Wall clock time and date at job start Tue Mar 31 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00038 * 2 1 4 4 C 1.50700 * 109.46517 * 269.99805 * 3 2 1 5 5 H 1.07997 * 120.00701 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99484 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99451 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47085 * 89.99893 * 8 6 4 10 10 H 1.48494 * 109.47290 * 210.00360 * 8 6 4 11 11 H 1.48503 * 109.47178 * 330.00409 * 8 6 4 12 12 C 1.34783 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.21578 * 120.00409 * 184.86313 * 12 2 1 14 14 C 1.47629 * 119.99620 * 4.86371 * 12 2 1 15 15 C 1.39856 * 120.01815 * 140.48045 * 14 12 2 16 16 C 1.37641 * 120.14744 * 180.02562 * 15 14 12 17 17 C 1.38963 * 120.04911 * 359.97438 * 16 15 14 18 18 C 1.39873 * 120.08822 * 0.02562 * 17 16 15 19 19 C 1.38254 * 120.02289 * 0.05615 * 18 17 16 20 20 N 1.39372 * 106.74736 * 180.02562 * 18 17 16 21 21 H 0.97003 * 125.87038 * 180.02562 * 20 18 17 22 22 C 1.34640 * 108.26280 * 0.02562 * 20 18 17 23 23 O 1.21678 * 125.14368 * 180.02562 * 22 20 18 24 24 N 1.34603 * 109.71091 * 359.97438 * 22 20 18 25 25 C 1.46494 * 125.75620 * 179.73360 * 24 22 20 26 26 H 1.09006 * 109.46829 * 265.84956 * 1 2 3 27 27 H 1.08994 * 109.47670 * 25.85101 * 1 2 3 28 28 H 1.09007 * 109.47422 * 145.85474 * 1 2 3 29 29 H 1.08998 * 109.46832 * 29.99488 * 3 2 1 30 30 H 1.08999 * 109.46939 * 150.00181 * 3 2 1 31 31 H 0.97008 * 119.99931 * 180.02562 * 7 6 4 32 32 H 1.08001 * 119.92471 * 0.02562 * 15 14 12 33 33 H 1.08003 * 119.97751 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.13538 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47430 * 0.03228 * 25 24 22 36 36 H 1.09001 * 109.46909 * 120.03239 * 25 24 22 37 37 H 1.09005 * 109.47378 * 240.02945 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.3456 3.2571 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1070 3.5068 0.1236 10 1 3.7497 5.3553 -0.6650 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3514 -1.1691 0.0898 14 6 1.4047 -2.4435 -0.1073 15 6 1.9209 -3.4839 -0.8864 16 6 1.2383 -4.6747 -0.9893 17 6 0.0337 -4.8465 -0.3181 18 6 -0.4879 -3.8099 0.4628 19 6 0.1940 -2.6118 0.5670 20 7 -1.6861 -4.2763 1.0007 21 1 -2.2777 -3.7788 1.5868 22 6 -1.8813 -5.5359 0.5672 23 8 -2.8362 -6.2344 0.8514 24 7 -0.8609 -5.9052 -0.2292 25 6 -0.7152 -7.2065 -0.8859 26 1 -0.3633 -0.0744 1.0250 27 1 -0.3634 0.9247 -0.4481 28 1 -0.3634 -0.8505 -0.5768 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.8231 4.0827 -3.0902 32 1 2.8572 -3.3527 -1.4086 33 1 1.6397 -5.4765 -1.5914 34 1 -0.2073 -1.8101 1.1691 35 1 -1.5657 -7.8391 -0.6318 36 1 -0.6768 -7.0660 -1.9662 37 1 0.2055 -7.6828 -0.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126729818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:21 Heat of formation + Delta-G solvation = -16.347955 kcal Electronic energy + Delta-G solvation = -22412.328412 eV Core-core repulsion = 18962.234686 eV Total energy + Delta-G solvation = -3450.093726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.59965 -41.02820 -39.11259 -36.95641 -36.74272 -36.06906 -34.69432 -32.12814 -30.47794 -29.98023 -28.59357 -27.49073 -25.30361 -23.66188 -23.51102 -22.38792 -20.78224 -19.26882 -19.10081 -18.72924 -17.89790 -17.65819 -17.15580 -16.71147 -16.40884 -16.30386 -15.79635 -15.44568 -15.09274 -14.80115 -14.52952 -14.43736 -14.07169 -13.84481 -13.77690 -13.63765 -13.30108 -13.13270 -12.83184 -12.42555 -12.24989 -12.09854 -12.00388 -11.87945 -11.72462 -11.47760 -10.82986 -10.79005 -9.51779 -9.44805 -8.97728 -8.31490 -6.37013 -0.17641 0.17767 1.22739 1.36515 1.40566 1.48605 1.70153 1.79226 2.09803 2.30541 2.33964 2.71449 3.03161 3.36152 3.60659 3.75932 4.00943 4.09110 4.27522 4.37008 4.45832 4.50424 4.62860 4.63491 4.77787 4.78812 4.93129 4.95480 4.99036 5.06908 5.28726 5.36882 5.47032 5.49572 5.60322 5.79261 6.11263 6.25220 6.62802 6.65274 7.05428 7.20986 7.35094 8.85247 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.003567 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.923285 B = 7847.412351 C = 8172.995431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.235 1.235 12 C 0.547 3.453 13 O -0.587 6.587 14 C -0.126 4.126 15 C -0.062 4.062 16 C -0.092 4.092 17 C 0.104 3.896 18 C 0.077 3.923 19 C -0.063 4.063 20 N -0.627 5.627 21 H 0.447 0.553 22 C 0.673 3.327 23 O -0.593 6.593 24 N -0.536 5.536 25 C 0.086 3.914 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 -17.407 7.528 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.099 3.901 4 C -0.577 4.577 5 H 0.049 0.951 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.158 1.158 12 C 0.336 3.664 13 O -0.468 6.468 14 C -0.131 4.131 15 C -0.083 4.083 16 C -0.113 4.113 17 C 0.001 3.999 18 C -0.026 4.026 19 C -0.085 4.085 20 N -0.273 5.273 21 H 0.291 0.709 22 C 0.374 3.626 23 O -0.472 6.472 24 N -0.257 5.257 25 C -0.054 4.054 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.309 -17.912 7.584 22.015 hybrid contribution 0.315 1.074 0.175 1.133 sum -9.994 -16.838 7.759 21.062 Atomic orbital electron populations 1.22333 0.77837 1.04165 1.02883 1.47837 1.08404 1.05783 1.70673 1.19423 0.93036 0.82115 0.95478 1.21571 1.36879 1.06852 0.92409 0.95127 1.25844 0.95281 0.98929 0.98577 1.70050 1.42628 1.24504 1.21311 0.85724 0.79678 0.77662 0.79957 1.20154 1.20248 1.15838 1.18709 0.86769 0.84522 0.76361 1.90727 1.15851 1.87914 1.52350 1.19476 0.96207 0.94176 1.03203 1.20981 0.99526 0.91131 0.96682 1.20114 0.91716 0.98478 1.01021 1.18362 0.94047 0.87109 1.00354 1.17751 0.89255 0.95327 1.00230 1.20495 0.92417 0.95471 1.00096 1.42843 1.21954 1.14048 1.48504 0.70880 1.16080 0.83280 0.82247 0.80949 1.91039 1.33064 1.57460 1.65645 1.45092 1.19666 1.15138 1.45796 1.22125 1.05013 0.79623 0.98591 0.89229 0.91076 0.89779 0.92666 0.95832 0.92275 0.84724 0.81323 0.81837 0.89109 0.88587 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 8.88 127.77 1.13 2.98 16 2 N -0.60 -23.22 2.86 -854.81 -2.44 -25.67 16 3 C 0.22 10.41 4.25 85.63 0.36 10.77 16 4 C -0.54 -30.95 9.94 25.60 0.25 -30.70 16 5 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 6 C 0.01 0.68 5.47 84.66 0.46 1.15 16 7 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 8 Si 0.95 43.32 27.47 68.60 1.88 45.21 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 12 C 0.55 21.67 7.34 86.72 0.64 22.31 16 13 O -0.59 -28.77 16.46 -3.96 -0.07 -28.84 16 14 C -0.13 -3.60 5.23 -20.08 -0.11 -3.70 16 15 C -0.06 -1.57 9.61 22.52 0.22 -1.35 16 16 C -0.09 -1.67 9.99 22.30 0.22 -1.45 16 17 C 0.10 2.00 6.83 38.59 0.26 2.26 16 18 C 0.08 1.50 7.24 38.34 0.28 1.77 16 19 C -0.06 -1.34 7.57 22.60 0.17 -1.17 16 20 N -0.63 -11.21 6.16 -317.53 -1.96 -13.17 16 21 H 0.45 5.54 8.96 -92.71 -0.83 4.71 16 22 C 0.67 15.23 8.82 179.15 1.58 16.81 16 23 O -0.59 -17.13 17.52 -4.28 -0.07 -17.21 16 24 N -0.54 -9.87 3.17 -671.80 -2.13 -12.00 16 25 C 0.09 0.95 11.14 127.77 1.42 2.37 16 26 H 0.09 1.65 6.90 -2.38 -0.02 1.63 16 27 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 28 H 0.08 1.96 5.80 -2.38 -0.01 1.94 16 29 H 0.06 2.34 7.13 -2.39 -0.02 2.32 16 30 H 0.02 1.19 6.79 -2.39 -0.02 1.17 16 31 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 32 H 0.13 3.61 8.05 -2.91 -0.02 3.58 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.16 2.73 5.32 -2.91 -0.02 2.71 16 35 H 0.09 1.10 7.66 -2.39 -0.02 1.08 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.67 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -82.20 316.02 2.65 -79.55 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.24 Total: 8.62 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.90 Total: 22.06 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -6.23 Total: -109.38 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.14 Total: -46.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -82.20 2.65 -79.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126729818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.198 kcal (2) G-P(sol) polarization free energy of solvation -82.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds