Wall clock time and date at job start Tue Mar 31 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47314 * 90.00569 * 3 2 1 5 5 H 1.48506 * 109.46840 * 210.00358 * 3 2 1 6 6 H 1.48497 * 109.47141 * 330.00046 * 3 2 1 7 7 C 1.40044 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00905 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99679 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00110 * 354.78229 * 9 7 2 11 11 N 1.34776 * 119.99873 * 174.77438 * 9 7 2 12 12 C 1.46966 * 120.59368 * 6.71166 * 11 9 7 13 13 C 1.53810 * 108.39827 * 124.75889 * 12 11 9 14 14 N 1.46964 * 108.58225 * 49.63544 * 13 12 11 15 15 C 1.34778 * 120.59339 * 124.67388 * 14 13 12 16 16 O 1.21509 * 119.99966 * 6.53716 * 15 14 13 17 17 C 1.48168 * 119.99683 * 186.54600 * 15 14 13 18 18 C 1.39305 * 119.72443 * 154.03790 * 17 15 14 19 19 C 1.38587 * 119.06457 * 179.97438 * 18 17 15 20 20 C 1.38633 * 118.48597 * 0.02562 * 19 18 17 21 21 C 1.38564 * 119.34843 * 0.02562 * 20 19 18 22 22 N 1.31520 * 120.90399 * 359.74034 * 21 20 19 23 23 C 1.46964 * 118.81056 * 304.64535 * 14 13 12 24 24 C 1.46964 * 120.59428 * 186.98803 * 11 9 7 25 25 H 0.96992 * 119.99945 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.60790 * 244.53807 * 12 11 9 27 27 H 1.08996 * 109.61000 * 5.04763 * 12 11 9 28 28 H 1.09001 * 109.73732 * 289.84497 * 13 12 11 29 29 H 1.09001 * 109.53265 * 169.30577 * 13 12 11 30 30 H 1.08009 * 120.46826 * 0.02562 * 18 17 15 31 31 H 1.07996 * 120.75774 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.32576 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.54365 * 180.02562 * 21 20 19 34 34 H 1.08997 * 109.60936 * 295.48572 * 23 14 13 35 35 H 1.09000 * 109.74911 * 175.05602 * 23 14 13 36 36 H 1.09007 * 109.60864 * 354.95039 * 24 11 9 37 37 H 1.09001 * 109.61182 * 115.46209 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0465 1.4001 5 1 3.5382 1.4402 -0.7002 6 1 1.4381 2.6527 -0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0622 -2.4827 0.0958 11 7 1.9449 -3.6452 -0.1074 12 6 3.4140 -3.6688 -0.0769 13 6 3.8611 -4.6287 1.0386 14 7 3.1355 -5.8973 0.8835 15 6 3.8052 -7.0620 0.7768 16 8 5.0107 -7.0856 0.9269 17 6 3.0714 -8.3136 0.4761 18 6 3.7307 -9.3663 -0.1545 19 6 3.0313 -10.5309 -0.4288 20 6 1.6959 -10.6020 -0.0631 21 6 1.1038 -9.5154 0.5604 22 7 1.7924 -8.4237 0.8129 23 6 1.6665 -5.8731 0.8475 24 6 1.2192 -4.9137 -0.2625 25 1 -0.4850 0.8400 0.0004 26 1 3.7943 -4.0172 -1.0373 27 1 3.7918 -2.6669 0.1272 28 1 3.6336 -4.1937 2.0118 29 1 4.9332 -4.8081 0.9570 30 1 4.7724 -9.2765 -0.4252 31 1 3.5154 -11.3641 -0.9163 32 1 1.1228 -11.4954 -0.2622 33 1 0.0638 -9.5674 0.8471 34 1 1.2827 -5.5266 1.8071 35 1 1.2866 -6.8737 0.6413 36 1 0.1471 -4.7343 -0.1809 37 1 1.4468 -5.3488 -1.2356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169820184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:17 Heat of formation + Delta-G solvation = -25.927637 kcal Electronic energy + Delta-G solvation = -22771.959749 eV Core-core repulsion = 19321.450617 eV Total energy + Delta-G solvation = -3450.509132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94342 -40.44962 -39.51974 -37.57573 -34.93252 -34.63331 -33.56289 -32.63826 -32.04620 -29.27295 -27.84835 -25.73028 -24.88581 -24.24518 -23.36105 -21.80621 -20.49592 -18.88150 -18.19012 -17.94807 -17.52896 -17.08342 -16.77257 -16.41939 -16.26645 -15.91767 -15.80892 -15.66030 -14.89774 -14.83174 -14.63978 -14.28227 -14.09078 -13.60710 -13.32911 -13.20383 -12.97853 -12.74240 -12.69208 -12.35173 -12.28805 -12.04753 -11.99534 -11.43631 -10.94428 -10.93005 -10.33344 -10.15485 -9.97284 -9.77901 -9.00632 -8.30190 -6.85433 -0.32954 0.23791 1.40616 1.41567 1.56702 1.57569 1.79541 2.23909 2.44411 2.74529 2.78823 3.07621 3.56325 3.61565 3.96878 3.97425 3.99301 4.05990 4.10893 4.20024 4.35407 4.39368 4.46989 4.60828 4.70013 4.77010 4.84373 4.96923 5.07429 5.14597 5.17792 5.34630 5.41273 5.68412 5.75599 6.09762 6.20976 6.37233 6.65815 6.86829 6.97420 7.36275 8.43482 8.65440 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003854 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.464392 B = 7264.145132 C = 7904.315094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.247 1.247 6 H -0.274 1.274 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.542 3.458 10 O -0.628 6.628 11 N -0.647 5.647 12 C 0.113 3.887 13 C 0.099 3.901 14 N -0.588 5.588 15 C 0.565 3.435 16 O -0.570 6.570 17 C 0.055 3.945 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.133 4.133 21 C 0.086 3.914 22 N -0.478 5.478 23 C 0.071 3.929 24 C 0.107 3.893 25 H 0.274 0.726 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.192 0.808 34 H 0.051 0.949 35 H 0.172 0.828 36 H 0.069 0.931 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 -20.697 -1.330 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.170 1.170 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.113 0.887 9 C 0.348 3.652 10 O -0.515 6.515 11 N -0.384 5.384 12 C -0.011 4.011 13 C -0.024 4.024 14 N -0.318 5.318 15 C 0.353 3.647 16 O -0.449 6.449 17 C -0.081 4.081 18 C -0.141 4.141 19 C -0.098 4.098 20 C -0.153 4.153 21 C -0.073 4.073 22 N -0.190 5.190 23 C -0.052 4.052 24 C -0.017 4.017 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.163 0.837 31 H 0.196 0.804 32 H 0.200 0.800 33 H 0.209 0.791 34 H 0.069 0.931 35 H 0.187 0.813 36 H 0.088 0.912 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.664 -19.892 -0.784 20.698 hybrid contribution 0.386 0.506 -0.264 0.689 sum 6.051 -19.387 -1.048 20.336 Atomic orbital electron populations 1.70180 1.09533 1.28957 1.36407 1.26975 0.95497 1.04894 0.91164 0.85049 0.78890 0.75174 0.79410 1.18697 1.17030 1.19872 1.21505 0.94852 0.89712 1.54473 0.88726 1.18679 0.86609 0.83999 0.75866 1.90535 1.16516 1.87240 1.57252 1.48084 1.06200 1.05966 1.78187 1.21995 0.80787 1.00818 0.97525 1.22180 0.98020 0.83098 0.99101 1.48008 1.08166 1.06173 1.69451 1.18431 0.86261 0.83540 0.76434 1.90718 1.14747 1.86486 1.52994 1.20892 0.91415 0.94655 1.01125 1.22210 1.01972 0.93025 0.96939 1.22086 0.94558 0.97114 0.96013 1.22831 0.95685 1.00777 0.95973 1.23585 1.01490 0.87860 0.94323 1.67141 1.06423 1.26433 1.19007 1.23396 0.78316 1.05411 0.98067 1.21661 0.97668 0.84664 0.97726 0.91571 0.92243 0.87959 0.91485 0.87577 0.83713 0.80406 0.80036 0.79136 0.93058 0.81301 0.91236 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.35 11.84 21.83 0.26 -50.09 16 2 C 0.03 1.67 5.50 85.30 0.47 2.13 16 3 Si 1.00 40.86 29.56 68.60 2.03 42.89 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.57 -32.14 8.86 24.83 0.22 -31.92 16 8 H 0.09 4.74 5.69 -2.91 -0.02 4.73 16 9 C 0.54 31.90 7.61 86.36 0.66 32.56 16 10 O -0.63 -42.44 14.46 -4.30 -0.06 -42.50 16 11 N -0.65 -30.61 2.94 -822.21 -2.42 -33.02 16 12 C 0.11 4.35 6.50 86.56 0.56 4.91 16 13 C 0.10 3.44 6.59 86.56 0.57 4.01 16 14 N -0.59 -20.27 2.95 -820.20 -2.42 -22.69 16 15 C 0.56 18.65 7.57 86.88 0.66 19.31 16 16 O -0.57 -20.95 16.05 -3.74 -0.06 -21.01 16 17 C 0.05 1.44 6.47 41.91 0.27 1.71 16 18 C -0.12 -2.36 9.63 22.61 0.22 -2.15 16 19 C -0.07 -0.82 10.17 22.45 0.23 -0.59 16 20 C -0.13 -1.25 10.12 22.44 0.23 -1.02 16 21 C 0.09 1.27 11.18 84.82 0.95 2.22 16 22 N -0.48 -11.29 6.39 -184.91 -1.18 -12.47 16 23 C 0.07 2.48 6.30 86.42 0.54 3.02 16 24 C 0.11 4.41 6.60 86.42 0.57 4.98 16 25 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 26 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.10 3.97 5.37 -2.39 -0.01 3.96 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.11 3.40 7.03 -2.39 -0.02 3.38 16 30 H 0.15 2.77 7.86 -2.91 -0.02 2.74 16 31 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.17 5.14 3.77 -67.41 -0.25 4.89 16 36 H 0.07 3.21 6.99 -2.38 -0.02 3.19 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -83.02 310.34 3.16 -79.86 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.86 Total: 19.86 kcal Atomic # 6 Polarization: 33.03 SS G_CDS: 6.14 Total: 39.18 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.76 Total: -118.28 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -0.12 Total: -63.51 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -83.02 3.16 -79.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169820184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.937 kcal (2) G-P(sol) polarization free energy of solvation -83.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds