Wall clock time and date at job start Tue Mar 31 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47314 * 90.00569 * 3 2 1 5 5 H 1.48506 * 109.46840 * 210.00358 * 3 2 1 6 6 H 1.48497 * 109.47141 * 330.00046 * 3 2 1 7 7 C 1.40044 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00905 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99679 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00110 * 354.78229 * 9 7 2 11 11 N 1.34776 * 119.99873 * 174.77438 * 9 7 2 12 12 C 1.46966 * 120.59368 * 6.71166 * 11 9 7 13 13 C 1.53810 * 108.39827 * 124.75889 * 12 11 9 14 14 N 1.46964 * 108.58225 * 49.63544 * 13 12 11 15 15 C 1.34778 * 120.59339 * 124.67388 * 14 13 12 16 16 O 1.21509 * 119.99966 * 6.53716 * 15 14 13 17 17 C 1.48168 * 119.99683 * 186.54600 * 15 14 13 18 18 C 1.39305 * 119.72443 * 154.03790 * 17 15 14 19 19 C 1.38587 * 119.06457 * 179.97438 * 18 17 15 20 20 C 1.38633 * 118.48597 * 0.02562 * 19 18 17 21 21 C 1.38564 * 119.34843 * 0.02562 * 20 19 18 22 22 N 1.31520 * 120.90399 * 359.74034 * 21 20 19 23 23 C 1.46964 * 118.81056 * 304.64535 * 14 13 12 24 24 C 1.46964 * 120.59428 * 186.98803 * 11 9 7 25 25 H 0.96992 * 119.99945 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.60790 * 244.53807 * 12 11 9 27 27 H 1.08996 * 109.61000 * 5.04763 * 12 11 9 28 28 H 1.09001 * 109.73732 * 289.84497 * 13 12 11 29 29 H 1.09001 * 109.53265 * 169.30577 * 13 12 11 30 30 H 1.08009 * 120.46826 * 0.02562 * 18 17 15 31 31 H 1.07996 * 120.75774 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.32576 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.54365 * 180.02562 * 21 20 19 34 34 H 1.08997 * 109.60936 * 295.48572 * 23 14 13 35 35 H 1.09000 * 109.74911 * 175.05602 * 23 14 13 36 36 H 1.09007 * 109.60864 * 354.95039 * 24 11 9 37 37 H 1.09001 * 109.61182 * 115.46209 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0465 1.4001 5 1 3.5382 1.4402 -0.7002 6 1 1.4381 2.6527 -0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0622 -2.4827 0.0958 11 7 1.9449 -3.6452 -0.1074 12 6 3.4140 -3.6688 -0.0769 13 6 3.8611 -4.6287 1.0386 14 7 3.1355 -5.8973 0.8835 15 6 3.8052 -7.0620 0.7768 16 8 5.0107 -7.0856 0.9269 17 6 3.0714 -8.3136 0.4761 18 6 3.7307 -9.3663 -0.1545 19 6 3.0313 -10.5309 -0.4288 20 6 1.6959 -10.6020 -0.0631 21 6 1.1038 -9.5154 0.5604 22 7 1.7924 -8.4237 0.8129 23 6 1.6665 -5.8731 0.8475 24 6 1.2192 -4.9137 -0.2625 25 1 -0.4850 0.8400 0.0004 26 1 3.7943 -4.0172 -1.0373 27 1 3.7918 -2.6669 0.1272 28 1 3.6336 -4.1937 2.0118 29 1 4.9332 -4.8081 0.9570 30 1 4.7724 -9.2765 -0.4252 31 1 3.5154 -11.3641 -0.9163 32 1 1.1228 -11.4954 -0.2622 33 1 0.0638 -9.5674 0.8471 34 1 1.2827 -5.5266 1.8071 35 1 1.2866 -6.8737 0.6413 36 1 0.1471 -4.7343 -0.1809 37 1 1.4468 -5.3488 -1.2356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169820184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:17 Heat of formation + Delta-G solvation = -0.411347 kcal Electronic energy + Delta-G solvation = -22770.853279 eV Core-core repulsion = 19321.450617 eV Total energy + Delta-G solvation = -3449.402663 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92876 -39.21208 -37.83660 -35.82715 -33.44622 -32.70044 -32.39265 -31.65521 -30.66208 -27.55461 -26.00758 -24.62484 -23.89405 -22.98553 -21.91469 -20.28613 -18.94900 -17.44367 -17.09921 -16.35405 -16.24835 -15.73025 -15.52164 -15.10405 -14.86680 -14.48077 -14.20253 -14.08527 -13.82216 -13.69791 -13.47482 -12.79784 -12.50576 -12.26094 -11.82241 -11.62927 -11.42979 -11.15486 -10.97763 -10.84955 -10.69866 -10.28969 -10.27244 -10.15058 -10.07124 -9.45636 -9.09496 -8.88849 -8.57111 -7.61770 -7.18065 -6.22653 -4.67945 0.48379 0.91755 2.68261 3.04302 3.12732 3.19933 3.22776 3.59531 3.95526 4.09316 4.48502 4.52155 4.52819 4.59871 4.71341 4.78740 5.04555 5.42451 5.45583 5.48135 5.61029 5.68680 5.72281 5.80418 5.88882 6.01936 6.06172 6.17131 6.35299 6.41573 6.53533 6.64753 6.82662 7.42332 7.43248 7.55570 7.60454 8.09241 8.20474 8.31115 8.99210 9.38525 10.53882 10.72340 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003854 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.464392 B = 7264.145132 C = 7904.315094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.644 5.644 12 C 0.111 3.889 13 C 0.093 3.907 14 N -0.580 5.580 15 C 0.566 3.434 16 O -0.545 6.545 17 C 0.090 3.910 18 C -0.116 4.116 19 C -0.080 4.080 20 C -0.155 4.155 21 C 0.094 3.906 22 N -0.448 5.448 23 C 0.055 3.945 24 C 0.106 3.894 25 H 0.269 0.731 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.165 0.835 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -18.655 -0.704 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.459 6.459 11 N -0.383 5.383 12 C -0.014 4.014 13 C -0.031 4.031 14 N -0.310 5.310 15 C 0.352 3.648 16 O -0.423 6.423 17 C -0.047 4.047 18 C -0.136 4.136 19 C -0.105 4.105 20 C -0.175 4.175 21 C -0.064 4.064 22 N -0.160 5.160 23 C -0.068 4.068 24 C -0.018 4.018 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.112 0.888 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.377 -17.793 -0.153 18.324 hybrid contribution 0.806 0.110 -0.435 0.922 sum 5.183 -17.684 -0.589 18.437 Atomic orbital electron populations 1.70009 1.07083 1.27362 1.35148 1.25725 0.94620 1.00320 0.92531 0.86384 0.80187 0.81399 0.78897 1.19678 1.18836 1.20456 1.20971 0.93573 0.89244 1.54350 0.90892 1.18276 0.86930 0.82165 0.76080 1.90587 1.14408 1.86006 1.54898 1.48203 1.04518 1.06223 1.79354 1.21885 0.83187 1.00239 0.96077 1.22327 0.97287 0.83100 1.00342 1.47969 1.08379 1.05869 1.68779 1.17913 0.86339 0.82855 0.77719 1.90754 1.13616 1.85913 1.52027 1.21273 0.90498 0.95134 0.97843 1.22076 1.01763 0.92586 0.97208 1.21632 0.94313 0.97531 0.97070 1.22347 0.95866 1.00373 0.98901 1.23018 1.00530 0.88225 0.94675 1.67514 1.06527 1.24088 1.17823 1.23477 0.78064 1.05003 1.00278 1.21559 0.99247 0.85235 0.95803 0.92052 0.93543 0.87634 0.90817 0.88929 0.83608 0.84091 0.84235 0.81765 0.91345 0.83754 0.88751 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.77 11.84 55.55 0.66 -22.11 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -15.08 8.86 -35.63 -0.32 -15.40 16 8 H 0.07 1.83 5.69 -52.49 -0.30 1.53 16 9 C 0.56 15.80 7.61 -12.98 -0.10 15.71 16 10 O -0.58 -18.46 14.46 5.20 0.08 -18.38 16 11 N -0.64 -14.75 2.94 -173.87 -0.51 -15.26 16 12 C 0.11 2.13 6.50 -3.37 -0.02 2.11 16 13 C 0.09 1.59 6.59 -3.37 -0.02 1.57 16 14 N -0.58 -9.89 2.95 -173.21 -0.51 -10.40 16 15 C 0.57 9.34 7.57 -12.18 -0.09 9.24 16 16 O -0.54 -10.01 16.05 5.36 0.09 -9.92 16 17 C 0.09 1.22 6.47 -83.01 -0.54 0.69 16 18 C -0.12 -1.25 9.63 -39.06 -0.38 -1.62 16 19 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 20 C -0.15 -1.09 10.12 -39.32 -0.40 -1.49 16 21 C 0.09 0.84 11.18 -17.56 -0.20 0.64 16 22 N -0.45 -5.59 6.39 -9.80 -0.06 -5.65 16 23 C 0.05 0.93 6.30 -3.59 -0.02 0.91 16 24 C 0.11 2.12 6.60 -3.59 -0.02 2.09 16 25 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 26 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.11 2.04 5.37 -51.93 -0.28 1.76 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.49 7.03 -51.93 -0.37 1.13 16 30 H 0.15 1.48 7.86 -52.48 -0.41 1.07 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.15 2.19 3.77 -84.86 -0.32 1.87 16 36 H 0.09 2.05 6.99 -51.92 -0.36 1.69 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -36.02 310.34 -7.34 -43.36 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.13 Total: 3.08 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -2.60 Total: 15.75 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.43 Total: -53.42 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: 0.16 Total: -28.30 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.02 -7.34 -43.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169820184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds