Wall clock time and date at job start Tue Mar 31 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 300.00455 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21282 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00380 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.86095 * 52.65300 * 15 13 12 17 17 C 1.54737 * 110.97085 * 288.81668 * 15 13 12 18 18 C 1.51690 * 102.54868 * 217.66236 * 17 15 13 19 19 C 1.47649 * 125.86445 * 195.37161 * 18 17 15 20 20 C 1.40038 * 120.56398 * 180.02562 * 19 18 17 21 21 C 1.38352 * 118.28645 * 179.97438 * 20 19 18 22 22 C 1.38346 * 119.31208 * 0.02562 * 21 20 19 23 23 N 1.31914 * 121.09083 * 0.02562 * 22 21 20 24 24 C 1.31703 * 121.87689 * 359.68512 * 23 22 21 25 25 N 1.29079 * 108.26921 * 15.39126 * 18 17 15 26 26 O 1.41384 * 112.87049 * 0.31913 * 25 18 17 27 27 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 28 28 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 29 29 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 30 30 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 31 31 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 32 32 H 1.08998 * 110.79492 * 335.92507 * 17 15 13 33 33 H 1.09000 * 110.79756 * 99.40102 * 17 15 13 34 34 H 1.08005 * 120.85879 * 359.97438 * 20 19 18 35 35 H 1.08010 * 120.34177 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.44999 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.71508 * 180.31736 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0452 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4118 15 6 2.6499 -0.7286 3.5874 16 1 3.5907 -1.2397 3.3833 17 6 1.5888 -1.7156 4.1297 18 6 1.7451 -1.5752 5.6319 19 6 1.2131 -2.5053 6.6477 20 6 1.4235 -2.2667 8.0115 21 6 0.9036 -3.1685 8.9228 22 6 0.1997 -4.2670 8.4623 23 7 0.0177 -4.4671 7.1712 24 6 0.4879 -3.6348 6.2653 25 7 2.4229 -0.5027 5.8697 26 8 2.7896 0.1880 4.6918 27 1 -0.3633 0.4124 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 -0.3634 0.6090 0.8277 30 1 2.2403 -1.8401 -3.4691 31 1 2.2491 -1.6318 1.1525 32 1 0.5881 -1.4191 3.8154 33 1 1.8095 -2.7345 3.8113 34 1 1.9774 -1.4009 8.3434 35 1 1.0458 -3.0166 9.9826 36 1 -0.2068 -4.9726 9.1717 37 1 0.3140 -3.8300 5.2174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190719345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:13 Heat of formation + Delta-G solvation = 20.977505 kcal Electronic energy + Delta-G solvation = -21923.240956 eV Core-core repulsion = 18474.765784 eV Total energy + Delta-G solvation = -3448.475173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96738 -40.15608 -38.56169 -35.12898 -34.33368 -32.76959 -32.56203 -31.33092 -30.84804 -29.37147 -25.24889 -24.81297 -24.52535 -23.50063 -21.22099 -20.41614 -19.75359 -18.14732 -17.71811 -17.16415 -16.79035 -16.65664 -15.67568 -15.39566 -15.21737 -14.58672 -14.40313 -14.01097 -13.73442 -13.56741 -13.44930 -13.25017 -12.78175 -12.74568 -12.36250 -12.34682 -12.05628 -11.78333 -11.46540 -11.06300 -10.71393 -10.53940 -10.13321 -10.09314 -10.00117 -9.84938 -9.40577 -9.16831 -9.03419 -8.39554 -8.35452 -6.65165 -4.29418 0.11153 0.76479 1.82365 2.54381 2.93181 3.34827 3.37276 3.42137 3.46434 3.56771 3.75263 3.98246 4.19337 4.29508 4.36725 4.38102 4.44456 4.63758 4.70001 4.87864 5.06067 5.10987 5.14601 5.23641 5.34941 5.46765 5.63994 5.68307 6.12088 6.29339 6.44735 6.57571 6.85455 7.00651 7.17399 7.25751 7.43532 7.52967 8.15568 8.27734 8.57777 8.78554 9.39677 10.75879 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030766 B = 0.003239 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.876262 B = 8643.635572 C = 9156.854515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.242 3.758 3 H 0.043 0.957 4 C -0.620 4.620 5 H 0.062 0.938 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 1.041 2.959 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.279 1.279 12 N -0.694 5.694 13 C 0.507 3.493 14 O -0.529 6.529 15 C 0.025 3.975 16 H 0.112 0.888 17 C -0.138 4.138 18 C 0.122 3.878 19 C -0.089 4.089 20 C -0.038 4.038 21 C -0.174 4.174 22 C 0.113 3.887 23 N -0.482 5.482 24 C 0.136 3.864 25 N -0.279 5.279 26 O -0.157 6.157 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.029 0.971 30 H 0.269 0.731 31 H 0.394 0.606 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -7.938 22.403 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.140 3.860 3 H 0.060 0.940 4 C -0.658 4.658 5 H 0.081 0.919 6 C -0.167 4.167 7 N -0.528 5.528 8 Si 0.868 3.132 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.205 1.205 12 N -0.343 5.343 13 C 0.289 3.711 14 O -0.405 6.405 15 C -0.037 4.037 16 H 0.129 0.871 17 C -0.177 4.177 18 C -0.068 4.068 19 C -0.092 4.092 20 C -0.065 4.065 21 C -0.194 4.194 22 C -0.044 4.044 23 N -0.190 5.190 24 C -0.024 4.024 25 N -0.017 5.017 26 O -0.177 6.177 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.179 0.821 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.687 -5.760 21.731 22.642 hybrid contribution 0.906 -1.463 0.662 1.844 sum -1.780 -7.223 22.393 23.597 Atomic orbital electron populations 1.22512 0.98670 1.00191 1.00614 1.19076 0.90696 0.94279 0.81995 0.93961 1.22045 1.42111 1.10632 0.90986 0.91944 1.25686 0.94174 1.05124 0.91682 1.70887 1.40662 1.09874 1.31369 0.84091 0.77703 0.75041 0.76337 1.20792 1.19710 1.20528 1.46231 1.64946 1.13770 1.09396 1.19842 0.79553 0.87649 0.84056 1.90717 1.49816 1.15460 1.84553 1.23662 0.99597 0.90839 0.89649 0.87057 1.22966 1.02259 1.02440 0.90077 1.23990 0.94303 0.94072 0.94429 1.18835 1.02450 0.95979 0.91938 1.21843 0.94841 0.98381 0.91475 1.22161 0.99942 0.95913 1.01345 1.23010 0.93553 0.95452 0.92376 1.67776 1.19508 1.29292 1.02416 1.23029 0.91058 0.88303 1.00021 1.78380 1.09980 1.05501 1.07842 1.91394 1.85254 1.30925 1.10170 0.91686 0.93594 0.95175 0.92048 0.77237 0.86913 0.86705 0.83722 0.83952 0.82141 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.16 37.16 0.34 -3.18 16 2 C 0.24 5.65 2.14 -69.08 -0.15 5.50 16 3 H 0.04 1.09 6.23 -51.93 -0.32 0.76 16 4 C -0.62 -16.25 9.00 -34.44 -0.31 -16.56 16 5 H 0.06 1.69 7.96 -52.48 -0.42 1.28 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.02 16 7 N -0.90 -26.11 13.70 55.43 0.76 -25.35 16 8 Si 1.04 24.71 26.29 -169.99 -4.47 20.25 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.02 5.76 56.52 0.33 -5.69 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.69 -13.22 5.07 -54.94 -0.28 -13.50 16 13 C 0.51 9.59 7.10 -10.99 -0.08 9.51 16 14 O -0.53 -12.40 16.25 -13.28 -0.22 -12.62 16 15 C 0.02 0.36 4.23 -26.97 -0.11 0.25 16 16 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.14 -1.49 5.83 -26.48 -0.15 -1.65 16 18 C 0.12 1.40 7.17 -79.42 -0.57 0.83 16 19 C -0.09 -0.83 5.89 -104.88 -0.62 -1.45 16 20 C -0.04 -0.31 9.82 -38.86 -0.38 -0.69 16 21 C -0.17 -1.07 10.10 -39.50 -0.40 -1.47 16 22 C 0.11 0.77 11.17 -17.48 -0.20 0.57 16 23 N -0.48 -4.36 10.35 -12.90 -0.13 -4.50 16 24 C 0.14 1.17 10.79 -17.11 -0.18 0.98 16 25 N -0.28 -4.03 12.19 35.30 0.43 -3.60 16 26 O -0.16 -2.72 11.82 -30.20 -0.36 -3.08 16 27 H 0.06 1.47 4.88 -51.93 -0.25 1.21 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.27 7.75 8.73 -40.82 -0.36 7.39 16 31 H 0.39 6.35 8.53 -40.82 -0.35 6.01 16 32 H 0.11 1.26 7.90 -51.93 -0.41 0.85 16 33 H 0.11 0.83 7.98 -51.93 -0.41 0.41 16 34 H 0.14 1.13 7.92 -52.48 -0.42 0.71 16 35 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 36 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.17 1.07 7.40 -52.49 -0.39 0.69 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -34.19 321.40 -6.64 -40.83 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.31 Total: 3.08 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.91 Total: -6.34 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.78 Total: -46.96 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.57 Total: -15.70 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -4.47 Total: 20.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.19 -6.64 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190719345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.807 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds