 -6.4257 24 7 2.3381 -1.1756 -5.8046 25 6 3.2437 -1.4431 -6.9245 26 1 -0.3634 -1.0127 -0.1742 27 1 -0.3633 0.3557 0.9641 28 1 -0.3632 0.6573 -0.7901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.2148 -0.0672 3.3792 32 1 4.5470 1.7534 -2.9286 33 1 4.5791 0.4472 -5.0065 34 1 0.5902 0.3210 -2.0820 35 1 2.7656 -2.1307 -7.6221 36 1 3.4746 -0.5087 -7.4362 37 1 4.1647 -1.8887 -6.5487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124134896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:59 Heat of formation + Delta-G solvation = -2.602997 kcal Electronic energy + Delta-G solvation = -23064.350337 eV Core-core repulsion = 19614.852637 eV Total energy + Delta-G solvation = -3449.497700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.54138 -40.86914 -39.01146 -37.18338 -36.79254 -36.02993 -33.94867 -31.81736 -31.08404 -30.22547 -28.59515 -27.11744 -24.49679 -23.68423 -23.60889 -22.34322 -21.28188 -19.22412 -18.93611 -18.58203 -17.89576 -17.61065 -16.93605 -16.65918 -16.26352 -15.88387 -15.81064 -15.55462 -14.91792 -14.64099 -14.49593 -14.21612 -13.95260 -13.81614 -13.62820 -13.32534 -13.24400 -12.88052 -12.75845 -12.30084 -12.13285 -12.04512 -11.98028 -11.85424 -11.76912 -11.26985 -11.00199 -10.44020 -9.74282 -9.42587 -8.91960 -8.32946 -5.82140 -0.05073 0.24739 1.27378 1.35526 1.45252 1.54816 1.74623 1.98884 2.19237 2.28333 2.65834 3.08900 3.12186 3.45276 3.79411 3.86856 4.12509 4.18956 4.37106 4.39235 4.50304 4.53668 4.70233 4.71362 4.79836 4.80874 4.94911 5.04183 5.15629 5.35468 5.41558 5.43892 5.53637 5.58032 5.72450 5.82562 6.09174 6.17336 6.53476 7.08416 7.16389 7.48268 8.05969 8.55232 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.004463 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.738102 B = 6271.804471 C = 6936.833294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 N -0.429 5.429 4 C -0.358 4.358 5 H 0.076 0.924 6 C 0.026 3.974 7 N -0.852 5.852 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.458 3.542 13 O -0.639 6.639 14 C -0.104 4.104 15 C -0.070 4.070 16 C -0.088 4.088 17 C 0.094 3.906 18 C 0.077 3.923 19 C -0.088 4.088 20 N -0.631 5.631 21 H 0.443 0.557 22 C 0.673 3.327 23 O -0.595 6.595 24 N -0.534 5.534 25 C 0.088 3.912 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.279 0.721 32 H 0.138 0.862 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -6.478 -12.589 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.047 4.047 3 N -0.143 5.143 4 C -0.485 4.485 5 H 0.094 0.906 6 C -0.180 4.180 7 N -0.488 5.488 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.250 3.750 13 O -0.529 6.529 14 C -0.109 4.109 15 C -0.091 4.091 16 C -0.108 4.108 17 C -0.008 4.008 18 C -0.025 4.025 19 C -0.110 4.110 20 N -0.277 5.277 21 H 0.287 0.713 22 C 0.375 3.625 23 O -0.474 6.474 24 N -0.255 5.255 25 C -0.052 4.052 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.191 0.809 34 H 0.164 0.836 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.635 -6.706 -13.070 14.703 hybrid contribution -0.927 0.524 1.137 1.558 sum -0.292 -6.182 -11.932 13.442 Atomic orbital electron populations 1.22012 0.95864 1.01540 1.00971 1.22364 0.95236 0.82786 1.04304 1.43945 1.49415 1.12391 1.08585 1.19481 1.43089 0.96244 0.89664 0.90643 1.25675 0.97105 0.97032 0.98190 1.69898 1.38883 1.14254 1.25743 0.85365 0.79368 0.78978 0.77343 1.19260 1.19762 1.20206 1.18404 0.84300 0.87523 0.84792 1.90569 1.53720 1.22312 1.86307 1.19643 0.96173 0.99222 0.95870 1.20981 0.97260 0.97975 0.92915 1.20136 0.97183 0.96334 0.97193 1.18287 0.96248 0.97630 0.88632 1.17758 0.90248 0.98451 0.96090 1.20614 0.99814 0.96002 0.94576 1.42883 1.18974 1.44451 1.21351 0.71316 1.16050 0.81901 0.82264 0.82318 1.91015 1.66743 1.41023 1.48659 1.45024 1.15658 1.42760 1.22069 1.22118 0.92723 1.04142 0.86218 0.90145 0.93932 0.93358 0.90731 0.87192 0.91041 0.84459 0.80945 0.83638 0.89139 0.88521 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 8.85 71.98 0.64 -4.65 16 2 C 0.08 3.15 4.89 86.38 0.42 3.57 16 3 N -0.43 -21.33 2.69 -639.16 -1.72 -23.05 16 4 C -0.36 -19.59 9.26 84.09 0.78 -18.81 16 5 H 0.08 4.56 7.35 -2.91 -0.02 4.53 16 6 C 0.03 1.29 3.88 84.95 0.33 1.62 16 7 N -0.85 -41.26 9.98 21.68 0.22 -41.04 16 8 Si 0.97 39.99 29.66 68.60 2.03 42.03 16 9 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 10 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 C 0.46 22.48 7.25 86.69 0.63 23.11 16 13 O -0.64 -36.44 16.51 -4.08 -0.07 -36.51 16 14 C -0.10 -3.87 5.08 -20.08 -0.10 -3.98 16 15 C -0.07 -2.15 9.62 22.53 0.22 -1.93 16 16 C -0.09 -1.97 9.99 22.30 0.22 -1.75 16 17 C 0.09 2.31 6.83 38.60 0.26 2.57 16 18 C 0.08 2.08 7.24 38.34 0.28 2.36 16 19 C -0.09 -2.79 7.42 22.61 0.17 -2.62 16 20 N -0.63 -15.49 6.16 -317.54 -1.96 -17.44 16 21 H 0.44 8.76 8.96 -92.71 -0.83 7.93 16 22 C 0.67 18.46 8.82 179.15 1.58 20.04 16 23 O -0.59 -19.55 17.52 -4.25 -0.07 -19.62 16 24 N -0.53 -12.05 3.17 -671.79 -2.13 -14.18 16 25 C 0.09 1.21 11.14 127.77 1.42 2.63 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.72 6.55 -2.39 -0.02 1.71 16 28 H 0.05 1.66 6.41 -2.39 -0.02 1.65 16 29 H 0.07 2.75 4.97 -2.39 -0.01 2.74 16 30 H 0.11 5.12 5.39 -2.39 -0.01 5.10 16 31 H 0.28 12.51 8.31 -92.71 -0.77 11.74 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.15 4.57 3.88 -2.91 -0.01 4.56 16 35 H 0.09 1.33 7.66 -2.39 -0.02 1.31 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.34 307.28 3.46 -66.88 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.31 Total: 20.77 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 6.85 Total: 22.16 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -5.59 Total: -95.71 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.14 Total: -56.13 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.03 kcal Total: -70.34 3.46 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124134896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.278 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds