Wall clock time and date at job start Tue Mar 31 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47531 * 2 1 4 4 C 1.39282 * 125.82221 * 269.97862 * 3 2 1 5 5 C 1.38659 * 133.33318 * 359.97314 * 4 3 2 6 6 C 1.38116 * 119.85011 * 179.17498 * 5 4 3 7 7 C 1.38439 * 120.27972 * 0.73797 * 6 5 4 8 8 C 1.38106 * 120.28230 * 359.54115 * 7 6 5 9 9 C 1.38659 * 119.85183 * 0.02562 * 8 7 6 10 10 N 1.39289 * 133.33291 * 180.02562 * 9 8 7 11 11 C 1.46497 * 125.81948 * 359.95904 * 10 9 8 12 12 C 1.50694 * 109.47115 * 269.71790 * 11 10 9 13 13 O 1.21297 * 120.00199 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99735 * 179.72439 * 14 12 11 16 16 H 1.07998 * 120.00618 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99464 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99669 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47319 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46816 * 120.00520 * 19 17 15 22 22 H 1.48501 * 109.47099 * 240.00173 * 19 17 15 23 23 C 1.34642 * 125.81594 * 89.97084 * 3 2 1 24 24 O 1.21686 * 125.16405 * 0.02805 * 23 3 2 25 25 H 1.08994 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47365 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.46870 * 59.99856 * 1 2 3 28 28 H 1.09009 * 109.47006 * 239.99712 * 2 1 3 29 29 H 1.09001 * 109.46697 * 120.00639 * 2 1 3 30 30 H 1.07998 * 120.07782 * 0.02824 * 5 4 3 31 31 H 1.07999 * 119.86063 * 180.28628 * 6 5 4 32 32 H 1.07998 * 119.86236 * 179.56872 * 7 6 5 33 33 H 1.08004 * 120.07298 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46734 * 149.71906 * 11 10 9 35 35 H 1.09002 * 109.47081 * 29.71677 * 11 10 9 36 36 H 0.97000 * 119.99339 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99610 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2906 2.1495 -1.1293 5 6 2.2045 1.9032 -2.4912 6 6 2.5375 2.8961 -3.3917 7 6 2.9713 4.1309 -2.9405 8 6 3.0658 4.3835 -1.5860 9 6 2.7251 3.3960 -0.6743 10 7 2.7126 3.3432 0.7175 11 6 3.0969 4.4311 1.6202 12 6 4.5683 4.3311 1.9295 13 8 5.2309 3.4385 1.4441 14 7 5.1481 5.2329 2.7465 15 6 6.4856 5.1386 3.0323 16 1 7.0748 4.3420 2.6027 17 6 7.0833 6.0686 3.8741 18 7 6.3664 7.0381 4.3965 19 14 8.9059 5.9405 4.2631 20 1 9.4819 4.7689 3.5556 21 1 9.5954 7.1775 3.8163 22 1 9.0890 5.7732 5.7272 23 6 2.2805 2.1241 1.0918 24 8 2.1482 1.7503 2.2422 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.8647 0.9418 -2.8469 31 1 2.4661 2.7059 -4.4524 32 1 3.2366 4.9001 -3.6507 33 1 3.4050 5.3480 -1.2378 34 1 2.5252 4.3547 2.5451 35 1 2.8902 5.3892 1.1432 36 1 4.6179 5.9460 3.1355 37 1 6.7837 7.6871 4.9845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133888233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:23 Heat of formation + Delta-G solvation = -29.104672 kcal Electronic energy + Delta-G solvation = -22785.224299 eV Core-core repulsion = 19334.577400 eV Total energy + Delta-G solvation = -3450.646899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.52581 -40.21030 -39.32330 -37.09624 -36.90557 -36.00146 -33.48215 -32.81504 -31.45141 -29.77644 -29.19592 -26.75666 -24.73352 -23.45894 -23.36451 -21.93262 -20.97822 -20.04564 -18.94360 -18.39492 -18.34478 -17.16531 -17.09985 -16.74049 -16.28918 -15.93844 -15.59783 -15.41297 -15.23481 -14.85511 -14.66865 -14.54837 -14.12543 -13.83642 -13.59587 -13.32029 -13.21503 -12.90327 -12.86578 -12.50275 -12.22894 -12.15962 -11.96739 -11.83426 -11.65126 -11.61261 -11.45006 -10.52467 -10.12457 -9.30260 -8.78105 -8.54007 -6.04508 0.30595 0.47854 1.02834 1.31240 1.38599 1.52875 1.76812 1.86467 2.18532 2.27988 2.83091 3.08573 3.10715 3.52967 3.64658 3.94893 4.02253 4.11119 4.15078 4.21168 4.31086 4.37111 4.41270 4.49205 4.53555 4.78195 4.88374 4.93836 5.16284 5.18967 5.32043 5.33907 5.55952 5.61358 5.73535 5.86306 5.88962 6.33343 6.46949 7.00776 7.06695 7.39633 7.94434 8.62622 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.004321 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.714137 B = 6478.091252 C = 7196.305854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 N -0.535 5.535 4 C 0.069 3.931 5 C -0.101 4.101 6 C -0.104 4.104 7 C -0.105 4.105 8 C -0.119 4.119 9 C 0.066 3.934 10 N -0.523 5.523 11 C 0.128 3.872 12 C 0.420 3.580 13 O -0.627 6.627 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.995 3.005 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.270 1.270 23 C 0.665 3.335 24 O -0.604 6.604 25 H 0.102 0.898 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.400 0.600 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 -6.199 -16.930 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 N -0.257 5.257 4 C -0.031 4.031 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.034 4.034 10 N -0.242 5.242 11 C 0.002 3.998 12 C 0.206 3.794 13 O -0.515 6.515 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.553 5.553 19 Si 0.818 3.182 20 H -0.201 1.201 21 H -0.189 1.189 22 H -0.195 1.195 23 C 0.368 3.632 24 O -0.485 6.485 25 H 0.121 0.879 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.093 0.907 30 H 0.178 0.822 31 H 0.190 0.810 32 H 0.179 0.821 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.235 0.765 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.168 -6.937 -16.198 21.414 hybrid contribution 0.817 0.478 1.361 1.658 sum -11.351 -6.459 -14.837 19.766 Atomic orbital electron populations 1.22101 0.93130 1.04293 1.02078 1.21867 0.96337 0.77063 1.04978 1.45281 1.61941 1.14584 1.03860 1.18498 1.05057 0.89218 0.90343 1.20466 1.02756 1.02200 0.86721 1.21334 0.98248 0.91761 1.00943 1.21269 0.99067 0.98932 0.93185 1.20400 1.02624 0.97992 0.92956 1.18559 1.05216 0.97313 0.82319 1.44610 1.60564 1.13234 1.05753 1.21261 0.92405 0.90415 0.95688 1.20976 0.90604 0.84275 0.83557 1.90515 1.66136 1.37722 1.57077 1.41822 1.09651 1.26632 1.41422 1.19669 0.85477 1.13144 1.28434 0.90647 1.26064 1.04723 0.94492 0.95443 1.69663 1.38426 1.15283 1.31965 0.84855 0.76609 0.78472 0.78276 1.20106 1.18862 1.19499 1.16252 0.80768 0.81245 0.84925 1.90929 1.63322 1.75271 1.18951 0.87895 0.94583 0.90989 0.86012 0.90742 0.82238 0.80997 0.82059 0.85477 0.86690 0.83853 0.76543 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.24 71.98 0.74 -2.11 16 2 C 0.12 2.70 6.69 86.38 0.58 3.28 16 3 N -0.54 -17.40 2.78 -648.41 -1.81 -19.21 16 4 C 0.07 2.01 6.83 38.39 0.26 2.27 16 5 C -0.10 -1.92 10.02 22.34 0.22 -1.69 16 6 C -0.10 -1.60 10.03 22.29 0.22 -1.38 16 7 C -0.11 -1.98 10.03 22.29 0.22 -1.75 16 8 C -0.12 -3.22 10.02 22.34 0.22 -3.00 16 9 C 0.07 2.22 6.83 38.39 0.26 2.49 16 10 N -0.52 -20.91 2.27 -652.49 -1.48 -22.39 16 11 C 0.13 5.03 6.45 85.63 0.55 5.59 16 12 C 0.42 21.56 7.85 87.65 0.69 22.25 16 13 O -0.63 -37.91 16.01 -3.08 -0.05 -37.96 16 14 N -0.56 -29.75 5.29 -306.97 -1.62 -31.38 16 15 C -0.34 -19.77 9.68 84.04 0.81 -18.95 16 16 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 17 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 18 N -0.91 -49.38 13.05 21.66 0.28 -49.10 16 19 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.67 28.23 8.45 179.14 1.51 29.74 16 24 O -0.60 -29.88 17.48 -4.30 -0.08 -29.96 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 30 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.12 4.33 8.03 -2.39 -0.02 4.31 16 35 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 36 H 0.40 19.84 7.90 -92.71 -0.73 19.10 16 37 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -83.31 328.75 4.41 -78.90 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.37 Total: 28.73 kcal Atomic # 6 Polarization: 30.08 SS G_CDS: 6.77 Total: 36.85 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -4.63 Total: -122.07 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -0.12 Total: -67.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -83.31 4.41 -78.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133888233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.791 kcal (2) G-P(sol) polarization free energy of solvation -83.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds