Wall clock time and date at job start Tue Mar 31 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34238 * 116.99389 * 2 1 4 4 O 1.20826 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99733 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47233 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99648 * 269.99965 * 6 5 3 8 8 H 1.08002 * 119.99823 * 188.51152 * 7 6 5 9 9 C 1.38811 * 120.00294 * 8.50907 * 7 6 5 10 10 N 1.31619 * 119.99842 * 24.85011 * 9 7 6 11 11 Si 1.86799 * 120.00279 * 204.85647 * 9 7 6 12 12 H 1.48505 * 109.47192 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47258 * 119.99784 * 11 9 7 14 14 H 1.48496 * 109.47257 * 239.99961 * 11 9 7 15 15 C 1.46496 * 120.00411 * 89.99770 * 6 5 3 16 16 C 1.50704 * 109.47397 * 90.97648 * 15 6 5 17 17 C 1.35099 * 125.68589 * 94.99745 * 16 15 6 18 18 N 1.36842 * 107.17827 * 180.02562 * 17 16 15 19 19 C 1.36486 * 132.56608 * 179.97438 * 18 17 16 20 20 C 1.34953 * 120.60495 * 179.97438 * 19 18 17 21 21 C 1.40471 * 120.30077 * 0.03655 * 20 19 18 22 22 C 1.36024 * 119.69709 * 359.97438 * 21 20 19 23 23 C 1.37079 * 106.99845 * 359.97438 * 18 17 16 24 24 N 1.32552 * 108.03363 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47579 * 299.99619 * 1 2 3 26 26 H 1.08999 * 109.47080 * 60.00311 * 1 2 3 27 27 H 1.09003 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47349 * 59.99975 * 5 3 2 29 29 H 1.09004 * 109.47365 * 299.99979 * 5 3 2 30 30 H 0.97000 * 120.00219 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47435 * 330.97602 * 15 6 5 32 32 H 1.08999 * 109.47463 * 210.97821 * 15 6 5 33 33 H 1.07997 * 126.41449 * 0.02562 * 17 16 15 34 34 H 1.07997 * 119.69850 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.85111 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.14967 * 180.26129 * 21 20 19 37 37 H 1.07999 * 120.33826 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2751 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.1760 3.3368 -1.1847 8 1 4.6125 4.3247 -1.1895 9 6 3.8124 2.7329 -2.3805 10 7 2.8770 1.8071 -2.3924 11 14 4.6508 3.2340 -3.9728 12 1 5.6589 4.2875 -3.6912 13 1 5.3226 2.0528 -4.5715 14 1 3.6370 3.7606 -4.9215 15 6 4.1887 3.3822 1.2700 16 6 5.6280 3.2404 1.6935 17 6 6.6134 4.1311 1.4471 18 7 7.7608 3.6268 1.9965 19 6 9.0418 4.0945 2.0501 20 6 10.0076 3.3834 2.6688 21 6 9.7057 2.1486 3.2667 22 6 8.4330 1.6707 3.2204 23 6 7.4356 2.4254 2.5709 24 7 6.1419 2.2135 2.3746 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9564 0.7808 -0.8891 29 1 3.9557 0.7812 0.8908 30 1 2.6231 1.3848 -3.2279 31 1 3.5411 2.9513 2.0336 32 1 3.9493 4.4381 1.1442 33 1 6.5143 5.0662 0.9159 34 1 9.2847 5.0428 1.5939 35 1 11.0172 3.7653 2.7044 36 1 10.4796 1.5835 3.7649 37 1 8.1893 0.7228 3.6769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177619014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:47 Heat of formation + Delta-G solvation = 42.672410 kcal Electronic energy + Delta-G solvation = -22800.164162 eV Core-core repulsion = 19352.629751 eV Total energy + Delta-G solvation = -3447.534411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40434 -38.83997 -37.35046 -35.79315 -34.44551 -33.35233 -31.70563 -30.02533 -28.79297 -27.86282 -26.18743 -25.82497 -23.23391 -22.39903 -22.04984 -20.15391 -19.46526 -17.56022 -16.79945 -16.52475 -16.16243 -15.67274 -15.55228 -15.18969 -14.95987 -14.62775 -14.46971 -13.80352 -13.58161 -13.24211 -12.96827 -12.35618 -12.14726 -12.09279 -11.64975 -11.49773 -11.38344 -11.02342 -10.96935 -10.81664 -10.73141 -10.42178 -10.09378 -9.93544 -9.61088 -9.52464 -9.08518 -8.49461 -8.36185 -7.55303 -7.11716 -5.90757 -3.17171 0.90502 1.51899 2.88619 3.22781 3.36432 3.44091 3.46009 3.78023 3.99044 4.16539 4.45043 4.51465 4.61746 4.89119 4.96889 5.19076 5.32239 5.52318 5.60709 5.74717 5.83417 5.88479 5.94529 5.98638 6.16511 6.17579 6.21191 6.46669 6.49363 6.56882 6.68680 6.84633 7.08603 7.19718 7.40537 7.69185 7.86322 8.16776 8.35708 9.03881 9.47560 9.74157 10.15230 11.20791 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016098 B = 0.005249 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.909937 B = 5333.517034 C = 6491.858524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.382 6.382 3 C 0.470 3.530 4 O -0.511 6.511 5 C 0.190 3.810 6 N -0.559 5.559 7 C -0.249 4.249 8 H 0.081 0.919 9 C 0.001 3.999 10 N -0.901 5.901 11 Si 0.905 3.095 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.292 1.292 15 C 0.220 3.780 16 C 0.071 3.929 17 C -0.088 4.088 18 N -0.366 5.366 19 C 0.061 3.939 20 C -0.157 4.157 21 C -0.116 4.116 22 C -0.074 4.074 23 C 0.209 3.791 24 N -0.481 5.481 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 0.626 9.834 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.300 6.300 3 C 0.311 3.689 4 O -0.396 6.396 5 C 0.061 3.939 6 N -0.277 5.277 7 C -0.378 4.378 8 H 0.099 0.901 9 C -0.196 4.196 10 N -0.546 5.546 11 Si 0.735 3.265 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.219 1.219 15 C 0.091 3.909 16 C -0.064 4.064 17 C -0.219 4.219 18 N -0.039 5.039 19 C -0.062 4.062 20 C -0.178 4.178 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.034 4.034 24 N -0.202 5.202 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.948 0.259 9.886 14.027 hybrid contribution 0.573 1.074 -1.515 1.943 sum 10.522 1.334 8.371 13.511 Atomic orbital electron populations 1.22838 0.80020 1.01199 1.01170 1.86552 1.20817 1.36817 1.85773 1.25480 0.93433 0.80109 0.69912 1.90445 1.66718 1.36489 1.45949 1.20404 0.85261 0.86349 1.01879 1.43884 1.74862 1.07772 1.01156 1.19279 1.34498 1.01194 0.82820 0.90077 1.24709 0.97590 0.99422 0.97891 1.69859 1.27927 1.30627 1.26231 0.86178 0.79218 0.77655 0.83471 1.20437 1.21543 1.21925 1.19164 0.85949 0.97476 0.88282 1.22437 0.99226 0.89334 0.95363 1.22536 0.83889 1.04668 1.10792 1.42883 1.07333 1.17227 1.36447 1.21557 0.82322 1.00545 1.01774 1.20665 0.99161 0.96305 1.01705 1.20901 0.96266 0.96212 1.00581 1.20231 0.90387 0.99786 0.99029 1.21020 0.93171 0.87079 1.02134 1.70682 1.03770 1.25986 1.19803 0.93678 0.92938 0.90243 0.87099 0.92270 0.93260 0.92258 0.91147 0.80434 0.82576 0.83880 0.84644 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.78 10.57 -39.28 -0.41 -9.19 16 3 C 0.47 12.04 6.02 36.00 0.22 12.26 16 4 O -0.51 -14.45 15.91 -18.75 -0.30 -14.75 16 5 C 0.19 4.73 5.54 -5.20 -0.03 4.71 16 6 N -0.56 -13.95 2.00 -175.99 -0.35 -14.30 16 7 C -0.25 -6.68 9.70 -15.06 -0.15 -6.82 16 8 H 0.08 2.09 7.94 -52.49 -0.42 1.67 16 9 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 10 N -0.90 -25.86 8.96 55.49 0.50 -25.37 16 11 Si 0.90 21.73 29.62 -169.99 -5.04 16.69 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 C 0.22 4.69 6.20 -5.19 -0.03 4.66 16 16 C 0.07 1.41 6.64 -82.98 -0.55 0.86 16 17 C -0.09 -1.53 11.66 -16.43 -0.19 -1.72 16 18 N -0.37 -5.78 2.95 -62.66 -0.18 -5.96 16 19 C 0.06 0.71 10.95 -16.65 -0.18 0.52 16 20 C -0.16 -1.50 9.99 -39.91 -0.40 -1.90 16 21 C -0.12 -1.17 10.07 -39.54 -0.40 -1.57 16 22 C -0.07 -0.97 10.11 -39.36 -0.40 -1.37 16 23 C 0.21 3.58 7.81 -156.05 -1.22 2.36 16 24 N -0.48 -9.64 11.32 -9.01 -0.10 -9.74 16 25 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.11 2.97 6.30 -51.93 -0.33 2.65 16 29 H 0.06 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 32 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -34.48 324.19 -7.87 -42.35 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.52 Total: 1.57 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -2.35 Total: 13.81 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.14 Total: -55.37 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.71 Total: -23.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.48 -7.87 -42.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177619014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.017 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds