Wall clock time and date at job start Tue Mar 31 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86793 * 120.00130 * 2 1 4 4 H 1.48508 * 109.47221 * 274.98340 * 3 2 1 5 5 H 1.48500 * 109.47369 * 34.98462 * 3 2 1 6 6 H 1.48507 * 109.47161 * 154.98486 * 3 2 1 7 7 C 1.39897 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99710 * 158.26953 * 7 2 1 9 9 C 1.41155 * 120.00096 * 338.26209 * 7 2 1 10 10 C 1.40867 * 120.16349 * 154.82516 * 9 7 2 11 11 C 1.36378 * 119.82822 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.17055 * 0.02562 * 11 10 9 13 13 N 1.39234 * 119.83523 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00132 * 143.85354 * 13 12 11 15 15 O 1.21582 * 120.00449 * 5.72412 * 14 13 12 16 16 N 1.34780 * 120.00216 * 185.72797 * 14 13 12 17 17 C 1.46502 * 120.00051 * 175.20755 * 16 14 13 18 18 C 1.50700 * 115.54739 * 300.11808 * 17 16 14 19 19 N 1.34779 * 120.00106 * 298.54112 * 18 17 16 20 20 O 1.21282 * 119.99670 * 118.82463 * 18 17 16 21 21 C 1.53000 * 117.52057 * 85.81915 * 17 16 14 22 22 C 1.53000 * 117.49792 * 154.45006 * 17 16 14 23 23 C 1.39480 * 120.32988 * 0.24793 * 12 11 10 24 24 C 1.36380 * 120.17008 * 359.45350 * 23 12 11 25 25 H 0.97000 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.08580 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.91509 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00095 * 323.85435 * 13 12 11 29 29 H 0.96996 * 119.99971 * 355.20348 * 16 14 13 30 30 H 0.96996 * 119.99743 * 174.84416 * 19 18 17 31 31 H 0.96995 * 119.99629 * 354.84239 * 19 18 17 32 32 H 1.08996 * 117.50310 * 214.97285 * 21 17 16 33 33 H 1.09003 * 117.49668 * 359.97438 * 21 17 16 34 34 H 1.09001 * 117.49608 * 359.97089 * 22 17 16 35 35 H 1.08999 * 117.49765 * 144.99561 * 22 17 16 36 36 H 1.08003 * 119.91613 * 179.70318 * 23 12 11 37 37 H 1.07999 * 120.08447 * 180.25191 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4970 2.6199 0.8027 6 1 3.5892 1.4119 0.5921 7 6 2.0083 -1.2116 0.0005 8 1 3.0306 -1.2450 -0.3457 9 6 1.3777 -2.3903 0.4538 10 6 1.8160 -3.6484 -0.0040 11 6 1.2015 -4.7828 0.4380 12 6 0.1414 -4.6997 1.3406 13 7 -0.4813 -5.8623 1.7869 14 6 -0.9227 -5.9452 3.0576 15 8 -0.8721 -4.9712 3.7836 16 7 -1.4203 -7.1078 3.5237 17 6 -1.8025 -7.2285 4.9329 18 6 -0.6958 -6.9946 5.9287 19 7 0.3876 -7.7964 5.9329 20 8 -0.7825 -6.0881 6.7297 21 6 -3.2116 -6.7790 5.3242 22 6 -2.8658 -8.2690 5.2898 23 6 -0.3019 -3.4573 1.7940 24 6 0.3066 -2.3144 1.3656 25 1 -0.4850 0.8401 -0.0004 26 1 2.6364 -3.7144 -0.7031 27 1 1.5366 -5.7481 0.0883 28 1 -0.5974 -6.6127 1.1833 29 1 -1.5254 -7.8646 2.9262 30 1 1.1328 -7.6014 6.5224 31 1 0.4219 -8.5682 5.3465 32 1 -3.3383 -6.3141 6.3019 33 1 -3.8546 -6.3929 4.5332 34 1 -3.2814 -8.8635 4.4761 35 1 -2.7650 -8.7844 6.2450 36 1 -1.1265 -3.4004 2.4892 37 1 -0.0351 -1.3534 1.7207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155614313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:27 Heat of formation + Delta-G solvation = -11.102948 kcal Electronic energy + Delta-G solvation = -22260.042278 eV Core-core repulsion = 18810.175992 eV Total energy + Delta-G solvation = -3449.866285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52104 -39.22656 -37.45856 -36.51920 -34.36174 -33.65200 -33.18259 -32.28947 -29.43069 -28.82491 -25.18705 -24.27192 -22.81078 -21.87039 -21.19368 -20.14958 -19.67858 -18.00813 -17.83540 -17.27194 -16.99397 -16.27081 -15.52118 -15.20617 -15.00298 -14.40362 -14.18456 -13.91045 -13.82403 -13.37610 -13.03228 -12.64073 -12.02662 -11.85338 -11.78943 -11.43451 -11.27708 -11.12074 -11.06918 -10.96952 -10.63379 -10.07794 -10.00486 -9.71321 -9.66129 -9.44101 -9.06524 -8.94001 -8.86521 -7.47551 -6.98940 -6.72148 -4.24645 2.34284 2.70493 2.85614 3.09086 3.10835 3.15186 3.20221 3.32686 3.54405 3.75909 3.96858 4.46932 4.55427 4.64404 4.71434 4.75006 5.23381 5.27836 5.73859 5.76522 5.88270 6.16856 6.39796 6.47289 6.70397 6.79706 6.86088 7.08500 7.13666 7.24071 7.32132 7.35092 7.66113 7.86448 8.02707 8.10452 8.23727 8.30473 8.48029 8.66952 8.92121 8.95367 9.12666 10.20004 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.003527 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.059339 B = 7936.019992 C = 8171.516436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.108 3.892 10 C -0.218 4.218 11 C -0.103 4.103 12 C 0.006 3.994 13 N -0.663 5.663 14 C 0.690 3.310 15 O -0.554 6.554 16 N -0.718 5.718 17 C 0.094 3.906 18 C 0.556 3.444 19 N -0.850 5.850 20 O -0.518 6.518 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.082 4.082 24 C -0.158 4.158 25 H 0.281 0.719 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.389 0.611 29 H 0.396 0.604 30 H 0.402 0.598 31 H 0.399 0.601 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -17.496 5.671 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.238 4.238 11 C -0.124 4.124 12 C -0.086 4.086 13 N -0.309 5.309 14 C 0.391 3.609 15 O -0.428 6.428 16 N -0.377 5.377 17 C 0.001 3.999 18 C 0.338 3.662 19 N -0.413 5.413 20 O -0.391 6.391 21 C -0.183 4.183 22 C -0.198 4.198 23 C -0.102 4.102 24 C -0.178 4.178 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.222 0.778 29 H 0.231 0.769 30 H 0.233 0.767 31 H 0.227 0.773 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.509 -15.759 6.798 17.745 hybrid contribution 0.621 -0.332 -0.867 1.117 sum -3.888 -16.091 5.931 17.584 Atomic orbital electron populations 1.69875 1.07696 1.29394 1.34080 1.25912 0.94628 1.01332 0.92165 0.86379 0.80998 0.80877 0.78961 1.19622 1.19980 1.18358 1.19512 0.99723 0.91921 1.38044 0.90358 1.17639 0.90930 0.92021 0.88847 1.20497 1.04769 0.92479 1.06046 1.19998 0.95314 0.97110 0.99942 1.16932 1.00082 0.84080 1.07547 1.41997 1.61706 1.17622 1.09613 1.16081 0.79155 0.83072 0.82593 1.91008 1.59991 1.34807 1.57033 1.44376 1.71266 1.14218 1.07812 1.20090 0.89720 1.08040 0.82002 1.19470 0.82490 0.81027 0.83249 1.43694 1.20361 1.31214 1.46058 1.90758 1.78346 1.30464 1.39530 1.23332 0.95138 0.95258 1.04532 1.23407 0.99357 0.93232 1.03797 1.20554 0.99375 0.91174 0.99131 1.20883 1.00230 0.96782 0.99920 0.90801 0.88677 0.89339 0.77772 0.76852 0.76698 0.77288 0.87104 0.87433 0.87289 0.87385 0.87495 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.86 11.24 55.55 0.62 -20.23 16 2 C 0.08 2.02 5.03 -17.34 -0.09 1.93 16 3 Si 0.90 19.06 29.61 -169.99 -5.03 14.03 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.52 9.01 -37.85 -0.34 -12.86 16 8 H 0.08 2.02 7.93 -52.49 -0.42 1.60 16 9 C 0.11 2.96 5.55 -106.80 -0.59 2.37 16 10 C -0.22 -5.35 9.74 -39.26 -0.38 -5.73 16 11 C -0.10 -2.28 9.90 -39.79 -0.39 -2.67 16 12 C 0.01 0.14 6.29 -83.57 -0.53 -0.39 16 13 N -0.66 -11.64 5.31 -14.10 -0.07 -11.71 16 14 C 0.69 12.42 8.21 -86.92 -0.71 11.71 16 15 O -0.55 -13.01 13.26 5.29 0.07 -12.94 16 16 N -0.72 -8.67 5.47 -53.50 -0.29 -8.97 16 17 C 0.09 1.13 2.19 -132.97 -0.29 0.84 16 18 C 0.56 8.09 6.75 -10.98 -0.07 8.01 16 19 N -0.85 -8.56 8.87 31.22 0.28 -8.28 16 20 O -0.52 -10.05 17.43 5.56 0.10 -9.95 16 21 C -0.14 -1.65 9.97 -26.73 -0.27 -1.92 16 22 C -0.16 -1.21 10.16 -26.73 -0.27 -1.48 16 23 C -0.08 -2.12 8.61 -39.79 -0.34 -2.46 16 24 C -0.16 -4.37 8.65 -39.26 -0.34 -4.71 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 26 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.39 5.13 8.84 -40.82 -0.36 4.77 16 29 H 0.40 3.14 8.85 -40.82 -0.36 2.78 16 30 H 0.40 3.76 8.93 -40.82 -0.36 3.39 16 31 H 0.40 2.71 8.83 -40.82 -0.36 2.35 16 32 H 0.11 1.37 7.92 -51.93 -0.41 0.96 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 2.83 6.26 -52.48 -0.33 2.50 16 37 H 0.11 3.25 6.35 -52.49 -0.33 2.92 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -35.92 325.33 -8.24 -44.16 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -4.18 Total: 16.36 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -4.62 Total: -7.36 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.53 Total: -49.20 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.17 Total: -22.89 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.92 -8.24 -44.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155614313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.056 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds