Wall clock time and date at job start Tue Mar 31 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47078 * 2 1 4 4 C 1.50700 * 109.46788 * 119.99789 * 2 1 3 5 5 H 1.08001 * 119.99862 * 120.00008 * 4 2 1 6 6 C 1.37879 * 120.00106 * 299.99538 * 4 2 1 7 7 N 1.31518 * 120.00151 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00115 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47194 * 89.99559 * 8 6 4 10 10 H 1.48492 * 109.47199 * 209.99685 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99824 * 8 6 4 12 12 N 1.46493 * 109.47105 * 239.99651 * 2 1 3 13 13 C 1.34775 * 120.00280 * 84.99907 * 12 2 1 14 14 O 1.21284 * 119.99806 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00255 * 179.97438 * 13 12 2 16 16 H 1.09001 * 110.88720 * 52.63723 * 15 13 12 17 17 C 1.54736 * 110.97469 * 288.81671 * 15 13 12 18 18 C 1.51683 * 102.55098 * 217.66343 * 17 15 13 19 19 C 1.47643 * 125.86438 * 195.37031 * 18 17 15 20 20 C 1.40045 * 120.56391 * 179.97438 * 19 18 17 21 21 C 1.38351 * 118.28991 * 179.97438 * 20 19 18 22 22 C 1.38351 * 119.30669 * 0.02562 * 21 20 19 23 23 N 1.31906 * 121.09139 * 0.02562 * 22 21 20 24 24 C 1.31703 * 121.88460 * 359.68394 * 23 22 21 25 25 N 1.29077 * 108.26937 * 15.39404 * 18 17 15 26 26 O 1.41395 * 112.87447 * 0.31822 * 25 18 17 27 27 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46692 * 300.00199 * 1 2 3 29 29 H 1.09000 * 109.46862 * 60.00084 * 1 2 3 30 30 H 0.97000 * 120.00448 * 180.02562 * 7 6 4 31 31 H 0.97004 * 119.99901 * 265.00128 * 12 2 1 32 32 H 1.09005 * 110.79113 * 99.39481 * 17 15 13 33 33 H 1.09005 * 110.95625 * 336.00913 * 17 15 13 34 34 H 1.08003 * 120.85537 * 359.97438 * 20 19 18 35 35 H 1.07997 * 120.34594 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.45014 * 180.02562 * 22 21 20 37 37 H 1.07995 * 119.72460 * 180.31508 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8595 3.5567 8 14 0.6249 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9952 3.9067 11 1 0.8472 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4115 15 6 2.6500 -0.7288 -3.5874 16 1 2.0705 -1.6319 -3.7789 17 6 4.1575 -1.0543 -3.4618 18 6 4.6632 -0.8239 -4.8731 19 6 5.9579 -1.2835 -5.4139 20 6 6.3138 -1.0083 -6.7401 21 6 7.5385 -1.4608 -7.1977 22 6 8.3644 -2.1643 -6.3392 23 7 8.0026 -2.4099 -5.0947 24 6 6.8499 -1.9957 -4.6107 25 7 3.7674 -0.1567 -5.5200 26 8 2.6333 0.1476 -4.7324 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9026 -0.5283 4.4377 31 1 2.2490 -1.6319 -1.1524 32 1 4.3057 -2.0918 -3.1621 33 1 4.6454 -0.3772 -2.7605 34 1 5.6492 -0.4570 -7.3889 35 1 7.8466 -1.2668 -8.2145 36 1 9.3211 -2.5183 -6.6939 37 1 6.5912 -2.2120 -3.5848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190719327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:10 Heat of formation + Delta-G solvation = 28.816401 kcal Electronic energy + Delta-G solvation = -21914.758588 eV Core-core repulsion = 18466.623335 eV Total energy + Delta-G solvation = -3448.135253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92972 -40.12295 -38.56626 -35.16364 -34.30172 -32.72227 -32.51388 -31.35143 -30.80987 -29.51207 -25.38154 -25.02548 -24.49518 -23.49033 -21.38417 -20.42805 -19.82074 -17.91441 -17.65416 -16.93671 -16.70219 -16.30824 -15.67242 -15.47899 -15.22107 -14.77868 -14.41011 -14.18132 -13.69815 -13.53451 -13.46973 -13.22680 -12.98833 -12.77123 -12.32206 -12.25828 -12.11331 -11.84052 -11.34610 -11.02873 -10.87362 -10.67067 -10.25458 -10.07754 -9.95076 -9.76479 -9.32902 -9.31977 -8.99472 -8.83563 -8.32435 -6.27497 -4.31050 0.15367 0.80986 1.86462 2.57349 2.92947 3.19651 3.32155 3.36242 3.41898 3.50239 3.77615 4.03136 4.23414 4.26327 4.32397 4.42682 4.48269 4.67902 4.73593 4.91881 5.07100 5.08542 5.17893 5.28042 5.41899 5.50613 5.68212 5.72258 6.16726 6.23582 6.30051 6.47828 6.77204 7.01011 7.11554 7.15227 7.40791 7.48610 8.00748 8.37636 8.63810 8.74552 9.32595 10.84349 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003385 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.571911 B = 8269.770213 C = 9080.728304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.238 3.762 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.509 3.491 14 O -0.529 6.529 15 C 0.026 3.974 16 H 0.112 0.888 17 C -0.139 4.139 18 C 0.124 3.876 19 C -0.089 4.089 20 C -0.038 4.038 21 C -0.175 4.175 22 C 0.113 3.887 23 N -0.482 5.482 24 C 0.137 3.863 25 N -0.280 5.280 26 O -0.159 6.159 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.397 0.603 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -5.087 -19.070 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.343 5.343 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.037 4.037 16 H 0.129 0.871 17 C -0.178 4.178 18 C -0.066 4.066 19 C -0.093 4.093 20 C -0.066 4.066 21 C -0.194 4.194 22 C -0.044 4.044 23 N -0.190 5.190 24 C -0.023 4.023 25 N -0.019 5.019 26 O -0.179 6.179 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.310 -4.053 -19.318 21.824 hybrid contribution -1.032 0.343 0.545 1.216 sum 8.278 -3.711 -18.773 20.850 Atomic orbital electron populations 1.22468 0.99100 1.01036 0.99527 1.19165 0.90305 0.94706 0.82343 0.93216 1.20993 1.33595 1.14556 0.88405 0.90056 1.24816 0.95416 0.96683 0.95497 1.69857 1.44694 1.40024 0.98094 0.86892 0.80589 0.83579 0.77568 1.20212 1.22054 1.18636 1.46125 1.64985 1.13898 1.09295 1.19830 0.79580 0.87558 0.83997 1.90724 1.49804 1.15501 1.84475 1.23641 0.96477 0.95008 0.88528 0.87058 1.22979 0.93283 1.06342 0.95244 1.23998 0.93269 0.95768 0.93567 1.18838 0.92340 1.02786 0.95308 1.21836 0.95961 0.94630 0.94125 1.22154 0.94970 1.00334 1.01989 1.23011 0.99274 0.93175 0.88909 1.67777 1.16672 1.19619 1.14899 1.23060 0.88165 0.91246 0.99816 1.78383 0.95389 1.11121 1.16989 1.91389 1.36839 1.56771 1.32881 0.92647 0.93269 0.94429 0.92174 0.76971 0.86586 0.86677 0.83764 0.83996 0.82164 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 2 C 0.24 5.48 2.15 -69.08 -0.15 5.33 16 3 H 0.05 1.28 6.64 -51.93 -0.34 0.93 16 4 C -0.54 -13.96 9.31 -34.44 -0.32 -14.28 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.71 13.96 55.43 0.77 -24.93 16 8 Si 0.88 21.37 24.37 -169.99 -4.14 17.22 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.06 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.69 -12.86 5.07 -54.93 -0.28 -13.14 16 13 C 0.51 9.43 7.10 -10.98 -0.08 9.35 16 14 O -0.53 -12.28 16.25 -13.28 -0.22 -12.50 16 15 C 0.03 0.37 4.23 -26.97 -0.11 0.25 16 16 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.14 -1.53 5.82 -26.48 -0.15 -1.69 16 18 C 0.12 1.44 7.17 -79.43 -0.57 0.87 16 19 C -0.09 -0.86 5.89 -104.88 -0.62 -1.48 16 20 C -0.04 -0.32 9.82 -38.86 -0.38 -0.70 16 21 C -0.17 -1.12 10.10 -39.50 -0.40 -1.52 16 22 C 0.11 0.80 11.17 -17.48 -0.20 0.61 16 23 N -0.48 -4.55 10.34 -12.90 -0.13 -4.68 16 24 C 0.14 1.23 10.79 -17.11 -0.18 1.05 16 25 N -0.28 -4.05 12.19 35.30 0.43 -3.62 16 26 O -0.16 -2.72 11.82 -30.21 -0.36 -3.07 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.40 6.13 8.54 -40.82 -0.35 5.78 16 32 H 0.12 0.86 7.98 -51.93 -0.41 0.45 16 33 H 0.12 1.35 7.91 -51.93 -0.41 0.94 16 34 H 0.14 1.14 7.92 -52.48 -0.42 0.73 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.17 1.17 7.40 -52.49 -0.39 0.78 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -34.20 318.97 -6.25 -40.45 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.21 Total: 2.83 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.93 Total: -3.36 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.79 Total: -46.38 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.57 Total: -15.57 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.20 -6.25 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190719327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.269 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds