Wall clock time and date at job start Tue Mar 31 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00038 * 2 1 4 4 C 1.50700 * 109.46517 * 269.99805 * 3 2 1 5 5 H 1.07997 * 120.00701 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99484 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99451 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47085 * 89.99893 * 8 6 4 10 10 H 1.48494 * 109.47290 * 210.00360 * 8 6 4 11 11 H 1.48503 * 109.47178 * 330.00409 * 8 6 4 12 12 C 1.34783 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.21578 * 120.00409 * 184.86313 * 12 2 1 14 14 C 1.47629 * 119.99620 * 4.86371 * 12 2 1 15 15 C 1.39856 * 120.01815 * 140.48045 * 14 12 2 16 16 C 1.37641 * 120.14744 * 180.02562 * 15 14 12 17 17 C 1.38963 * 120.04911 * 359.97438 * 16 15 14 18 18 C 1.39873 * 120.08822 * 0.02562 * 17 16 15 19 19 C 1.38254 * 120.02289 * 0.05615 * 18 17 16 20 20 N 1.39372 * 106.74736 * 180.02562 * 18 17 16 21 21 H 0.97003 * 125.87038 * 180.02562 * 20 18 17 22 22 C 1.34640 * 108.26280 * 0.02562 * 20 18 17 23 23 O 1.21678 * 125.14368 * 180.02562 * 22 20 18 24 24 N 1.34603 * 109.71091 * 359.97438 * 22 20 18 25 25 C 1.46494 * 125.75620 * 179.73360 * 24 22 20 26 26 H 1.09006 * 109.46829 * 265.84956 * 1 2 3 27 27 H 1.08994 * 109.47670 * 25.85101 * 1 2 3 28 28 H 1.09007 * 109.47422 * 145.85474 * 1 2 3 29 29 H 1.08998 * 109.46832 * 29.99488 * 3 2 1 30 30 H 1.08999 * 109.46939 * 150.00181 * 3 2 1 31 31 H 0.97008 * 119.99931 * 180.02562 * 7 6 4 32 32 H 1.08001 * 119.92471 * 0.02562 * 15 14 12 33 33 H 1.08003 * 119.97751 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.13538 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47430 * 0.03228 * 25 24 22 36 36 H 1.09001 * 109.46909 * 120.03239 * 25 24 22 37 37 H 1.09005 * 109.47378 * 240.02945 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.3456 3.2571 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1070 3.5068 0.1236 10 1 3.7497 5.3553 -0.6650 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3514 -1.1691 0.0898 14 6 1.4047 -2.4435 -0.1073 15 6 1.9209 -3.4839 -0.8864 16 6 1.2383 -4.6747 -0.9893 17 6 0.0337 -4.8465 -0.3181 18 6 -0.4879 -3.8099 0.4628 19 6 0.1940 -2.6118 0.5670 20 7 -1.6861 -4.2763 1.0007 21 1 -2.2777 -3.7788 1.5868 22 6 -1.8813 -5.5359 0.5672 23 8 -2.8362 -6.2344 0.8514 24 7 -0.8609 -5.9052 -0.2292 25 6 -0.7152 -7.2065 -0.8859 26 1 -0.3633 -0.0744 1.0250 27 1 -0.3634 0.9247 -0.4481 28 1 -0.3634 -0.8505 -0.5768 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.8231 4.0827 -3.0902 32 1 2.8572 -3.3527 -1.4086 33 1 1.6397 -5.4765 -1.5914 34 1 -0.2073 -1.8101 1.1691 35 1 -1.5657 -7.8391 -0.6318 36 1 -0.6768 -7.0660 -1.9662 37 1 0.2055 -7.6828 -0.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126729818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:22 Heat of formation + Delta-G solvation = 9.849712 kcal Electronic energy + Delta-G solvation = -22411.192396 eV Core-core repulsion = 18962.234686 eV Total energy + Delta-G solvation = -3448.957710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.70026 -39.67100 -37.98201 -35.90355 -35.34828 -35.02925 -32.64653 -30.95906 -29.42156 -28.44512 -27.76038 -26.14951 -23.82494 -22.72908 -22.02988 -21.54939 -19.42427 -18.34347 -17.59016 -16.98772 -16.81229 -16.62902 -15.90322 -15.59828 -15.13697 -14.91406 -14.52854 -14.09219 -13.94862 -13.88579 -13.47171 -13.07151 -12.82891 -12.57246 -12.52966 -12.35424 -12.10162 -11.57102 -11.24869 -11.18960 -10.99108 -10.87320 -10.62476 -10.52167 -10.18304 -9.60285 -9.25227 -8.63654 -8.61728 -8.06474 -7.78263 -6.12427 -4.12015 0.83211 1.11148 2.02091 2.64540 2.99934 3.11704 3.27039 3.32900 3.34960 3.58010 3.91774 4.23253 4.36410 4.49290 4.72875 4.92088 4.95721 5.04281 5.16186 5.20560 5.21402 5.26490 5.50992 5.54571 5.66905 5.81994 5.98609 6.10045 6.17198 6.29827 6.43271 6.58969 6.65034 6.89056 6.98851 7.22986 7.55547 7.93982 8.11161 8.41546 8.80289 8.91539 9.47236 11.00742 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.003567 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.923285 B = 7847.412351 C = 8172.995431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.589 5.589 3 C 0.214 3.786 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.553 3.447 13 O -0.532 6.532 14 C -0.104 4.104 15 C -0.052 4.052 16 C -0.111 4.111 17 C 0.102 3.898 18 C 0.077 3.923 19 C -0.080 4.080 20 N -0.641 5.641 21 H 0.435 0.565 22 C 0.682 3.318 23 O -0.561 6.561 24 N -0.540 5.540 25 C 0.097 3.903 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 -16.456 5.943 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.319 5.319 3 C 0.094 3.906 4 C -0.571 4.571 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.340 3.660 13 O -0.410 6.410 14 C -0.109 4.109 15 C -0.073 4.073 16 C -0.132 4.132 17 C 0.000 4.000 18 C -0.025 4.025 19 C -0.101 4.101 20 N -0.287 5.287 21 H 0.277 0.723 22 C 0.383 3.617 23 O -0.438 6.438 24 N -0.262 5.262 25 C -0.045 4.045 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.983 -16.942 5.991 20.091 hybrid contribution -0.022 0.916 0.764 1.193 sum -9.005 -16.026 6.756 19.585 Atomic orbital electron populations 1.22010 0.81068 1.03741 0.99944 1.47756 1.06313 1.06958 1.70903 1.19739 0.92641 0.79660 0.98554 1.21326 1.37241 1.07348 0.91181 0.90629 1.24856 0.95177 0.97312 0.95601 1.69895 1.41268 1.23581 1.18670 0.86849 0.80188 0.79774 0.82873 1.19819 1.21059 1.19034 1.17979 0.87080 0.83112 0.77861 1.90775 1.13358 1.86943 1.49909 1.19859 0.94795 0.95964 1.00305 1.20972 0.99400 0.90419 0.96479 1.19976 0.92577 0.98908 1.01738 1.18189 0.93991 0.86974 1.00811 1.17796 0.89046 0.95461 1.00154 1.20566 0.93809 0.94763 1.00988 1.42908 1.22242 1.14587 1.48916 0.72295 1.15913 0.83208 0.81947 0.80593 1.91058 1.31759 1.56565 1.64413 1.44873 1.20567 1.14296 1.46476 1.21792 1.04045 0.81114 0.97527 0.93462 0.90316 0.91432 0.94978 0.94186 0.92496 0.83725 0.84652 0.83732 0.88778 0.90579 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 8.88 59.84 0.53 1.62 16 2 N -0.59 -11.55 2.86 -184.16 -0.53 -12.08 16 3 C 0.21 5.05 4.25 -5.19 -0.02 5.02 16 4 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 5 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 8 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 12 C 0.55 10.84 7.34 -12.42 -0.09 10.75 16 13 O -0.53 -12.58 16.46 5.30 0.09 -12.49 16 14 C -0.10 -1.54 5.23 -104.95 -0.55 -2.09 16 15 C -0.05 -0.68 9.61 -39.19 -0.38 -1.06 16 16 C -0.11 -1.15 9.99 -39.53 -0.39 -1.55 16 17 C 0.10 1.13 6.83 -83.78 -0.57 0.56 16 18 C 0.08 0.86 7.24 -83.81 -0.61 0.26 16 19 C -0.08 -0.94 7.57 -39.07 -0.30 -1.24 16 20 N -0.64 -6.60 6.16 -14.32 -0.09 -6.69 16 21 H 0.44 3.30 8.96 -40.82 -0.37 2.94 16 22 C 0.68 8.49 8.82 -87.20 -0.77 7.72 16 23 O -0.56 -8.54 17.52 5.21 0.09 -8.45 16 24 N -0.54 -5.76 3.17 -126.29 -0.40 -6.16 16 25 C 0.10 0.68 11.14 59.84 0.67 1.34 16 26 H 0.05 0.53 6.90 -51.93 -0.36 0.17 16 27 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 28 H 0.07 0.86 5.80 -51.93 -0.30 0.56 16 29 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 30 H 0.04 1.01 6.79 -51.93 -0.35 0.65 16 31 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.14 1.90 8.05 -52.49 -0.42 1.47 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.15 1.46 5.32 -52.49 -0.28 1.18 16 35 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -36.06 316.02 -7.01 -43.07 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.12 Total: -0.16 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -2.92 Total: 8.14 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.24 Total: -51.21 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.18 Total: -20.94 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.06 -7.01 -43.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126729818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.918 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds