Wall clock time and date at job start Tue Mar 31 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86793 * 119.99869 * 2 1 4 4 H 1.48501 * 109.47167 * 94.73310 * 3 2 1 5 5 H 1.48503 * 109.47015 * 214.73223 * 3 2 1 6 6 H 1.48495 * 109.47579 * 334.72995 * 3 2 1 7 7 C 1.40047 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00295 * 1.95714 * 7 2 1 9 9 C 1.46383 * 119.99715 * 181.96262 * 7 2 1 10 10 O 1.21681 * 119.99566 * 15.62969 * 9 7 2 11 11 N 1.34774 * 119.99601 * 195.62727 * 9 7 2 12 12 C 1.46955 * 120.59692 * 355.09031 * 11 9 7 13 13 C 1.53818 * 108.39903 * 124.75469 * 12 11 9 14 14 N 1.46967 * 108.57472 * 49.64034 * 13 12 11 15 15 C 1.34778 * 120.59238 * 124.67319 * 14 13 12 16 16 O 1.21556 * 119.99406 * 186.12502 * 15 14 13 17 17 C 1.47835 * 120.00372 * 6.11895 * 15 14 13 18 18 C 1.40023 * 120.56316 * 208.63095 * 17 15 14 19 19 C 1.38356 * 118.28832 * 179.73580 * 18 17 15 20 20 C 1.38351 * 119.30546 * 0.56241 * 19 18 17 21 21 N 1.31926 * 121.07465 * 359.69903 * 20 19 18 22 22 C 1.31693 * 121.88244 * 359.97438 * 21 20 19 23 23 C 1.46965 * 118.81050 * 304.63814 * 14 13 12 24 24 C 1.46968 * 120.58868 * 175.36652 * 11 9 7 25 25 H 0.96996 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.61168 * 244.53537 * 12 11 9 27 27 H 1.09005 * 109.61436 * 5.05133 * 12 11 9 28 28 H 1.08994 * 109.74441 * 289.84778 * 13 12 11 29 29 H 1.09007 * 109.67317 * 169.38364 * 13 12 11 30 30 H 1.07998 * 120.85160 * 0.02562 * 18 17 15 31 31 H 1.08005 * 120.34660 * 180.25891 * 19 18 17 32 32 H 1.07998 * 119.45860 * 179.72048 * 20 19 18 33 33 H 1.08005 * 119.71058 * 179.97438 * 22 21 20 34 34 H 1.09000 * 109.61385 * 295.49188 * 23 14 13 35 35 H 1.09003 * 109.60668 * 174.97459 * 23 14 13 36 36 H 1.09000 * 109.61310 * 354.95257 * 24 11 9 37 37 H 1.09002 * 109.60907 * 115.46294 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5882 1.9886 1.3953 5 1 3.4847 1.4711 -0.7977 6 1 1.3918 2.6794 -0.5976 7 6 2.0069 -1.2129 -0.0005 8 1 1.4674 -2.1479 -0.0329 9 6 3.4701 -1.2133 0.0429 10 8 4.0695 -0.2037 0.3625 11 7 4.1532 -2.3318 -0.2711 12 6 3.4434 -3.5870 -0.5544 13 6 3.8821 -4.0909 -1.9399 14 7 5.3505 -4.0786 -1.9991 15 6 6.0337 -5.1972 -2.3132 16 8 7.2476 -5.2055 -2.2509 17 6 5.3067 -6.4139 -2.7334 18 6 5.8471 -7.6838 -2.4963 19 6 5.1241 -8.7906 -2.9043 20 6 3.9077 -8.6090 -3.5379 21 7 3.4257 -7.3999 -3.7529 22 6 4.0731 -6.3162 -3.3777 23 6 6.0606 -2.8247 -1.7105 24 6 5.6216 -2.3195 -0.3305 25 1 -0.4850 0.8400 0.0004 26 1 3.6948 -4.3286 0.2039 27 1 2.3682 -3.4079 -0.5522 28 1 3.4793 -3.4376 -2.7138 29 1 3.5183 -5.1070 -2.0930 30 1 6.8014 -7.7963 -2.0034 31 1 5.5076 -9.7859 -2.7343 32 1 3.3435 -9.4712 -3.8615 33 1 3.6460 -5.3434 -3.5719 34 1 5.8128 -2.0812 -2.4681 35 1 7.1356 -3.0051 -1.7091 36 1 5.9854 -1.3030 -0.1803 37 1 6.0245 -2.9729 0.4434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169819920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:37 Heat of formation + Delta-G solvation = -31.154491 kcal Electronic energy + Delta-G solvation = -22878.236179 eV Core-core repulsion = 19427.500394 eV Total energy + Delta-G solvation = -3450.735786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.03979 -40.61878 -39.77510 -37.87637 -35.08420 -34.94307 -33.63455 -33.25462 -31.73849 -29.43768 -28.15810 -25.63328 -25.33664 -24.12723 -23.46912 -21.75563 -20.37185 -19.08558 -18.46151 -18.04481 -17.71191 -17.56158 -16.97878 -16.67469 -16.21277 -16.09677 -15.78439 -15.52673 -14.91652 -14.81636 -14.60551 -14.43985 -14.16944 -14.01621 -13.99776 -13.38288 -13.17487 -12.97274 -12.69458 -12.45020 -12.43581 -12.29608 -11.49712 -11.29450 -11.20892 -10.97987 -10.47795 -10.20852 -10.14033 -9.97758 -9.19175 -8.77259 -7.00337 -0.36241 0.18213 1.33018 1.39832 1.58873 1.64973 1.74560 2.08946 2.34380 2.61522 2.77570 3.18791 3.29867 3.47667 3.74738 3.83504 3.86382 3.92823 4.01918 4.11203 4.20026 4.34004 4.40588 4.48865 4.60559 4.65492 4.68875 4.80310 4.94770 4.98414 5.07571 5.09303 5.31209 5.58587 5.66626 5.90583 6.15528 6.22912 6.61612 6.82289 6.91451 7.08826 7.94137 8.27260 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.004334 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.040743 B = 6458.945873 C = 7265.795798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.072 3.928 3 Si 1.003 2.997 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.304 1.304 7 C -0.546 4.546 8 H 0.092 0.908 9 C 0.550 3.450 10 O -0.641 6.641 11 N -0.632 5.632 12 C 0.104 3.896 13 C 0.078 3.922 14 N -0.599 5.599 15 C 0.565 3.435 16 O -0.572 6.572 17 C -0.200 4.200 18 C -0.029 4.029 19 C -0.165 4.165 20 C 0.119 3.881 21 N -0.507 5.507 22 C 0.117 3.883 23 C 0.109 3.891 24 C 0.108 3.892 25 H 0.291 0.709 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.178 0.822 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -18.295 -7.491 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.144 4.144 3 Si 0.836 3.164 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.234 1.234 7 C -0.583 4.583 8 H 0.109 0.891 9 C 0.358 3.642 10 O -0.535 6.535 11 N -0.365 5.365 12 C -0.020 4.020 13 C -0.044 4.044 14 N -0.330 5.330 15 C 0.355 3.645 16 O -0.453 6.453 17 C -0.205 4.205 18 C -0.056 4.056 19 C -0.185 4.185 20 C -0.038 4.038 21 N -0.216 5.216 22 C -0.040 4.040 23 C -0.015 4.015 24 C -0.016 4.016 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.165 0.835 31 H 0.196 0.804 32 H 0.211 0.789 33 H 0.195 0.805 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.016 -17.674 -7.718 20.522 hybrid contribution 0.971 0.972 0.756 1.568 sum 7.987 -16.701 -6.962 19.779 Atomic orbital electron populations 1.69535 1.08164 1.31001 1.39235 1.26178 0.95270 1.03546 0.89416 0.84736 0.76732 0.76357 0.78558 1.22098 1.20286 1.23398 1.20974 0.88989 0.95528 1.52761 0.89060 1.18341 0.88736 0.81163 0.75968 1.90231 1.71379 1.34184 1.57699 1.47633 1.05491 1.10344 1.73027 1.22164 0.99165 0.84980 0.95682 1.23106 0.78599 1.04411 0.98322 1.47990 1.07824 1.09653 1.67577 1.18456 0.86578 0.83039 0.76422 1.90739 1.14727 1.84294 1.55539 1.20851 0.98342 0.94436 1.06870 1.21910 0.99281 0.90696 0.93668 1.22524 0.95875 1.00832 0.99240 1.23684 0.93328 0.95274 0.91478 1.67854 1.35092 0.99613 1.19001 1.23602 0.89549 0.98974 0.91865 1.21962 0.98361 0.84693 0.96441 1.21699 0.81361 1.02132 0.96451 0.89862 0.91555 0.87863 0.89422 0.85461 0.83520 0.80383 0.78878 0.80503 0.90766 0.87778 0.89905 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.34 13.92 21.84 0.30 -46.03 16 2 C 0.07 3.94 5.52 85.30 0.47 4.41 16 3 Si 1.00 51.09 26.08 68.60 1.79 52.88 16 4 H -0.29 -15.48 7.11 99.48 0.71 -14.78 16 5 H -0.28 -14.95 6.25 99.48 0.62 -14.33 16 6 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.55 -29.25 9.35 24.83 0.23 -29.02 16 8 H 0.09 4.78 6.01 -2.91 -0.02 4.76 16 9 C 0.55 27.95 7.34 86.36 0.63 28.59 16 10 O -0.64 -36.05 11.44 -4.29 -0.05 -36.10 16 11 N -0.63 -25.41 2.94 -822.22 -2.42 -27.83 16 12 C 0.10 3.32 6.54 86.57 0.57 3.89 16 13 C 0.08 1.99 4.92 86.57 0.43 2.42 16 14 N -0.60 -16.50 2.95 -820.54 -2.42 -18.92 16 15 C 0.57 15.71 7.47 86.78 0.65 16.36 16 16 O -0.57 -19.15 16.16 -3.89 -0.06 -19.22 16 17 C -0.20 -4.45 5.50 -20.00 -0.11 -4.56 16 18 C -0.03 -0.52 9.73 22.73 0.22 -0.30 16 19 C -0.17 -1.96 10.10 22.32 0.23 -1.73 16 20 C 0.12 1.58 11.17 84.71 0.95 2.53 16 21 N -0.51 -9.97 10.35 -194.76 -2.01 -11.98 16 22 C 0.12 2.41 8.60 85.02 0.73 3.14 16 23 C 0.11 3.23 6.60 86.42 0.57 3.80 16 24 C 0.11 3.75 6.58 86.42 0.57 4.32 16 25 H 0.29 14.63 8.29 -92.71 -0.77 13.86 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.10 3.58 5.34 -2.38 -0.01 3.57 16 28 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 29 H 0.13 2.65 3.96 -2.38 -0.01 2.64 16 30 H 0.15 2.48 7.97 -2.91 -0.02 2.46 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.18 3.39 5.38 -2.91 -0.02 3.38 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 2.98 6.99 -2.39 -0.02 2.97 16 36 H 0.08 3.18 7.01 -2.39 -0.02 3.17 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.27 303.28 2.29 -68.97 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.03 Total: 4.38 kcal Atomic # 6 Polarization: 27.72 SS G_CDS: 6.13 Total: 33.85 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -6.55 Total: -104.77 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.11 Total: -55.32 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.79 Total: 52.88 kcal Total: -71.27 2.29 -68.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169819920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.819 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds