Wall clock time and date at job start Tue Mar 31 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86795 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46948 * 90.00328 * 3 2 1 5 5 H 1.48500 * 109.47229 * 210.00169 * 3 2 1 6 6 H 1.48501 * 109.47200 * 330.00122 * 3 2 1 7 7 C 1.40048 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00280 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99825 * 354.95460 * 9 7 2 11 11 N 1.34771 * 120.00059 * 174.95228 * 9 7 2 12 12 C 1.46961 * 120.59566 * 4.89684 * 11 9 7 13 13 C 1.53814 * 108.39798 * 124.76031 * 12 11 9 14 14 N 1.46961 * 108.58160 * 49.63713 * 13 12 11 15 15 C 1.34778 * 120.59624 * 124.62605 * 14 13 12 16 16 O 1.21509 * 120.00111 * 185.56001 * 15 14 13 17 17 C 1.48150 * 119.99708 * 5.55616 * 15 14 13 18 18 C 1.39816 * 120.92256 * 212.56529 * 17 15 14 19 19 C 1.38151 * 119.00023 * 179.75764 * 18 17 15 20 20 N 1.31815 * 120.89862 * 0.53147 * 19 18 17 21 21 C 1.31814 * 122.04357 * 359.74805 * 20 19 18 22 22 C 1.38148 * 120.89928 * 359.96771 * 21 20 19 23 23 C 1.46965 * 118.81181 * 304.64999 * 14 13 12 24 24 C 1.46974 * 120.59452 * 185.18127 * 11 9 7 25 25 H 0.96996 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.61214 * 244.54232 * 12 11 9 27 27 H 1.08994 * 109.60805 * 5.05046 * 12 11 9 28 28 H 1.09003 * 109.73748 * 289.84797 * 13 12 11 29 29 H 1.09001 * 109.67280 * 169.38688 * 13 12 11 30 30 H 1.08001 * 120.50216 * 0.02562 * 18 17 15 31 31 H 1.08000 * 119.55245 * 180.27359 * 19 18 17 32 32 H 1.08005 * 119.55019 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.49980 * 180.02562 * 22 21 20 34 34 H 1.09004 * 109.60779 * 295.48116 * 23 14 13 35 35 H 1.09006 * 109.60962 * 174.96919 * 23 14 13 36 36 H 1.09004 * 109.60775 * 354.94083 * 24 11 9 37 37 H 1.08997 * 109.61365 * 115.45460 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0463 1.4001 5 1 3.5383 1.4401 -0.7001 6 1 1.4382 2.6527 -0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0618 -2.4826 0.0926 11 7 1.9450 -3.6454 -0.1038 12 6 3.4144 -3.6653 -0.1092 13 6 3.8914 -4.6048 1.0113 14 7 3.1655 -5.8774 0.8961 15 6 3.8353 -7.0423 0.7919 16 8 3.2286 -8.0767 0.5959 17 6 5.3115 -7.0616 0.9165 18 6 6.0809 -7.9836 0.2005 19 6 7.4550 -7.9630 0.3427 20 7 8.0393 -7.0975 1.1470 21 6 7.3511 -6.2155 1.8441 22 6 5.9733 -6.1621 1.7578 23 6 1.6960 -5.8571 0.8958 24 6 1.2190 -4.9181 -0.2191 25 1 -0.4850 0.8400 0.0004 26 1 3.7719 -4.0294 -1.0725 27 1 3.7945 -2.6592 0.0682 28 1 3.6867 -4.1535 1.9822 29 1 4.9618 -4.7837 0.9094 30 1 5.6086 -8.6983 -0.4572 31 1 8.0583 -8.6683 -0.2096 32 1 7.8714 -5.5251 2.4915 33 1 5.4159 -5.4365 2.3316 34 1 1.3350 -5.4950 1.8585 35 1 1.3162 -6.8626 0.7146 36 1 0.1488 -4.7396 -0.1141 37 1 1.4236 -5.3693 -1.1900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169820168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:01 Heat of formation + Delta-G solvation = -4.433782 kcal Electronic energy + Delta-G solvation = -22770.795643 eV Core-core repulsion = 19321.218555 eV Total energy + Delta-G solvation = -3449.577089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97405 -39.41271 -37.97875 -36.01371 -33.60491 -32.72289 -32.54741 -31.63372 -30.75239 -27.66125 -26.31602 -24.61439 -24.09414 -23.02985 -22.05051 -20.37292 -18.98341 -17.78875 -16.86656 -16.42254 -16.25504 -15.85735 -15.60006 -15.15223 -15.07767 -14.61297 -14.30194 -14.17400 -13.95656 -13.82267 -13.61734 -13.05763 -12.66852 -12.15692 -11.84893 -11.69247 -11.52239 -11.23743 -11.11835 -11.04782 -10.83084 -10.37108 -10.32632 -10.15595 -10.03990 -9.59022 -9.36489 -8.99703 -8.79222 -7.72691 -7.34812 -6.31304 -4.77732 0.56506 0.81727 2.66621 2.88937 3.06148 3.13716 3.16291 3.57261 3.97862 4.15110 4.19488 4.38287 4.44209 4.54955 4.68688 4.79635 5.10134 5.19882 5.26911 5.37999 5.47730 5.48444 5.49828 5.55863 5.77439 5.83271 5.85997 5.94227 6.19053 6.26221 6.32617 6.42930 6.58430 7.32421 7.34559 7.41242 7.64084 7.96804 8.02391 8.18977 8.90142 9.26714 10.44193 10.62730 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.004299 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.363067 B = 6511.766233 C = 7572.457125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.070 3.930 14 N -0.593 5.593 15 C 0.555 3.445 16 O -0.538 6.538 17 C -0.078 4.078 18 C -0.121 4.121 19 C 0.095 3.905 20 N -0.474 5.474 21 C 0.095 3.905 22 C -0.149 4.149 23 C 0.099 3.901 24 C 0.107 3.893 25 H 0.270 0.730 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.574 -9.932 2.391 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.457 6.457 11 N -0.382 5.382 12 C -0.016 4.016 13 C -0.053 4.053 14 N -0.325 5.325 15 C 0.342 3.658 16 O -0.416 6.416 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.062 4.062 20 N -0.183 5.183 21 C -0.061 4.061 22 C -0.169 4.169 23 C -0.024 4.024 24 C -0.018 4.018 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.238 -10.346 2.409 16.973 hybrid contribution -0.396 0.860 -0.085 0.951 sum 12.842 -9.486 2.324 16.134 Atomic orbital electron populations 1.70002 1.07113 1.27515 1.34768 1.25728 0.94629 1.00363 0.92515 0.86377 0.80175 0.81370 0.78920 1.19644 1.18827 1.20394 1.20938 0.93496 0.89157 1.54568 0.90882 1.18302 0.86967 0.82102 0.76160 1.90602 1.14337 1.85865 1.54862 1.48216 1.04353 1.05906 1.79729 1.21901 0.83392 1.00447 0.95866 1.23034 0.97015 0.83978 1.01318 1.47987 1.07691 1.06040 1.70801 1.18258 0.86486 0.83736 0.77277 1.90762 1.69164 1.32254 1.49413 1.20386 0.93986 0.96548 0.98013 1.22274 0.94912 0.97865 0.99078 1.22784 0.91907 0.96208 0.95260 1.67562 1.41467 1.03670 1.05602 1.22804 0.90830 0.95918 0.96567 1.22695 0.96492 0.98555 0.99120 1.22178 0.77985 1.01628 1.00594 1.21515 0.99355 0.85069 0.95832 0.91934 0.93410 0.87422 0.90257 0.88396 0.83808 0.82084 0.81964 0.83106 0.90845 0.88748 0.88356 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.05 11.84 55.55 0.66 -21.39 16 2 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 3 Si 0.91 19.01 29.56 -169.99 -5.02 13.99 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -14.32 8.87 -35.63 -0.32 -14.64 16 8 H 0.07 1.71 5.66 -52.49 -0.30 1.41 16 9 C 0.56 15.02 7.62 -12.99 -0.10 14.92 16 10 O -0.57 -17.80 14.45 5.20 0.08 -17.73 16 11 N -0.64 -13.68 2.94 -173.87 -0.51 -14.20 16 12 C 0.11 1.83 6.51 -3.37 -0.02 1.81 16 13 C 0.07 0.93 5.01 -3.37 -0.02 0.91 16 14 N -0.59 -8.78 2.95 -173.21 -0.51 -9.29 16 15 C 0.55 8.24 7.46 -12.19 -0.09 8.15 16 16 O -0.54 -9.51 16.26 5.36 0.09 -9.42 16 17 C -0.08 -0.94 5.40 -104.65 -0.57 -1.50 16 18 C -0.12 -1.29 9.71 -39.02 -0.38 -1.66 16 19 C 0.10 0.90 11.17 -17.59 -0.20 0.70 16 20 N -0.47 -5.01 10.34 -13.30 -0.14 -5.14 16 21 C 0.10 0.88 11.17 -17.59 -0.20 0.68 16 22 C -0.15 -1.46 7.48 -39.02 -0.29 -1.76 16 23 C 0.10 1.59 6.60 -3.60 -0.02 1.57 16 24 C 0.11 2.03 6.60 -3.59 -0.02 2.00 16 25 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.11 1.82 5.34 -51.93 -0.28 1.55 16 28 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 29 H 0.10 1.05 4.16 -51.93 -0.22 0.83 16 30 H 0.14 1.42 8.03 -52.49 -0.42 1.00 16 31 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.15 1.29 5.88 -52.48 -0.31 0.98 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 36 H 0.10 2.05 6.99 -51.93 -0.36 1.69 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -34.94 308.74 -6.94 -41.88 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.91 Total: 3.23 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -2.32 Total: 13.42 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.50 Total: -50.02 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.16 Total: -27.15 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.94 -6.94 -41.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169820168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.450 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds