Wall clock time and date at job start Tue Mar 31 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86793 * 119.99869 * 2 1 4 4 H 1.48501 * 109.47167 * 94.73310 * 3 2 1 5 5 H 1.48503 * 109.47015 * 214.73223 * 3 2 1 6 6 H 1.48495 * 109.47579 * 334.72995 * 3 2 1 7 7 C 1.40047 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00295 * 1.95714 * 7 2 1 9 9 C 1.46383 * 119.99715 * 181.96262 * 7 2 1 10 10 O 1.21681 * 119.99566 * 15.62969 * 9 7 2 11 11 N 1.34774 * 119.99601 * 195.62727 * 9 7 2 12 12 C 1.46955 * 120.59692 * 355.09031 * 11 9 7 13 13 C 1.53818 * 108.39903 * 124.75469 * 12 11 9 14 14 N 1.46967 * 108.57472 * 49.64034 * 13 12 11 15 15 C 1.34778 * 120.59238 * 124.67319 * 14 13 12 16 16 O 1.21556 * 119.99406 * 186.12502 * 15 14 13 17 17 C 1.47835 * 120.00372 * 6.11895 * 15 14 13 18 18 C 1.40023 * 120.56316 * 208.63095 * 17 15 14 19 19 C 1.38356 * 118.28832 * 179.73580 * 18 17 15 20 20 C 1.38351 * 119.30546 * 0.56241 * 19 18 17 21 21 N 1.31926 * 121.07465 * 359.69903 * 20 19 18 22 22 C 1.31693 * 121.88244 * 359.97438 * 21 20 19 23 23 C 1.46965 * 118.81050 * 304.63814 * 14 13 12 24 24 C 1.46968 * 120.58868 * 175.36652 * 11 9 7 25 25 H 0.96996 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.61168 * 244.53537 * 12 11 9 27 27 H 1.09005 * 109.61436 * 5.05133 * 12 11 9 28 28 H 1.08994 * 109.74441 * 289.84778 * 13 12 11 29 29 H 1.09007 * 109.67317 * 169.38364 * 13 12 11 30 30 H 1.07998 * 120.85160 * 0.02562 * 18 17 15 31 31 H 1.08005 * 120.34660 * 180.25891 * 19 18 17 32 32 H 1.07998 * 119.45860 * 179.72048 * 20 19 18 33 33 H 1.08005 * 119.71058 * 179.97438 * 22 21 20 34 34 H 1.09000 * 109.61385 * 295.49188 * 23 14 13 35 35 H 1.09003 * 109.60668 * 174.97459 * 23 14 13 36 36 H 1.09000 * 109.61310 * 354.95257 * 24 11 9 37 37 H 1.09002 * 109.60907 * 115.46294 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5882 1.9886 1.3953 5 1 3.4847 1.4711 -0.7977 6 1 1.3918 2.6794 -0.5976 7 6 2.0069 -1.2129 -0.0005 8 1 1.4674 -2.1479 -0.0329 9 6 3.4701 -1.2133 0.0429 10 8 4.0695 -0.2037 0.3625 11 7 4.1532 -2.3318 -0.2711 12 6 3.4434 -3.5870 -0.5544 13 6 3.8821 -4.0909 -1.9399 14 7 5.3505 -4.0786 -1.9991 15 6 6.0337 -5.1972 -2.3132 16 8 7.2476 -5.2055 -2.2509 17 6 5.3067 -6.4139 -2.7334 18 6 5.8471 -7.6838 -2.4963 19 6 5.1241 -8.7906 -2.9043 20 6 3.9077 -8.6090 -3.5379 21 7 3.4257 -7.3999 -3.7529 22 6 4.0731 -6.3162 -3.3777 23 6 6.0606 -2.8247 -1.7105 24 6 5.6216 -2.3195 -0.3305 25 1 -0.4850 0.8400 0.0004 26 1 3.6948 -4.3286 0.2039 27 1 2.3682 -3.4079 -0.5522 28 1 3.4793 -3.4376 -2.7138 29 1 3.5183 -5.1070 -2.0930 30 1 6.8014 -7.7963 -2.0034 31 1 5.5076 -9.7859 -2.7343 32 1 3.3435 -9.4712 -3.8615 33 1 3.6460 -5.3434 -3.5719 34 1 5.8128 -2.0812 -2.4681 35 1 7.1356 -3.0051 -1.7091 36 1 5.9854 -1.3030 -0.1803 37 1 6.0245 -2.9729 0.4434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169819920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:38 Heat of formation + Delta-G solvation = -7.708935 kcal Electronic energy + Delta-G solvation = -22877.219504 eV Core-core repulsion = 19427.500394 eV Total energy + Delta-G solvation = -3449.719110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05460 -39.44886 -38.25729 -36.34584 -33.57547 -32.92504 -32.78966 -32.19695 -30.64344 -27.82722 -26.49127 -24.56883 -24.32136 -23.05602 -22.14450 -20.36077 -18.94560 -17.74678 -17.34021 -16.72854 -16.50485 -16.02355 -15.72208 -15.23004 -14.83507 -14.72876 -14.46937 -14.23268 -13.85393 -13.82699 -13.38460 -13.14524 -12.62278 -12.48618 -12.26192 -12.10775 -11.82953 -11.24815 -11.19398 -11.11373 -10.83589 -10.45038 -10.25485 -10.19439 -9.64065 -9.52372 -9.35104 -9.10565 -8.84732 -7.98182 -7.57462 -6.68225 -4.92842 0.43867 0.91739 2.64864 2.85629 3.39903 3.45348 3.54562 3.71855 4.01370 4.10523 4.12662 4.32969 4.50114 4.52581 4.57376 4.71480 5.01630 5.10629 5.13729 5.28082 5.30661 5.37239 5.45730 5.66107 5.68107 5.72481 5.81716 5.88298 6.10620 6.16011 6.26079 6.29626 6.50563 6.93924 7.31029 7.48554 7.57790 7.76544 8.02461 8.19842 8.61112 9.02239 9.91356 10.32069 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.004334 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.040743 B = 6458.945873 C = 7265.795798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.101 3.899 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.255 1.255 6 H -0.322 1.322 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.552 3.448 10 O -0.611 6.611 11 N -0.633 5.633 12 C 0.108 3.892 13 C 0.067 3.933 14 N -0.598 5.598 15 C 0.562 3.438 16 O -0.542 6.542 17 C -0.182 4.182 18 C -0.021 4.021 19 C -0.181 4.181 20 C 0.117 3.883 21 N -0.486 5.486 22 C 0.123 3.877 23 C 0.099 3.901 24 C 0.106 3.894 25 H 0.283 0.717 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 -15.813 -6.633 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.117 4.117 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.180 1.180 6 H -0.254 1.254 7 C -0.568 4.568 8 H 0.109 0.891 9 C 0.362 3.638 10 O -0.503 6.503 11 N -0.368 5.368 12 C -0.017 4.017 13 C -0.057 4.057 14 N -0.330 5.330 15 C 0.350 3.650 16 O -0.420 6.420 17 C -0.187 4.187 18 C -0.047 4.047 19 C -0.201 4.201 20 C -0.039 4.039 21 N -0.194 5.194 22 C -0.035 4.035 23 C -0.023 4.023 24 C -0.019 4.019 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.906 -15.157 -6.840 18.006 hybrid contribution 0.963 0.386 0.493 1.149 sum 7.869 -14.772 -6.347 17.900 Atomic orbital electron populations 1.69534 1.07894 1.30093 1.38272 1.25763 0.94799 1.02051 0.89119 0.85324 0.78083 0.77207 0.79911 1.20600 1.17979 1.25372 1.20752 0.88002 0.95488 1.52582 0.89095 1.18401 0.88869 0.80297 0.76223 1.90257 1.70870 1.32607 1.56544 1.47699 1.04228 1.10394 1.74452 1.21988 1.00031 0.86403 0.93303 1.23131 0.79125 1.02945 1.00449 1.47975 1.07569 1.09866 1.67555 1.18090 0.86881 0.82625 0.77388 1.90760 1.13357 1.83776 1.54138 1.20997 0.97755 0.94905 1.05015 1.21692 0.98839 0.90656 0.93529 1.22153 0.96773 0.99945 1.01195 1.23037 0.92971 0.95205 0.92729 1.67810 1.34537 0.98770 1.18286 1.23629 0.89736 0.98489 0.91617 1.22144 0.97903 0.84165 0.98125 1.21613 0.83142 1.02611 0.94494 0.90717 0.92976 0.86756 0.89699 0.88059 0.83833 0.84045 0.82216 0.80683 0.90748 0.88491 0.88254 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.69 13.92 55.55 0.77 -21.92 16 2 C 0.10 2.76 5.52 -17.36 -0.10 2.66 16 3 Si 0.96 24.62 26.08 -169.99 -4.43 20.19 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 5 H -0.25 -6.83 6.25 56.52 0.35 -6.47 16 6 H -0.32 -7.88 7.11 56.52 0.40 -7.47 16 7 C -0.53 -14.17 9.35 -35.63 -0.33 -14.50 16 8 H 0.09 2.37 6.01 -52.49 -0.32 2.05 16 9 C 0.55 13.94 7.34 -12.98 -0.10 13.84 16 10 O -0.61 -16.96 11.44 5.21 0.06 -16.90 16 11 N -0.63 -12.81 2.94 -173.87 -0.51 -13.33 16 12 C 0.11 1.77 6.54 -3.37 -0.02 1.75 16 13 C 0.07 0.89 4.92 -3.36 -0.02 0.88 16 14 N -0.60 -8.58 2.95 -173.32 -0.51 -9.10 16 15 C 0.56 8.16 7.47 -12.33 -0.09 8.06 16 16 O -0.54 -9.29 16.16 5.32 0.09 -9.20 16 17 C -0.18 -2.19 5.50 -104.82 -0.58 -2.76 16 18 C -0.02 -0.21 9.73 -38.87 -0.38 -0.59 16 19 C -0.18 -1.43 10.10 -39.50 -0.40 -1.83 16 20 C 0.12 1.01 11.17 -17.47 -0.20 0.81 16 21 N -0.49 -5.43 10.35 -12.91 -0.13 -5.56 16 22 C 0.12 1.38 8.60 -17.13 -0.15 1.24 16 23 C 0.10 1.51 6.60 -3.59 -0.02 1.49 16 24 C 0.11 1.86 6.58 -3.59 -0.02 1.84 16 25 H 0.28 7.17 8.29 -40.82 -0.34 6.83 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.11 2.01 5.34 -51.93 -0.28 1.73 16 28 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 29 H 0.10 1.15 3.96 -51.92 -0.21 0.95 16 30 H 0.14 1.36 7.97 -52.49 -0.42 0.94 16 31 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.18 1.82 5.38 -52.48 -0.28 1.54 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.42 6.99 -51.93 -0.36 1.06 16 36 H 0.10 1.88 7.01 -51.93 -0.36 1.52 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -33.24 303.28 -6.44 -39.68 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -3.94 Total: -1.33 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -2.40 Total: 12.89 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.38 Total: -49.90 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.15 Total: -26.11 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.43 Total: 20.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.24 -6.44 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169819920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.968 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds