Wall clock time and date at job start Tue Mar 31 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 119.99520 * 2 1 4 4 C 1.50699 * 109.47423 * 270.00054 * 3 2 1 5 5 H 1.07998 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00216 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00191 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99820 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47454 * 60.00036 * 8 6 4 10 10 H 1.48506 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47039 * 299.99688 * 8 6 4 12 12 C 1.34770 * 120.00160 * 180.02562 * 2 1 3 13 13 O 1.21581 * 120.00119 * 184.85677 * 12 2 1 14 14 C 1.47623 * 120.00240 * 4.86054 * 12 2 1 15 15 C 1.39865 * 120.01466 * 320.46210 * 14 12 2 16 16 C 1.37643 * 120.14471 * 180.29818 * 15 14 12 17 17 C 1.38969 * 120.04857 * 359.44643 * 16 15 14 18 18 N 1.38880 * 133.12145 * 180.18791 * 17 16 15 19 19 H 0.97002 * 125.75383 * 0.32610 * 18 17 16 20 20 C 1.34597 * 108.49038 * 180.33214 * 18 17 16 21 21 O 1.21673 * 125.14875 * 179.97438 * 20 18 17 22 22 N 1.34641 * 109.70976 * 359.97438 * 20 18 17 23 23 C 1.46507 * 125.86816 * 180.02562 * 22 20 18 24 24 C 1.39375 * 108.26210 * 0.02562 * 22 20 18 25 25 C 1.38246 * 133.22874 * 179.97438 * 24 22 20 26 26 H 1.08994 * 109.46986 * 265.90322 * 1 2 3 27 27 H 1.08999 * 109.47380 * 25.90937 * 1 2 3 28 28 H 1.09005 * 109.46804 * 145.91160 * 1 2 3 29 29 H 1.09000 * 109.47732 * 30.00149 * 3 2 1 30 30 H 1.08997 * 109.47230 * 150.00309 * 3 2 1 31 31 H 0.97000 * 120.00393 * 179.97438 * 7 6 4 32 32 H 1.07999 * 119.93157 * 0.02562 * 15 14 12 33 33 H 1.07996 * 119.97727 * 179.70564 * 16 15 14 34 34 H 1.08996 * 109.46798 * 270.00067 * 23 22 20 35 35 H 1.08993 * 109.47224 * 29.99905 * 23 22 20 36 36 H 1.08998 * 109.46840 * 149.99968 * 23 22 20 37 37 H 1.08001 * 120.13909 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6732 8 14 3.4374 3.4172 -3.4339 9 1 2.1396 3.5956 -4.1333 10 1 4.1810 4.7027 -3.4339 11 1 4.2392 2.3822 -4.1346 12 6 2.1390 -1.1671 -0.0005 13 8 3.3515 -1.1690 0.0886 14 6 1.4049 -2.4433 -0.1094 15 6 0.1930 -2.6133 0.5678 16 6 -0.4906 -3.8042 0.4731 17 6 0.0164 -4.8376 -0.3056 18 7 -0.4345 -6.1195 -0.5922 19 1 -1.2535 -6.5196 -0.2605 20 6 0.4568 -6.7131 -1.4077 21 8 0.3599 -7.8438 -1.8466 22 7 1.4717 -5.8664 -1.6643 23 6 2.6329 -6.1501 -2.5114 24 6 1.2277 -4.6738 -0.9856 25 6 1.9200 -3.4811 -0.8882 26 1 -0.3633 -0.0734 1.0250 27 1 -0.3634 0.9243 -0.4490 28 1 -0.3633 -0.8511 -0.5760 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0323 4.4428 -0.8504 32 1 -0.2052 -1.8100 1.1699 33 1 -1.4237 -3.9343 1.0009 34 1 3.4287 -6.5815 -1.9042 35 1 2.3492 -6.8550 -3.2927 36 1 2.9848 -5.2246 -2.9672 37 1 2.8557 -3.3529 -1.4120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160947660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:24 Heat of formation + Delta-G solvation = 5.041565 kcal Electronic energy + Delta-G solvation = -22412.790992 eV Core-core repulsion = 18963.624785 eV Total energy + Delta-G solvation = -3449.166207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65350 -39.58926 -37.91484 -35.90515 -35.20808 -34.94346 -32.65346 -30.68789 -29.76170 -27.96338 -27.32823 -26.06216 -23.89082 -22.70640 -22.21843 -21.54480 -19.36569 -18.19234 -17.88667 -16.75539 -16.56043 -16.20701 -16.03807 -15.49430 -15.04752 -14.73377 -14.35163 -14.19610 -14.02168 -13.75815 -13.51149 -13.10518 -12.73316 -12.61681 -12.32344 -12.19603 -11.75839 -11.32314 -11.23268 -11.08628 -10.96338 -10.80503 -10.66237 -10.47228 -10.20277 -9.69712 -9.13359 -8.60895 -8.46991 -7.99617 -7.71974 -6.08138 -4.13509 0.88892 1.11638 2.06912 2.68576 3.03343 3.17120 3.29661 3.34400 3.36923 3.68632 3.98939 4.29903 4.41232 4.59231 4.78313 4.98408 5.05104 5.11814 5.17930 5.26291 5.29778 5.39383 5.49019 5.66142 5.77644 5.88260 6.02981 6.17751 6.25061 6.29280 6.41578 6.61515 7.00096 7.03244 7.38914 7.46261 7.87807 7.97657 8.18010 8.30513 8.82472 8.98239 9.51793 10.99891 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003839 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.317460 B = 7292.380893 C = 7908.605469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.549 3.451 13 O -0.535 6.535 14 C -0.103 4.103 15 C -0.085 4.085 16 C -0.113 4.113 17 C 0.099 3.901 18 N -0.641 5.641 19 H 0.434 0.566 20 C 0.681 3.319 21 O -0.561 6.561 22 N -0.539 5.539 23 C 0.099 3.901 24 C 0.080 3.920 25 C -0.051 4.051 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -15.202 1.615 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.335 3.665 13 O -0.413 6.413 14 C -0.108 4.108 15 C -0.105 4.105 16 C -0.134 4.134 17 C -0.004 4.004 18 N -0.286 5.286 19 H 0.275 0.725 20 C 0.382 3.618 21 O -0.438 6.438 22 N -0.262 5.262 23 C -0.043 4.043 24 C -0.020 4.020 25 C -0.073 4.073 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.944 -15.824 1.269 18.221 hybrid contribution -0.256 0.225 -0.866 0.931 sum -9.200 -15.599 0.403 18.115 Atomic orbital electron populations 1.21996 0.81453 1.03295 1.00049 1.48067 1.06289 1.07553 1.70422 1.19356 0.92752 0.77706 0.97629 1.21397 1.36842 1.06478 0.92215 0.92417 1.24925 0.95271 0.96332 0.97448 1.69914 1.38121 1.14390 1.30829 0.86558 0.78388 0.77869 0.84605 1.20216 1.21143 1.20168 1.17973 0.87106 0.83167 0.78238 1.90776 1.13453 1.86991 1.50049 1.19905 0.95882 0.95181 0.99834 1.21426 0.93307 0.96940 0.98802 1.19970 1.01591 0.91179 1.00652 1.18130 0.94416 0.86987 1.00905 1.42840 1.24790 1.13224 1.47712 0.72463 1.15906 0.80376 0.84403 0.81076 1.91055 1.78076 1.16050 1.58620 1.44965 1.22563 1.12289 1.46350 1.21793 0.85237 1.03243 0.93989 1.17866 0.96072 0.89159 0.98949 1.20042 0.99586 0.88726 0.98923 0.93352 0.90579 0.91678 0.94711 0.93505 0.92581 0.83440 0.84642 0.91056 0.89451 0.89461 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.88 59.85 0.53 1.63 16 2 N -0.59 -11.93 2.86 -184.16 -0.53 -12.46 16 3 C 0.24 6.15 5.18 -5.20 -0.03 6.13 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.55 11.03 7.33 -12.43 -0.09 10.94 16 13 O -0.53 -13.07 16.47 5.29 0.09 -12.98 16 14 C -0.10 -1.55 5.23 -104.95 -0.55 -2.10 16 15 C -0.08 -0.96 7.54 -39.19 -0.30 -1.25 16 16 C -0.11 -1.05 10.05 -39.53 -0.40 -1.45 16 17 C 0.10 1.08 7.25 -83.78 -0.61 0.47 16 18 N -0.64 -6.54 6.12 -14.27 -0.09 -6.63 16 19 H 0.43 3.07 8.96 -40.82 -0.37 2.71 16 20 C 0.68 8.95 8.82 -87.20 -0.77 8.18 16 21 O -0.56 -8.92 17.77 5.21 0.09 -8.83 16 22 N -0.54 -6.58 3.19 -126.36 -0.40 -6.99 16 23 C 0.10 0.92 11.01 59.85 0.66 1.58 16 24 C 0.08 1.01 6.82 -83.81 -0.57 0.44 16 25 C -0.05 -0.72 9.59 -39.07 -0.37 -1.09 16 26 H 0.05 0.56 6.91 -51.93 -0.36 0.20 16 27 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 28 H 0.06 0.81 5.80 -51.93 -0.30 0.51 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.15 1.43 5.32 -52.49 -0.28 1.15 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.76 8.03 -51.93 -0.42 0.35 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.14 1.98 8.05 -52.49 -0.42 1.56 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -35.28 320.11 -7.39 -42.67 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.18 Total: -0.90 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -2.91 Total: 10.21 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.28 Total: -51.29 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.28 -7.39 -42.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160947660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds