Wall clock time and date at job start Tue Mar 31 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00463 * 2 1 4 4 O 1.20826 * 119.99658 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00189 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46904 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99810 * 268.98921 * 6 5 3 8 8 H 1.08000 * 119.99494 * 189.50312 * 7 6 5 9 9 C 1.38805 * 120.00113 * 9.50232 * 7 6 5 10 10 N 1.31623 * 120.00371 * 24.67478 * 9 7 6 11 11 Si 1.86807 * 120.00209 * 204.67436 * 9 7 6 12 12 H 1.48502 * 109.46972 * 59.99716 * 11 9 7 13 13 H 1.48494 * 109.47380 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46780 * 299.99916 * 11 9 7 15 15 C 1.46499 * 119.99762 * 88.99239 * 6 5 3 16 16 C 1.50697 * 109.47010 * 269.99627 * 15 6 5 17 17 C 1.35099 * 126.40983 * 95.02639 * 16 15 6 18 18 N 1.33517 * 108.62824 * 179.97438 * 17 16 15 19 19 C 1.32564 * 109.15758 * 0.02562 * 18 17 16 20 20 C 1.40934 * 132.32582 * 179.97438 * 19 18 17 21 21 C 1.36023 * 119.32529 * 180.02562 * 20 19 18 22 22 C 1.40477 * 119.69414 * 0.02562 * 21 20 19 23 23 C 1.34953 * 120.29724 * 0.20894 * 22 21 20 24 24 N 1.36479 * 120.61056 * 359.57645 * 23 22 21 25 25 H 1.09003 * 109.46582 * 59.99908 * 1 2 3 26 26 H 1.08994 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46918 * 300.00443 * 1 2 3 28 28 H 1.08999 * 109.47556 * 59.99980 * 5 3 2 29 29 H 1.08998 * 109.47250 * 299.99702 * 5 3 2 30 30 H 0.96999 * 120.00178 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.46849 * 150.00212 * 15 6 5 32 32 H 1.09001 * 109.47541 * 30.00068 * 15 6 5 33 33 H 1.07995 * 125.68895 * 359.94736 * 17 16 15 34 34 H 1.07995 * 120.33601 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.15159 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.84700 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.69026 * 179.70942 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1955 3.3300 -1.1871 8 1 4.6468 4.3112 -1.1911 9 6 3.8323 2.7281 -2.3839 10 7 2.8855 1.8139 -2.4002 11 14 4.6871 3.2156 -3.9718 12 1 6.1412 2.9369 -3.8569 13 1 4.1202 2.4333 -5.0995 14 1 4.4790 4.6646 -4.2213 15 6 4.1685 3.3887 1.2672 16 6 2.8703 4.0347 1.6775 17 6 1.9464 3.5162 2.5158 18 7 0.9388 4.3848 2.6298 19 6 1.1954 5.4492 1.8826 20 6 0.4764 6.6379 1.6455 21 6 0.9977 7.5767 0.8105 22 6 2.2411 7.3492 0.1976 23 6 2.9157 6.2038 0.4306 24 7 2.4061 5.2556 1.2695 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9558 0.7808 -0.8908 29 1 3.9565 0.7805 0.8891 30 1 2.6314 1.3936 -3.2366 31 1 4.9334 4.1557 1.1454 32 1 4.4817 2.6821 2.0359 33 1 2.0118 2.5586 3.0109 34 1 -0.4788 6.8018 2.1220 35 1 0.4579 8.4922 0.6191 36 1 2.6575 8.0930 -0.4655 37 1 3.8686 6.0371 -0.0495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160517242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:49 Heat of formation + Delta-G solvation = 23.867383 kcal Electronic energy + Delta-G solvation = -24011.353377 eV Core-core repulsion = 20563.003519 eV Total energy + Delta-G solvation = -3448.349858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.48258 -40.67315 -38.22260 -37.68552 -36.36023 -34.51069 -33.40007 -31.15984 -30.54782 -29.54097 -27.68516 -27.08443 -24.59151 -23.90117 -23.09692 -21.78876 -21.48119 -18.81396 -18.26866 -17.87422 -17.55574 -17.39530 -16.94251 -16.57084 -16.53518 -16.36917 -15.55502 -15.44399 -14.94425 -14.69551 -14.35735 -13.87650 -13.83556 -13.46613 -13.16259 -12.85876 -12.70115 -12.68362 -12.56027 -12.51012 -12.24498 -12.06067 -11.99288 -11.67209 -11.31785 -11.07058 -10.85520 -10.48826 -9.55546 -9.14464 -8.46295 -7.97137 -5.25564 0.01366 0.55394 1.46558 1.50784 1.56243 1.88824 2.13610 2.14639 2.39957 2.56635 2.76935 3.24604 3.50657 3.61803 3.76488 4.00161 4.13798 4.28097 4.35927 4.37342 4.44383 4.51152 4.53374 4.67747 4.74797 4.78026 4.88122 5.01803 5.17282 5.20504 5.31051 5.41426 5.58898 5.79792 5.88770 6.04708 6.15880 6.38790 6.97451 7.08485 7.57761 7.79054 8.12220 9.10691 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.008475 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.829136 B = 3303.003245 C = 4527.847483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.390 6.390 3 C 0.460 3.540 4 O -0.525 6.525 5 C 0.186 3.814 6 N -0.566 5.566 7 C -0.251 4.251 8 H 0.085 0.915 9 C -0.046 4.046 10 N -0.924 5.924 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.306 1.306 14 H -0.282 1.282 15 C 0.209 3.791 16 C -0.050 4.050 17 C 0.014 3.986 18 N -0.534 5.534 19 C 0.184 3.816 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.154 4.154 23 C 0.054 3.946 24 N -0.352 5.352 25 H 0.027 0.973 26 H 0.124 0.876 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 5.587 5.951 8.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.307 6.307 3 C 0.301 3.699 4 O -0.411 6.411 5 C 0.057 3.943 6 N -0.285 5.285 7 C -0.381 4.381 8 H 0.103 0.897 9 C -0.241 4.241 10 N -0.570 5.570 11 Si 0.795 3.205 12 H -0.197 1.197 13 H -0.233 1.233 14 H -0.208 1.208 15 C 0.082 3.918 16 C -0.167 4.167 17 C -0.137 4.137 18 N -0.255 5.255 19 C -0.059 4.059 20 C -0.132 4.132 21 C -0.113 4.113 22 C -0.175 4.175 23 C -0.068 4.068 24 N -0.024 5.024 25 H 0.046 0.954 26 H 0.142 0.858 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.186 0.814 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.198 0.802 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.586 5.634 6.284 8.460 hybrid contribution 0.054 -0.026 -1.766 1.767 sum 0.640 5.608 4.518 7.229 Atomic orbital electron populations 1.23003 0.78185 1.03647 0.99979 1.86496 1.22565 1.36105 1.85550 1.25707 0.94079 0.80226 0.69886 1.90521 1.67259 1.37225 1.46099 1.20558 0.84904 0.86451 1.02364 1.44652 1.74520 1.07337 1.01942 1.19457 1.32553 1.02481 0.83598 0.89746 1.25424 0.97855 1.00205 1.00614 1.70033 1.28608 1.32260 1.26109 0.85367 0.78907 0.77092 0.79180 1.19734 1.23273 1.20824 1.19814 0.88758 0.95302 0.87905 1.22827 1.04247 0.86533 1.03076 1.22033 0.90795 0.99464 1.01414 1.70469 1.27527 1.02310 1.25174 1.21390 0.87822 0.98339 0.98336 1.20505 1.00849 0.89935 1.01874 1.21402 0.95337 0.99929 0.94650 1.21206 0.96308 0.97016 1.02939 1.22014 1.01442 0.89093 0.94275 1.42690 1.16280 1.13865 1.29538 0.95370 0.85814 0.93791 0.88752 0.89086 0.94359 0.90764 0.87979 0.81439 0.82592 0.80424 0.80210 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 10.56 113.37 1.20 2.93 16 2 O -0.39 -17.20 10.56 -51.41 -0.54 -17.74 16 3 C 0.46 22.32 6.05 71.23 0.43 22.75 16 4 O -0.52 -28.95 13.33 21.96 0.29 -28.66 16 5 C 0.19 8.23 5.58 85.63 0.48 8.71 16 6 N -0.57 -25.16 2.09 -710.69 -1.48 -26.65 16 7 C -0.25 -12.26 9.70 84.03 0.81 -11.44 16 8 H 0.08 3.90 7.21 -2.91 -0.02 3.88 16 9 C -0.05 -2.36 4.89 84.86 0.41 -1.94 16 10 N -0.92 -51.45 9.03 21.65 0.20 -51.25 16 11 Si 0.97 42.40 29.62 68.60 2.03 44.44 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.31 -14.08 7.11 99.48 0.71 -13.38 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.21 7.72 6.14 85.63 0.53 8.25 16 16 C -0.05 -2.08 5.42 41.05 0.22 -1.85 16 17 C 0.01 0.58 10.49 83.71 0.88 1.45 16 18 N -0.53 -24.02 11.32 -194.35 -2.20 -26.22 16 19 C 0.18 7.66 7.81 134.10 1.05 8.71 16 20 C -0.11 -3.60 10.11 22.42 0.23 -3.37 16 21 C -0.09 -2.26 10.07 22.30 0.22 -2.04 16 22 C -0.15 -4.09 9.99 22.06 0.22 -3.87 16 23 C 0.05 1.85 10.85 83.21 0.90 2.75 16 24 N -0.35 -14.26 2.94 -338.88 -1.00 -15.26 16 25 H 0.03 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 27 H 0.04 1.64 8.13 -2.38 -0.02 1.62 16 28 H 0.09 4.58 6.29 -2.39 -0.02 4.57 16 29 H 0.09 3.25 7.91 -2.39 -0.02 3.23 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 32 H 0.10 3.11 7.90 -2.39 -0.02 3.09 16 33 H 0.17 6.44 8.06 -2.91 -0.02 6.42 16 34 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.16 5.20 7.34 -2.91 -0.02 5.18 16 Total: -1.00 -73.28 317.48 5.96 -67.32 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.08 Total: 22.98 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.58 Total: 31.03 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.48 Total: -119.37 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.25 Total: -46.40 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Total: -73.28 5.96 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160517242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.185 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds