Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47531 * 2 1 4 4 C 1.39282 * 125.82221 * 269.97862 * 3 2 1 5 5 C 1.38659 * 133.33318 * 359.97314 * 4 3 2 6 6 C 1.38116 * 119.85011 * 179.17498 * 5 4 3 7 7 C 1.38439 * 120.27972 * 0.73797 * 6 5 4 8 8 C 1.38106 * 120.28230 * 359.54115 * 7 6 5 9 9 C 1.38659 * 119.85183 * 0.02562 * 8 7 6 10 10 N 1.39289 * 133.33291 * 180.02562 * 9 8 7 11 11 C 1.46497 * 125.81948 * 359.95904 * 10 9 8 12 12 C 1.50694 * 109.47115 * 269.71790 * 11 10 9 13 13 O 1.21297 * 120.00199 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99735 * 179.72439 * 14 12 11 16 16 H 1.07998 * 120.00618 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99464 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99669 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47319 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46816 * 120.00520 * 19 17 15 22 22 H 1.48501 * 109.47099 * 240.00173 * 19 17 15 23 23 C 1.34642 * 125.81594 * 89.97084 * 3 2 1 24 24 O 1.21686 * 125.16405 * 0.02805 * 23 3 2 25 25 H 1.08994 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47365 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.46870 * 59.99856 * 1 2 3 28 28 H 1.09009 * 109.47006 * 239.99712 * 2 1 3 29 29 H 1.09001 * 109.46697 * 120.00639 * 2 1 3 30 30 H 1.07998 * 120.07782 * 0.02824 * 5 4 3 31 31 H 1.07999 * 119.86063 * 180.28628 * 6 5 4 32 32 H 1.07998 * 119.86236 * 179.56872 * 7 6 5 33 33 H 1.08004 * 120.07298 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46734 * 149.71906 * 11 10 9 35 35 H 1.09002 * 109.47081 * 29.71677 * 11 10 9 36 36 H 0.97000 * 119.99339 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99610 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2906 2.1495 -1.1293 5 6 2.2045 1.9032 -2.4912 6 6 2.5375 2.8961 -3.3917 7 6 2.9713 4.1309 -2.9405 8 6 3.0658 4.3835 -1.5860 9 6 2.7251 3.3960 -0.6743 10 7 2.7126 3.3432 0.7175 11 6 3.0969 4.4311 1.6202 12 6 4.5683 4.3311 1.9295 13 8 5.2309 3.4385 1.4441 14 7 5.1481 5.2329 2.7465 15 6 6.4856 5.1386 3.0323 16 1 7.0748 4.3420 2.6027 17 6 7.0833 6.0686 3.8741 18 7 6.3664 7.0381 4.3965 19 14 8.9059 5.9405 4.2631 20 1 9.4819 4.7689 3.5556 21 1 9.5954 7.1775 3.8163 22 1 9.0890 5.7732 5.7272 23 6 2.2805 2.1241 1.0918 24 8 2.1482 1.7503 2.2422 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.8647 0.9418 -2.8469 31 1 2.4661 2.7059 -4.4524 32 1 3.2366 4.9001 -3.6507 33 1 3.4050 5.3480 -1.2378 34 1 2.5252 4.3547 2.5451 35 1 2.8902 5.3892 1.1432 36 1 4.6179 5.9460 3.1355 37 1 6.7837 7.6871 4.9845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133888233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -5.379380 kcal Electronic energy + Delta-G solvation = -22784.195493 eV Core-core repulsion = 19334.577400 eV Total energy + Delta-G solvation = -3449.618093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.28974 -38.33949 -38.05558 -35.86119 -35.55286 -33.95756 -31.87582 -31.28116 -30.36284 -28.71089 -27.75310 -24.87485 -23.63058 -22.31860 -22.23917 -20.52215 -19.31443 -18.04841 -17.82745 -17.15300 -16.70483 -15.85357 -15.55067 -15.17209 -14.58763 -14.50503 -14.29860 -14.16187 -13.75597 -13.65089 -13.48339 -13.17262 -12.80635 -12.53292 -12.36436 -12.02968 -11.66169 -11.60179 -11.34533 -11.09342 -11.03308 -10.52631 -10.38299 -10.37041 -10.27130 -10.18749 -9.58561 -8.65247 -8.18543 -8.04062 -7.55622 -6.46916 -3.88010 1.30582 1.48369 2.28226 3.13402 3.17733 3.25402 3.32954 3.38916 3.77033 3.81362 4.15010 4.55751 4.65678 4.87727 4.96675 5.00150 5.07661 5.13487 5.21838 5.27942 5.34246 5.45053 5.56766 5.57642 5.66770 5.75312 5.85491 5.97630 6.13336 6.17274 6.43584 6.53257 6.66632 6.73307 6.95420 7.51063 7.53451 7.97431 8.44785 8.53801 9.11235 9.43972 9.94285 10.70327 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.004321 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.714137 B = 6478.091252 C = 7196.305854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.541 5.541 4 C 0.089 3.911 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.102 4.102 9 C 0.112 3.888 10 N -0.513 5.513 11 C 0.118 3.882 12 C 0.422 3.578 13 O -0.581 6.581 14 N -0.555 5.555 15 C -0.300 4.300 16 H 0.104 0.896 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.931 3.069 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.688 3.312 24 O -0.553 6.553 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.394 0.606 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 -6.257 -13.983 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.263 5.263 4 C -0.012 4.012 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.123 4.123 9 C 0.009 3.991 10 N -0.232 5.232 11 C -0.007 4.007 12 C 0.206 3.794 13 O -0.465 6.465 14 N -0.191 5.191 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.539 5.539 19 Si 0.758 3.242 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.391 3.609 24 O -0.429 6.429 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.227 0.773 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.732 -7.019 -13.191 18.998 hybrid contribution 0.711 0.488 0.613 1.058 sum -11.021 -6.531 -12.578 17.954 Atomic orbital electron populations 1.22174 0.94999 1.02636 1.02925 1.21476 0.94760 0.78863 1.04147 1.45141 1.62863 1.13734 1.04550 1.18057 1.03939 0.89908 0.89297 1.19949 1.04249 1.00302 0.88516 1.20756 1.01141 0.93029 0.98992 1.20796 1.00783 0.97500 0.94163 1.20121 1.02038 0.98333 0.91794 1.18067 1.02426 0.95225 0.83340 1.44570 1.60707 1.13547 1.04406 1.21338 0.96757 0.88231 0.94399 1.20041 0.88514 0.85734 0.85108 1.90563 1.64245 1.36087 1.55599 1.41800 1.10142 1.26097 1.41053 1.19757 0.84202 1.12537 1.26409 0.87838 1.25279 1.00582 0.95383 0.96483 1.69614 1.36811 1.15224 1.32254 0.85780 0.81856 0.78365 0.78244 1.19200 1.20625 1.20631 1.15861 0.80078 0.80480 0.84508 1.91004 1.60802 1.74132 1.16947 0.90876 0.91864 0.92136 0.89504 0.88977 0.85741 0.85410 0.85268 0.85298 0.87323 0.87747 0.77276 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.13 1.52 6.69 -4.05 -0.03 1.49 16 3 N -0.54 -8.69 2.78 -118.91 -0.33 -9.02 16 4 C 0.09 1.34 6.83 -83.80 -0.57 0.77 16 5 C -0.11 -1.25 10.02 -39.47 -0.40 -1.64 16 6 C -0.12 -1.22 10.03 -39.55 -0.40 -1.61 16 7 C -0.11 -1.26 10.03 -39.56 -0.40 -1.65 16 8 C -0.10 -1.43 10.02 -39.47 -0.40 -1.83 16 9 C 0.11 1.87 6.83 -83.80 -0.57 1.30 16 10 N -0.51 -9.87 2.27 -120.20 -0.27 -10.14 16 11 C 0.12 2.24 6.45 -5.20 -0.03 2.20 16 12 C 0.42 10.33 7.85 -10.98 -0.09 10.25 16 13 O -0.58 -16.63 16.01 5.54 0.09 -16.55 16 14 N -0.55 -14.19 5.29 -10.96 -0.06 -14.25 16 15 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 16 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 17 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 19 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.69 13.84 8.45 -87.16 -0.74 13.10 16 24 O -0.55 -12.74 17.48 5.20 0.09 -12.65 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.11 1.94 8.03 -51.93 -0.42 1.52 16 35 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -35.79 328.75 -7.77 -43.56 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.47 Total: 8.41 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -3.47 Total: 13.12 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.06 Total: -56.99 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: 0.18 Total: -29.19 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.79 -7.77 -43.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133888233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.182 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds