Wall clock time and date at job start Tue Mar 31 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99453 * 2 1 4 4 C 1.50698 * 109.47363 * 269.99775 * 3 2 1 5 5 H 1.08001 * 120.00208 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00275 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99478 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00294 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47229 * 60.00256 * 8 6 4 10 10 H 1.48504 * 109.46961 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47073 * 299.99898 * 8 6 4 12 12 C 1.34774 * 120.00350 * 180.02562 * 2 1 3 13 13 O 1.21275 * 120.00202 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99847 * 0.02562 * 12 2 1 15 15 H 1.09000 * 110.85622 * 307.34479 * 14 12 2 16 16 C 1.54896 * 110.83340 * 71.36010 * 14 12 2 17 17 C 1.51690 * 102.47507 * 142.55009 * 16 14 12 18 18 C 1.47647 * 125.86395 * 164.52366 * 17 16 14 19 19 C 1.40045 * 120.56292 * 179.71395 * 18 17 16 20 20 C 1.38346 * 118.28501 * 179.72849 * 19 18 17 21 21 C 1.38352 * 119.31289 * 359.97438 * 20 19 18 22 22 N 1.31910 * 121.08970 * 0.02562 * 21 20 19 23 23 C 1.31702 * 121.88199 * 0.02562 * 22 21 20 24 24 N 1.29082 * 108.26893 * 344.26177 * 17 16 14 25 25 O 1.41390 * 112.87215 * 359.92122 * 24 17 16 26 26 H 1.08998 * 109.47099 * 269.99621 * 1 2 3 27 27 H 1.08994 * 109.47283 * 29.99758 * 1 2 3 28 28 H 1.08996 * 109.46987 * 149.99870 * 1 2 3 29 29 H 1.08994 * 109.47496 * 30.00602 * 3 2 1 30 30 H 1.09006 * 109.46868 * 150.00592 * 3 2 1 31 31 H 0.97010 * 119.99931 * 179.97438 * 7 6 4 32 32 H 1.09000 * 110.91713 * 24.26464 * 16 14 12 33 33 H 1.09002 * 110.73836 * 260.74758 * 16 14 12 34 34 H 1.08001 * 120.85689 * 359.74721 * 19 18 17 35 35 H 1.08004 * 120.34194 * 180.02562 * 20 19 18 36 36 H 1.08001 * 119.45426 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.72323 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6730 8 14 3.4375 3.4173 -3.4338 9 1 2.1397 3.5957 -4.1332 10 1 4.1811 4.7027 -3.4337 11 1 4.2393 2.3822 -4.1345 12 6 2.1390 -1.1671 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 1 0.6561 -2.5000 0.8078 16 6 0.7099 -2.7171 -1.3739 17 6 0.8723 -4.2142 -1.5566 18 6 0.1428 -5.0509 -2.5300 19 6 0.3853 -6.4280 -2.6081 20 6 -0.3290 -7.1680 -3.5334 21 6 -1.2514 -6.5306 -4.3438 22 7 -1.4593 -5.2315 -4.2483 23 6 -0.8041 -4.4839 -3.3844 24 7 1.7618 -4.6299 -0.7187 25 8 2.2913 -3.5912 0.0812 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1385 0.5138 31 1 4.0322 4.4429 -0.8502 32 1 1.2260 -2.1724 -2.1645 33 1 -0.3447 -2.4437 -1.3391 34 1 1.1109 -6.9002 -1.9624 35 1 -0.1687 -8.2325 -3.6215 36 1 -1.8100 -7.1060 -5.0673 37 1 -1.0016 -3.4232 -3.3361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190038721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:45 Heat of formation + Delta-G solvation = 33.753409 kcal Electronic energy + Delta-G solvation = -22206.096790 eV Core-core repulsion = 18758.175622 eV Total energy + Delta-G solvation = -3447.921168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89673 -40.08787 -38.38369 -35.05647 -34.22837 -32.81424 -32.55104 -31.01138 -30.75193 -27.82480 -26.22873 -24.87269 -24.41049 -23.52283 -22.37449 -20.47676 -18.93541 -17.65948 -17.19505 -16.70622 -16.55785 -16.53451 -15.60735 -15.32699 -15.12123 -14.62189 -14.33357 -14.26691 -13.75892 -13.50394 -13.36172 -13.21331 -12.74564 -12.50300 -12.29686 -12.18640 -12.03247 -11.66444 -11.29456 -10.97588 -10.89252 -10.63030 -10.58213 -10.22036 -10.01685 -9.92855 -9.73514 -9.18418 -8.88026 -8.48985 -7.80610 -6.10262 -4.15911 0.19618 0.83715 1.92316 2.68380 3.08434 3.28324 3.33551 3.36613 3.44849 3.59940 3.81584 4.06748 4.29277 4.35418 4.41432 4.46307 4.51884 4.70694 4.75549 4.94644 4.99351 5.12017 5.24567 5.28396 5.45810 5.51913 5.58151 5.72452 5.76159 5.78461 6.06849 6.19527 6.89728 7.15185 7.33333 7.40199 7.50707 7.84672 8.14133 8.20638 8.76928 8.91805 9.49329 10.97914 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.003885 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.547170 B = 7205.711381 C = 7974.147398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.595 5.595 3 C 0.247 3.753 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.509 3.491 13 O -0.513 6.513 14 C 0.027 3.973 15 H 0.108 0.892 16 C -0.138 4.138 17 C 0.121 3.879 18 C -0.087 4.087 19 C -0.038 4.038 20 C -0.174 4.174 21 C 0.112 3.888 22 N -0.482 5.482 23 C 0.136 3.864 24 N -0.279 5.279 25 O -0.158 6.158 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 -18.174 -3.824 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.292 3.708 13 O -0.388 6.388 14 C -0.035 4.035 15 H 0.126 0.874 16 C -0.178 4.178 17 C -0.070 4.070 18 C -0.090 4.090 19 C -0.066 4.066 20 C -0.194 4.194 21 C -0.045 4.045 22 N -0.190 5.190 23 C -0.024 4.024 24 N -0.018 5.018 25 O -0.178 6.178 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.624 -18.416 -3.771 22.644 hybrid contribution 0.324 0.779 -0.575 1.021 sum -12.300 -17.637 -4.346 21.937 Atomic orbital electron populations 1.21842 0.81303 1.02951 1.00932 1.48106 1.06270 1.07278 1.71213 1.19362 0.92643 0.77459 0.97747 1.21354 1.37070 1.06476 0.92085 0.92471 1.24933 0.95199 0.96329 0.97536 1.69920 1.38000 1.14387 1.30863 0.86546 0.78413 0.77919 0.84492 1.20162 1.21081 1.20155 1.19675 0.88055 0.84049 0.79018 1.90738 1.13284 1.86446 1.48353 1.23698 0.92785 0.89318 0.97727 0.87420 1.23070 1.04443 0.92062 0.98179 1.24001 0.95118 0.94110 0.93731 1.18841 0.99265 0.93270 0.97626 1.21840 0.96508 0.92377 0.95860 1.22151 0.98088 1.01864 0.97294 1.22995 0.94423 0.90661 0.96423 1.67768 1.24649 1.06875 1.19716 1.23032 0.89843 1.00422 0.89129 1.78357 1.07960 1.12202 1.03244 1.91385 1.43101 1.20035 1.63289 0.93294 0.90094 0.92488 0.94550 0.93667 0.92531 0.86628 0.86776 0.83735 0.84007 0.82198 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.10 59.85 0.60 1.64 16 2 N -0.59 -12.07 2.86 -182.96 -0.52 -12.59 16 3 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.51 10.67 7.00 -10.99 -0.08 10.59 16 13 O -0.51 -13.53 16.17 -13.28 -0.21 -13.75 16 14 C 0.03 0.43 3.26 -26.88 -0.09 0.34 16 15 H 0.11 1.38 7.93 -51.93 -0.41 0.97 16 16 C -0.14 -1.71 4.83 -26.40 -0.13 -1.84 16 17 C 0.12 1.52 7.17 -79.42 -0.57 0.95 16 18 C -0.09 -0.89 5.89 -104.88 -0.62 -1.51 16 19 C -0.04 -0.34 9.82 -38.86 -0.38 -0.72 16 20 C -0.17 -1.19 10.10 -39.50 -0.40 -1.58 16 21 C 0.11 0.83 11.17 -17.48 -0.20 0.63 16 22 N -0.48 -4.69 10.35 -12.90 -0.13 -4.82 16 23 C 0.14 1.27 10.79 -17.11 -0.18 1.09 16 24 N -0.28 -4.34 12.19 35.30 0.43 -3.91 16 25 O -0.16 -2.93 11.82 -30.21 -0.36 -3.29 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.61 4.52 -51.93 -0.23 0.38 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.12 1.59 7.91 -51.93 -0.41 1.18 16 33 H 0.11 0.95 6.48 -51.93 -0.34 0.62 16 34 H 0.14 1.23 7.92 -52.49 -0.42 0.82 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.17 1.22 7.39 -52.49 -0.39 0.83 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -35.88 323.74 -6.92 -42.80 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.23 Total: -2.85 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.48 Total: 2.51 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.51 Total: -46.81 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.57 Total: -17.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.88 -6.92 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190038721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.554 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds