Wall clock time and date at job start Tue Mar 31 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00463 * 2 1 4 4 O 1.20826 * 119.99658 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00189 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46904 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99810 * 268.98921 * 6 5 3 8 8 H 1.08000 * 119.99494 * 189.50312 * 7 6 5 9 9 C 1.38805 * 120.00113 * 9.50232 * 7 6 5 10 10 N 1.31623 * 120.00371 * 24.67478 * 9 7 6 11 11 Si 1.86807 * 120.00209 * 204.67436 * 9 7 6 12 12 H 1.48502 * 109.46972 * 59.99716 * 11 9 7 13 13 H 1.48494 * 109.47380 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46780 * 299.99916 * 11 9 7 15 15 C 1.46499 * 119.99762 * 88.99239 * 6 5 3 16 16 C 1.50697 * 109.47010 * 269.99627 * 15 6 5 17 17 C 1.35099 * 126.40983 * 95.02639 * 16 15 6 18 18 N 1.33517 * 108.62824 * 179.97438 * 17 16 15 19 19 C 1.32564 * 109.15758 * 0.02562 * 18 17 16 20 20 C 1.40934 * 132.32582 * 179.97438 * 19 18 17 21 21 C 1.36023 * 119.32529 * 180.02562 * 20 19 18 22 22 C 1.40477 * 119.69414 * 0.02562 * 21 20 19 23 23 C 1.34953 * 120.29724 * 0.20894 * 22 21 20 24 24 N 1.36479 * 120.61056 * 359.57645 * 23 22 21 25 25 H 1.09003 * 109.46582 * 59.99908 * 1 2 3 26 26 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46918 * 300.00443 * 1 2 3 28 28 H 1.08999 * 109.47556 * 59.99980 * 5 3 2 29 29 H 1.08998 * 109.47250 * 299.99702 * 5 3 2 30 30 H 0.96999 * 120.00178 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.46849 * 150.00212 * 15 6 5 32 32 H 1.09001 * 109.47541 * 30.00068 * 15 6 5 33 33 H 1.07995 * 125.68895 * 359.94736 * 17 16 15 34 34 H 1.07995 * 120.33601 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.15159 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.84700 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.69026 * 179.70942 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1955 3.3300 -1.1871 8 1 4.6468 4.3112 -1.1911 9 6 3.8323 2.7281 -2.3839 10 7 2.8855 1.8139 -2.4002 11 14 4.6871 3.2156 -3.9718 12 1 6.1412 2.9369 -3.8569 13 1 4.1202 2.4333 -5.0995 14 1 4.4790 4.6646 -4.2213 15 6 4.1685 3.3887 1.2672 16 6 2.8703 4.0347 1.6775 17 6 1.9464 3.5162 2.5158 18 7 0.9388 4.3848 2.6298 19 6 1.1954 5.4492 1.8826 20 6 0.4764 6.6379 1.6455 21 6 0.9977 7.5767 0.8105 22 6 2.2411 7.3492 0.1976 23 6 2.9157 6.2038 0.4306 24 7 2.4061 5.2556 1.2695 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9558 0.7808 -0.8908 29 1 3.9565 0.7805 0.8891 30 1 2.6314 1.3936 -3.2366 31 1 4.9334 4.1557 1.1454 32 1 4.4817 2.6821 2.0359 33 1 2.0118 2.5586 3.0109 34 1 -0.4788 6.8018 2.1220 35 1 0.4579 8.4922 0.6191 36 1 2.6575 8.0930 -0.4655 37 1 3.8686 6.0371 -0.0495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160517242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:49 Heat of formation + Delta-G solvation = 42.552538 kcal Electronic energy + Delta-G solvation = -24010.543128 eV Core-core repulsion = 20563.003519 eV Total energy + Delta-G solvation = -3447.539609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04042 -38.86878 -36.82994 -36.02515 -34.52334 -33.03941 -31.66307 -29.69912 -29.05220 -27.87017 -26.04267 -25.48231 -23.16222 -22.28994 -21.63072 -20.28654 -19.71314 -17.00719 -16.74668 -16.23203 -16.11789 -15.70876 -15.43123 -15.06634 -14.94156 -14.67154 -14.12976 -13.73772 -13.28402 -13.20016 -12.88920 -12.24474 -12.13511 -12.00965 -11.63432 -11.31019 -11.27130 -11.07006 -11.01533 -10.93155 -10.55110 -10.37018 -10.26745 -10.09866 -9.53761 -9.43416 -9.08932 -8.59983 -8.12152 -7.36601 -6.97972 -6.06339 -3.34816 1.32361 1.91353 3.24709 3.28355 3.34125 3.34520 3.63209 3.93698 4.08871 4.16611 4.37836 4.83275 5.07488 5.12564 5.27917 5.31267 5.36784 5.54025 5.79407 5.85677 5.93158 5.93611 6.04080 6.13440 6.16595 6.26065 6.29190 6.41732 6.57939 6.67069 6.74803 6.99371 7.14789 7.36571 7.49497 7.79452 7.82592 8.00972 8.58101 8.85352 9.41511 9.59029 9.96007 11.03449 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.008475 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.829136 B = 3303.003245 C = 4527.847483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.385 6.385 3 C 0.459 3.541 4 O -0.490 6.490 5 C 0.187 3.813 6 N -0.557 5.557 7 C -0.260 4.260 8 H 0.078 0.922 9 C 0.007 3.993 10 N -0.893 5.893 11 Si 0.908 3.092 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.209 3.791 16 C -0.034 4.034 17 C 0.028 3.972 18 N -0.496 5.496 19 C 0.204 3.796 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.171 4.171 23 C 0.092 3.908 24 N -0.343 5.343 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.160 0.840 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 3.916 5.959 7.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.303 6.303 3 C 0.298 3.702 4 O -0.373 6.373 5 C 0.058 3.942 6 N -0.275 5.275 7 C -0.389 4.389 8 H 0.096 0.904 9 C -0.192 4.192 10 N -0.537 5.537 11 Si 0.738 3.262 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.210 1.210 15 C 0.081 3.919 16 C -0.150 4.150 17 C -0.124 4.124 18 N -0.216 5.216 19 C -0.039 4.039 20 C -0.106 4.106 21 C -0.135 4.135 22 C -0.193 4.193 23 C -0.031 4.031 24 N -0.016 5.016 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.178 0.822 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.038 3.952 6.268 7.410 hybrid contribution 0.272 0.361 -1.820 1.876 sum 0.310 4.312 4.447 6.203 Atomic orbital electron populations 1.22803 0.79901 1.01051 1.01191 1.86522 1.20861 1.36945 1.85962 1.25351 0.93387 0.80380 0.71061 1.90541 1.66357 1.36062 1.44342 1.20509 0.85865 0.86147 1.01662 1.44520 1.74669 1.07026 1.01306 1.19137 1.34352 1.02635 0.82769 0.90448 1.24789 0.96961 0.99364 0.98080 1.69864 1.26754 1.30399 1.26664 0.86269 0.79575 0.77856 0.82540 1.20735 1.21599 1.21013 1.19605 0.89124 0.94543 0.88642 1.22763 1.03898 0.85899 1.02489 1.21811 0.90638 0.99098 1.00809 1.70528 1.26477 1.01167 1.23413 1.20715 0.87243 0.97504 0.98407 1.20071 0.99833 0.90381 1.00284 1.20820 0.95938 0.99364 0.97379 1.20584 0.96773 0.97706 1.04205 1.21577 1.00261 0.88103 0.93154 1.42531 1.16265 1.13505 1.29271 0.93177 0.90331 0.93592 0.86761 0.92826 0.92968 0.92061 0.90828 0.82246 0.84399 0.85115 0.84200 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 101.05 1.07 1.93 16 2 O -0.38 -8.49 10.56 -39.26 -0.41 -8.91 16 3 C 0.46 11.04 6.05 36.00 0.22 11.26 16 4 O -0.49 -13.27 13.33 -18.75 -0.25 -13.52 16 5 C 0.19 4.16 5.58 -5.19 -0.03 4.13 16 6 N -0.56 -12.55 2.09 -175.99 -0.37 -12.92 16 7 C -0.26 -6.42 9.70 -15.06 -0.15 -6.57 16 8 H 0.08 1.83 7.21 -52.49 -0.38 1.46 16 9 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 10 N -0.89 -24.39 9.03 55.49 0.50 -23.89 16 11 Si 0.91 20.54 29.62 -169.99 -5.04 15.51 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.21 3.97 6.14 -5.20 -0.03 3.93 16 16 C -0.03 -0.70 5.42 -81.47 -0.44 -1.14 16 17 C 0.03 0.58 10.49 -17.94 -0.19 0.39 16 18 N -0.50 -10.96 11.32 -12.78 -0.14 -11.11 16 19 C 0.20 4.26 7.81 -156.04 -1.22 3.04 16 20 C -0.09 -1.45 10.11 -39.36 -0.40 -1.85 16 21 C -0.11 -1.61 10.07 -39.53 -0.40 -2.01 16 22 C -0.17 -2.58 9.99 -39.91 -0.40 -2.98 16 23 C 0.09 1.65 10.85 -16.65 -0.18 1.47 16 24 N -0.34 -7.04 2.94 -58.46 -0.17 -7.21 16 25 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.86 8.13 -51.92 -0.42 0.44 16 28 H 0.11 2.75 6.29 -51.93 -0.33 2.42 16 29 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 33 H 0.16 3.00 8.06 -52.49 -0.42 2.58 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.16 2.65 7.34 -52.49 -0.39 2.26 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -32.96 317.48 -7.75 -40.72 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.42 Total: 4.84 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -2.23 Total: 11.70 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.18 Total: -55.13 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.66 Total: -22.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.96 -7.75 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160517242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.268 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds