Wall clock time and date at job start Tue Mar 31 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 119.99520 * 2 1 4 4 C 1.50699 * 109.47423 * 270.00054 * 3 2 1 5 5 H 1.07998 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00216 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00191 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99820 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47454 * 60.00036 * 8 6 4 10 10 H 1.48506 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47039 * 299.99688 * 8 6 4 12 12 C 1.34770 * 120.00160 * 180.02562 * 2 1 3 13 13 O 1.21581 * 120.00119 * 184.85677 * 12 2 1 14 14 C 1.47623 * 120.00240 * 4.86054 * 12 2 1 15 15 C 1.39865 * 120.01466 * 320.46210 * 14 12 2 16 16 C 1.37643 * 120.14471 * 180.29818 * 15 14 12 17 17 C 1.38969 * 120.04857 * 359.44643 * 16 15 14 18 18 N 1.38880 * 133.12145 * 180.18791 * 17 16 15 19 19 H 0.97002 * 125.75383 * 0.32610 * 18 17 16 20 20 C 1.34597 * 108.49038 * 180.33214 * 18 17 16 21 21 O 1.21673 * 125.14875 * 179.97438 * 20 18 17 22 22 N 1.34641 * 109.70976 * 359.97438 * 20 18 17 23 23 C 1.46507 * 125.86816 * 180.02562 * 22 20 18 24 24 C 1.39375 * 108.26210 * 0.02562 * 22 20 18 25 25 C 1.38246 * 133.22874 * 179.97438 * 24 22 20 26 26 H 1.08994 * 109.46986 * 265.90322 * 1 2 3 27 27 H 1.08999 * 109.47380 * 25.90937 * 1 2 3 28 28 H 1.09005 * 109.46804 * 145.91160 * 1 2 3 29 29 H 1.09000 * 109.47732 * 30.00149 * 3 2 1 30 30 H 1.08997 * 109.47230 * 150.00309 * 3 2 1 31 31 H 0.97000 * 120.00393 * 179.97438 * 7 6 4 32 32 H 1.07999 * 119.93157 * 0.02562 * 15 14 12 33 33 H 1.07996 * 119.97727 * 179.70564 * 16 15 14 34 34 H 1.08996 * 109.46798 * 270.00067 * 23 22 20 35 35 H 1.08993 * 109.47224 * 29.99905 * 23 22 20 36 36 H 1.08998 * 109.46840 * 149.99968 * 23 22 20 37 37 H 1.08001 * 120.13909 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6732 8 14 3.4374 3.4172 -3.4339 9 1 2.1396 3.5956 -4.1333 10 1 4.1810 4.7027 -3.4339 11 1 4.2392 2.3822 -4.1346 12 6 2.1390 -1.1671 -0.0005 13 8 3.3515 -1.1690 0.0886 14 6 1.4049 -2.4433 -0.1094 15 6 0.1930 -2.6133 0.5678 16 6 -0.4906 -3.8042 0.4731 17 6 0.0164 -4.8376 -0.3056 18 7 -0.4345 -6.1195 -0.5922 19 1 -1.2535 -6.5196 -0.2605 20 6 0.4568 -6.7131 -1.4077 21 8 0.3599 -7.8438 -1.8466 22 7 1.4717 -5.8664 -1.6643 23 6 2.6329 -6.1501 -2.5114 24 6 1.2277 -4.6738 -0.9856 25 6 1.9200 -3.4811 -0.8882 26 1 -0.3633 -0.0734 1.0250 27 1 -0.3634 0.9243 -0.4490 28 1 -0.3633 -0.8511 -0.5760 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0323 4.4428 -0.8504 32 1 -0.2052 -1.8100 1.1699 33 1 -1.4237 -3.9343 1.0009 34 1 3.4287 -6.5815 -1.9042 35 1 2.3492 -6.8550 -3.2927 36 1 2.9848 -5.2246 -2.9672 37 1 2.8557 -3.3529 -1.4120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160947660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:24 Heat of formation + Delta-G solvation = -19.891370 kcal Electronic energy + Delta-G solvation = -22413.872165 eV Core-core repulsion = 18963.624785 eV Total energy + Delta-G solvation = -3450.247380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.59917 -40.98115 -39.09543 -37.00948 -36.62763 -36.09628 -34.68029 -31.63412 -31.05653 -29.34214 -28.46001 -27.48099 -25.51603 -23.80807 -23.46956 -22.50221 -20.68522 -19.12824 -19.10201 -18.66150 -17.69658 -17.45086 -17.27988 -16.85261 -16.38007 -16.20584 -15.85271 -15.23774 -15.06633 -14.78955 -14.56747 -14.30645 -14.16285 -13.92972 -13.56551 -13.44708 -13.34532 -12.99018 -12.76241 -12.52874 -12.32129 -12.15330 -12.04634 -11.86621 -11.71516 -11.48002 -10.73811 -10.61733 -9.58656 -9.36788 -8.97759 -8.20312 -6.35149 -0.14963 0.19460 1.19730 1.39184 1.42791 1.50068 1.68143 1.83683 2.13311 2.33225 2.46538 2.72390 3.09590 3.40336 3.62286 3.73370 4.06610 4.10806 4.24120 4.39177 4.46521 4.48031 4.63296 4.67899 4.75487 4.89127 5.02174 5.03923 5.14670 5.27072 5.32316 5.35810 5.50048 5.58819 5.79439 5.85415 6.07869 6.11767 6.70431 6.76873 7.04499 7.27917 7.43680 8.86453 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003839 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.317460 B = 7292.380893 C = 7908.605469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.599 5.599 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.543 3.457 13 O -0.596 6.596 14 C -0.122 4.122 15 C -0.074 4.074 16 C -0.085 4.085 17 C 0.108 3.892 18 N -0.622 5.622 19 H 0.450 0.550 20 C 0.673 3.327 21 O -0.593 6.593 22 N -0.541 5.541 23 C 0.091 3.909 24 C 0.068 3.932 25 C -0.059 4.059 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -16.140 1.509 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.332 3.668 13 O -0.478 6.478 14 C -0.127 4.127 15 C -0.094 4.094 16 C -0.106 4.106 17 C 0.004 3.996 18 N -0.267 5.267 19 H 0.295 0.705 20 C 0.374 3.626 21 O -0.473 6.473 22 N -0.264 5.264 23 C -0.050 4.050 24 C -0.033 4.033 25 C -0.081 4.081 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.203 0.797 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.854 -16.770 1.174 20.570 hybrid contribution 0.604 0.459 -0.786 1.092 sum -11.251 -16.311 0.388 19.819 Atomic orbital electron populations 1.22352 0.77696 1.04173 1.03005 1.48046 1.08613 1.05960 1.70205 1.18824 0.91393 0.80035 0.96067 1.21696 1.37002 1.06653 0.93100 0.92771 1.25816 0.94884 0.96415 1.01790 1.70032 1.38767 1.14840 1.33039 0.85511 0.78845 0.77353 0.79369 1.18460 1.20426 1.20368 1.18752 0.86713 0.84666 0.76649 1.90729 1.16329 1.88042 1.52698 1.19475 0.97636 0.92810 1.02747 1.21613 0.91522 0.98434 0.97808 1.20366 1.02355 0.89044 0.98835 1.18365 0.93568 0.87386 1.00270 1.42717 1.24796 1.12663 1.46556 0.70503 1.16053 0.80897 0.84179 0.81459 1.91032 1.78842 1.17398 1.59978 1.45153 1.22931 1.12034 1.46243 1.21994 0.84897 1.03953 0.94146 1.17833 0.96934 0.88784 0.99753 1.19851 0.99431 0.89412 0.99394 0.89455 0.91334 0.88958 0.95145 0.98094 0.92367 0.81234 0.79735 0.90129 0.88951 0.88614 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 8.88 127.77 1.13 2.97 16 2 N -0.60 -24.29 2.86 -854.84 -2.44 -26.73 16 3 C 0.26 13.52 5.18 85.63 0.44 13.96 16 4 C -0.55 -30.79 9.39 25.60 0.24 -30.55 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.58 5.46 84.66 0.46 1.04 16 7 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.54 22.34 7.33 86.72 0.64 22.97 16 13 O -0.60 -30.92 16.47 -3.97 -0.07 -30.99 16 14 C -0.12 -3.54 5.23 -20.08 -0.10 -3.64 16 15 C -0.07 -1.38 7.54 22.52 0.17 -1.21 16 16 C -0.09 -1.13 10.05 22.30 0.22 -0.91 16 17 C 0.11 1.96 7.25 38.60 0.28 2.24 16 18 N -0.62 -10.60 6.12 -317.40 -1.94 -12.55 16 19 H 0.45 4.57 8.96 -92.71 -0.83 3.74 16 20 C 0.67 16.47 8.82 179.15 1.58 18.05 16 21 O -0.59 -18.17 17.77 -4.26 -0.08 -18.25 16 22 N -0.54 -12.58 3.19 -671.99 -2.14 -14.72 16 23 C 0.09 1.65 11.01 127.77 1.41 3.06 16 24 C 0.07 1.60 6.82 38.34 0.26 1.86 16 25 C -0.06 -1.64 9.59 22.60 0.22 -1.42 16 26 H 0.09 1.66 6.91 -2.39 -0.02 1.64 16 27 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 28 H 0.09 1.96 5.80 -2.38 -0.01 1.95 16 29 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.00 0.06 7.36 -2.39 -0.02 0.04 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.17 2.42 5.32 -2.91 -0.02 2.41 16 33 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.58 8.03 -2.39 -0.02 1.56 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 3.73 8.05 -2.91 -0.02 3.70 16 Total: -1.00 -81.26 320.11 2.88 -78.38 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.29 Total: 5.25 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 6.95 Total: 28.42 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -6.24 Total: -108.87 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.14 Total: -49.24 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -81.26 2.88 -78.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160947660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.489 kcal (2) G-P(sol) polarization free energy of solvation -81.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds