Wall clock time and date at job start Tue Mar 31 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57841 * 2 1 4 4 O 1.42100 * 108.57660 * 228.97736 * 2 1 3 5 5 C 1.81401 * 101.92076 * 114.48851 * 2 1 3 6 6 C 1.53003 * 109.46790 * 180.02562 * 5 2 1 7 7 C 1.50698 * 109.46695 * 179.97438 * 6 5 2 8 8 O 1.21296 * 120.00535 * 353.53821 * 7 6 5 9 9 N 1.34783 * 119.99658 * 173.53466 * 7 6 5 10 10 C 1.37092 * 119.99974 * 356.29338 * 9 7 6 11 11 H 1.07993 * 119.99927 * 232.08763 * 10 9 7 12 12 C 1.38955 * 119.99932 * 52.09031 * 10 9 7 13 13 N 1.31407 * 120.00086 * 26.89776 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 206.89822 * 12 10 9 15 15 H 1.48497 * 109.47125 * 59.99692 * 14 12 10 16 16 H 1.48497 * 109.46935 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47087 * 299.99736 * 14 12 10 18 18 C 1.46503 * 119.99837 * 176.01540 * 9 7 6 19 19 C 1.54259 * 110.03575 * 237.91020 * 18 9 7 20 20 C 1.54957 * 104.16212 * 217.13936 * 19 18 9 21 21 C 1.54886 * 102.77959 * 37.88552 * 20 19 18 22 22 C 1.53877 * 110.02882 * 120.69198 * 18 9 7 23 23 H 1.09004 * 109.47317 * 305.51359 * 1 2 3 24 24 H 1.09000 * 109.47456 * 65.50997 * 1 2 3 25 25 H 1.08998 * 109.47240 * 185.51294 * 1 2 3 26 26 H 1.08992 * 109.47334 * 60.00197 * 5 2 1 27 27 H 1.09002 * 109.46928 * 299.99562 * 5 2 1 28 28 H 1.09000 * 109.47047 * 60.00122 * 6 5 2 29 29 H 1.08995 * 109.47021 * 299.99734 * 6 5 2 30 30 H 0.97000 * 119.99826 * 184.89277 * 13 12 10 31 31 H 1.09000 * 110.01435 * 359.30423 * 18 9 7 32 32 H 1.09003 * 110.48532 * 335.78921 * 19 18 9 33 33 H 1.08999 * 110.48971 * 98.42191 * 19 18 9 34 34 H 1.08996 * 110.72140 * 279.57080 * 20 19 18 35 35 H 1.09004 * 110.92214 * 156.29253 * 20 19 18 36 36 H 1.08998 * 110.49052 * 203.40538 * 21 20 19 37 37 H 1.09002 * 110.60168 * 80.81430 * 21 20 19 38 38 H 1.08999 * 110.02946 * 238.57062 * 22 18 9 39 39 H 1.09000 * 110.03096 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7984 7 6 4.0168 -1.4290 3.1405 8 8 3.1208 -1.6569 3.9257 9 7 5.2908 -1.7221 3.4683 10 6 6.2943 -1.5357 2.5531 11 1 6.9785 -2.3410 2.3304 12 6 6.4312 -0.3105 1.9120 13 7 6.0084 0.7878 2.4966 14 14 7.2161 -0.2247 0.2190 15 1 6.4252 -1.0427 -0.7353 16 1 7.2431 1.1862 -0.2431 17 1 8.6035 -0.7497 0.2895 18 6 5.6041 -2.2341 4.8047 19 6 6.6231 -1.3079 5.5000 20 6 7.5385 -2.2769 6.2902 21 6 7.6690 -3.4849 5.3296 22 6 6.2684 -3.6178 4.6966 23 1 -0.3634 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7369 1.6665 27 1 1.7611 -0.1171 2.4042 28 1 4.1328 0.1830 1.7473 29 1 4.1335 -1.4368 1.0094 30 1 6.0387 1.6328 2.0212 31 1 4.6941 -2.3023 5.4009 32 1 7.2018 -0.7542 4.7607 33 1 6.1150 -0.6230 6.1788 34 1 7.0666 -2.5766 7.2258 35 1 8.5129 -1.8257 6.4779 36 1 7.9241 -4.3877 5.8844 37 1 8.4170 -3.2857 4.5622 38 1 5.6813 -4.3574 5.2411 39 1 6.3573 -3.9086 3.6499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125217410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:14 Heat of formation + Delta-G solvation = -133.955082 kcal Electronic energy + Delta-G solvation = -22344.858214 eV Core-core repulsion = 18992.815861 eV Total energy + Delta-G solvation = -3352.042354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86097 -38.45523 -37.98756 -37.03787 -36.05472 -33.93847 -33.14389 -30.41283 -29.46684 -28.82280 -26.86999 -25.36460 -21.49294 -21.33039 -21.06848 -19.81922 -18.71118 -17.56385 -17.48491 -17.22723 -16.93217 -16.71345 -16.30558 -15.98730 -15.77444 -15.13760 -14.47458 -14.33893 -14.08820 -13.97139 -13.92350 -13.52322 -13.44769 -13.13519 -13.06981 -13.02474 -12.65787 -12.45392 -12.33822 -12.27900 -12.10787 -11.99224 -11.88241 -11.82325 -11.50156 -11.37812 -11.33211 -10.69240 -10.28982 -9.28547 -8.37569 -6.20769 -0.92443 1.36514 1.47731 1.50821 1.87415 2.06416 2.27754 2.65601 2.87951 3.07629 3.11379 3.77376 3.86318 3.89935 3.97838 4.11589 4.17135 4.27161 4.37747 4.60616 4.68032 4.75534 4.79275 4.83467 4.91151 4.92691 4.96268 5.07589 5.10504 5.16017 5.24547 5.39971 5.50198 5.53080 5.64734 6.08460 6.66036 6.94479 7.60139 8.04354 8.63140 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.006055 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.480085 B = 4623.423888 C = 5481.053103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.415 3.585 3 O -0.986 6.986 4 O -0.982 6.982 5 C -0.587 4.587 6 C -0.128 4.128 7 C 0.499 3.501 8 O -0.633 6.633 9 N -0.449 5.449 10 C -0.347 4.347 11 H 0.090 0.910 12 C 0.028 3.972 13 N -0.870 5.870 14 Si 0.926 3.074 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.253 1.253 18 C 0.119 3.881 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.109 4.109 22 C -0.121 4.121 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.158 0.842 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.272 0.728 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 -4.049 -0.578 7.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.602 3.398 3 O -0.983 6.983 4 O -0.980 6.980 5 C -0.716 4.716 6 C -0.169 4.169 7 C 0.289 3.711 8 O -0.522 6.522 9 N -0.167 5.167 10 C -0.474 4.474 11 H 0.107 0.893 12 C -0.178 4.178 13 N -0.506 5.506 14 Si 0.749 3.251 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.177 1.177 18 C 0.015 3.985 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.160 4.160 23 H 0.172 0.828 24 H 0.167 0.833 25 H 0.176 0.824 26 H 0.166 0.834 27 H 0.157 0.843 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.404 -3.664 -0.833 6.582 hybrid contribution -0.058 0.364 -0.195 0.417 sum -5.462 -3.299 -1.028 6.463 Atomic orbital electron populations 1.29982 1.19443 1.14327 1.13823 1.07685 0.81137 0.74293 0.76696 1.93530 1.81584 1.36381 1.86850 1.93521 1.81579 1.67469 1.55402 1.30130 1.03469 1.15270 1.22754 1.21407 0.93171 1.04611 0.97685 1.20416 0.82602 0.79442 0.88671 1.90433 1.46900 1.60447 1.54437 1.43642 1.04933 1.57238 1.10879 1.19290 1.12616 0.97062 1.18460 0.89292 1.26026 0.96357 0.94165 1.01266 1.70166 1.45376 0.98940 1.36102 0.85997 0.80530 0.77868 0.80681 1.18932 1.20848 1.17651 1.21857 0.97172 0.94314 0.85122 1.22501 0.97340 0.97607 0.98234 1.22416 0.99185 0.95432 0.97857 1.22232 0.95645 0.98531 0.98222 1.22347 0.97145 0.95440 1.01049 0.82802 0.83337 0.82416 0.83424 0.84256 0.87966 0.89303 0.91755 0.92246 0.92043 0.94140 0.90538 0.90763 0.89574 0.92265 0.91239 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -9.03 10.62 113.37 1.20 -7.82 16 2 S 2.41 70.33 5.36 -56.49 -0.30 70.02 16 3 O -0.99 -37.24 18.10 -127.37 -2.30 -39.55 16 4 O -0.98 -35.40 18.10 -127.37 -2.30 -37.70 16 5 C -0.59 -19.68 5.12 71.98 0.37 -19.32 16 6 C -0.13 -5.85 3.86 29.85 0.12 -5.74 16 7 C 0.50 25.39 7.26 87.66 0.64 26.02 16 8 O -0.63 -33.54 15.34 -3.08 -0.05 -33.58 16 9 N -0.45 -22.25 2.37 -609.38 -1.44 -23.69 16 10 C -0.35 -17.22 6.79 84.04 0.57 -16.65 16 11 H 0.09 4.28 7.29 -2.91 -0.02 4.26 16 12 C 0.03 1.39 3.35 84.93 0.28 1.68 16 13 N -0.87 -46.35 11.58 21.66 0.25 -46.09 16 14 Si 0.93 40.23 29.63 68.60 2.03 42.26 16 15 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 18 C 0.12 5.21 3.29 45.71 0.15 5.36 16 19 C -0.12 -4.85 6.42 31.69 0.20 -4.64 16 20 C -0.11 -3.38 6.91 31.91 0.22 -3.16 16 21 C -0.11 -3.23 6.83 31.67 0.22 -3.01 16 22 C -0.12 -4.35 6.26 31.32 0.20 -4.15 16 23 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.15 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.14 4.39 8.03 -2.39 -0.02 4.37 16 28 H 0.10 5.09 5.46 -2.39 -0.01 5.08 16 29 H 0.09 4.03 7.75 -2.39 -0.02 4.01 16 30 H 0.27 14.09 8.32 -92.71 -0.77 13.32 16 31 H 0.06 2.78 6.95 -2.39 -0.02 2.76 16 32 H 0.06 2.91 7.02 -2.39 -0.02 2.89 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.22 6.95 -2.39 -0.02 2.20 16 Total: -1.00 -73.38 327.68 1.08 -72.30 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 1.03 Total: 27.46 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.17 Total: -31.43 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -1.19 Total: -69.78 kcal Atomic # 8 Polarization: -106.18 SS G_CDS: -4.66 Total: -110.83 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 70.33 SS G_CDS: -0.30 Total: 70.02 kcal Total: -73.38 1.08 -72.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125217410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.653 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds