Wall clock time and date at job start Tue Mar 31 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 300.00455 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21282 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00380 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.86095 * 52.65300 * 15 13 12 17 17 C 1.54737 * 110.97085 * 288.81668 * 15 13 12 18 18 C 1.51690 * 102.54868 * 217.66236 * 17 15 13 19 19 C 1.47649 * 125.86445 * 195.37161 * 18 17 15 20 20 C 1.40038 * 120.56398 * 180.02562 * 19 18 17 21 21 C 1.38352 * 118.28645 * 179.97438 * 20 19 18 22 22 C 1.38346 * 119.31208 * 0.02562 * 21 20 19 23 23 N 1.31914 * 121.09083 * 0.02562 * 22 21 20 24 24 C 1.31703 * 121.87689 * 359.68512 * 23 22 21 25 25 N 1.29079 * 108.26921 * 15.39126 * 18 17 15 26 26 O 1.41384 * 112.87049 * 0.31913 * 25 18 17 27 27 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 28 28 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 29 29 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 30 30 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 31 31 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 32 32 H 1.08998 * 110.79492 * 335.92507 * 17 15 13 33 33 H 1.09000 * 110.79756 * 99.40102 * 17 15 13 34 34 H 1.08005 * 120.85879 * 359.97438 * 20 19 18 35 35 H 1.08010 * 120.34177 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.44999 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.71508 * 180.31736 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0452 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1583 2.4118 15 6 2.6499 -0.7286 3.5874 16 1 3.5907 -1.2397 3.3833 17 6 1.5888 -1.7156 4.1297 18 6 1.7451 -1.5752 5.6319 19 6 1.2131 -2.5053 6.6477 20 6 1.4235 -2.2667 8.0115 21 6 0.9036 -3.1685 8.9228 22 6 0.1997 -4.2670 8.4623 23 7 0.0177 -4.4671 7.1712 24 6 0.4879 -3.6348 6.2653 25 7 2.4229 -0.5027 5.8697 26 8 2.7896 0.1880 4.6918 27 1 -0.3633 0.4124 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 -0.3634 0.6090 0.8277 30 1 2.2403 -1.8401 -3.4691 31 1 2.2491 -1.6318 1.1525 32 1 0.5881 -1.4191 3.8154 33 1 1.8095 -2.7345 3.8113 34 1 1.9774 -1.4009 8.3434 35 1 1.0458 -3.0166 9.9826 36 1 -0.2068 -4.9726 9.1717 37 1 0.3140 -3.8300 5.2174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190719345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:12 Heat of formation + Delta-G solvation = -3.729342 kcal Electronic energy + Delta-G solvation = -21924.312326 eV Core-core repulsion = 18474.765784 eV Total energy + Delta-G solvation = -3449.546542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93491 -40.99483 -39.95781 -36.90666 -35.24174 -34.58356 -33.30018 -32.68036 -31.59737 -30.89087 -26.93263 -26.13729 -25.22749 -24.24813 -22.78028 -21.42174 -21.29782 -19.93109 -18.58411 -18.45922 -17.71037 -17.42437 -16.96840 -16.55872 -16.42377 -15.74845 -15.51714 -15.14779 -15.02041 -14.67661 -14.44070 -14.36405 -14.27046 -14.13810 -13.93587 -13.58325 -13.42024 -13.03141 -12.93437 -12.44561 -11.98532 -11.97900 -11.72955 -11.60505 -11.18992 -10.93339 -10.65560 -10.57885 -10.48175 -10.06421 -9.87625 -8.81337 -6.45995 -0.56830 0.20836 1.03455 1.33594 1.44744 1.50289 1.56710 1.69338 2.32223 2.40013 2.75837 2.79475 2.99807 3.18740 3.23920 3.53795 3.62873 3.79786 3.83117 3.93416 4.11509 4.22253 4.39586 4.46820 4.47690 4.66001 4.69686 4.74919 4.76328 5.02733 5.05509 5.12401 5.40614 5.50988 5.59867 5.60148 5.99674 6.06036 6.50724 6.66283 6.87535 7.18989 7.30967 8.59230 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.030766 B = 0.003239 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.876262 B = 8643.635572 C = 9156.854515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.020 0.980 4 C -0.613 4.613 5 H 0.047 0.953 6 C -0.002 4.002 7 N -0.926 5.926 8 Si 1.069 2.931 9 H -0.282 1.282 10 H -0.247 1.247 11 H -0.277 1.277 12 N -0.687 5.687 13 C 0.509 3.491 14 O -0.579 6.579 15 C 0.029 3.971 16 H 0.138 0.862 17 C -0.133 4.133 18 C 0.149 3.851 19 C -0.110 4.110 20 C -0.046 4.046 21 C -0.166 4.166 22 C 0.116 3.884 23 N -0.507 5.507 24 C 0.138 3.862 25 N -0.311 5.311 26 O -0.204 6.204 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.411 0.589 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 -9.507 24.638 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.037 0.963 4 C -0.651 4.651 5 H 0.066 0.934 6 C -0.204 4.204 7 N -0.560 5.560 8 Si 0.892 3.108 9 H -0.207 1.207 10 H -0.172 1.172 11 H -0.203 1.203 12 N -0.338 5.338 13 C 0.293 3.707 14 O -0.459 6.459 15 C -0.033 4.033 16 H 0.156 0.844 17 C -0.172 4.172 18 C -0.041 4.041 19 C -0.114 4.114 20 C -0.073 4.073 21 C -0.185 4.185 22 C -0.040 4.040 23 N -0.215 5.215 24 C -0.022 4.022 25 N -0.054 5.054 26 O -0.220 6.220 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.246 0.754 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.191 0.809 36 H 0.208 0.792 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.603 -7.359 23.973 25.335 hybrid contribution 1.177 -1.128 0.142 1.636 sum -2.427 -8.487 24.115 25.680 Atomic orbital electron populations 1.22380 0.97176 1.01267 1.00423 1.18794 0.91758 0.93003 0.82521 0.96265 1.22214 1.40851 1.09859 0.92140 0.93449 1.26709 0.94220 1.07585 0.91849 1.70982 1.42989 1.09785 1.32292 0.83723 0.78715 0.71747 0.76623 1.20718 1.17184 1.20293 1.45970 1.64816 1.14428 1.08551 1.20533 0.78146 0.87079 0.84947 1.90688 1.51882 1.17834 1.85472 1.23656 1.01681 0.90726 0.87255 0.84434 1.23065 1.01052 1.03729 0.89392 1.24355 0.91754 0.92735 0.95228 1.18862 1.04160 0.96395 0.91968 1.22032 0.94892 0.98860 0.91565 1.22477 0.98646 0.94838 1.02580 1.23599 0.92427 0.95814 0.92195 1.67851 1.20362 1.29784 1.03497 1.23285 0.90246 0.87665 1.00971 1.78434 1.13393 1.07274 1.06258 1.91361 1.86075 1.33055 1.11545 0.92518 0.92071 0.94502 0.93028 0.75351 0.86880 0.82301 0.83897 0.80888 0.79174 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.50 9.16 71.98 0.66 -5.84 16 2 C 0.24 11.20 2.14 44.25 0.09 11.30 16 3 H 0.02 1.00 6.23 -2.39 -0.01 0.98 16 4 C -0.61 -32.03 9.00 25.60 0.23 -31.80 16 5 H 0.05 2.57 7.96 -2.91 -0.02 2.55 16 6 C 0.00 -0.12 5.29 84.65 0.45 0.33 16 7 N -0.93 -54.54 13.70 21.45 0.29 -54.24 16 8 Si 1.07 49.64 26.29 68.60 1.80 51.44 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 10 H -0.25 -10.47 5.76 99.48 0.57 -9.90 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.69 -25.43 5.07 -446.11 -2.26 -27.69 16 13 C 0.51 18.93 7.10 87.66 0.62 19.55 16 14 O -0.58 -27.45 16.25 14.98 0.24 -27.21 16 15 C 0.03 0.80 4.23 30.44 0.13 0.93 16 16 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 17 C -0.13 -2.55 5.83 30.76 0.18 -2.37 16 18 C 0.15 3.16 7.17 45.77 0.33 3.49 16 19 C -0.11 -1.83 5.89 -20.03 -0.12 -1.95 16 20 C -0.05 -0.66 9.82 22.73 0.22 -0.44 16 21 C -0.17 -1.51 10.10 22.32 0.23 -1.28 16 22 C 0.12 1.17 11.17 84.71 0.95 2.12 16 23 N -0.51 -7.69 10.35 -194.72 -2.01 -9.71 16 24 C 0.14 1.99 10.79 85.03 0.92 2.90 16 25 N -0.31 -8.87 12.19 -42.23 -0.51 -9.38 16 26 O -0.20 -7.08 11.82 -20.29 -0.24 -7.32 16 27 H 0.06 2.47 4.88 -2.39 -0.01 2.46 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.26 15.26 8.73 -92.71 -0.81 14.45 16 31 H 0.41 12.47 8.53 -92.70 -0.79 11.68 16 32 H 0.11 2.25 7.90 -2.39 -0.02 2.23 16 33 H 0.16 1.62 7.98 -2.39 -0.02 1.60 16 34 H 0.14 2.05 7.92 -2.91 -0.02 2.03 16 35 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 36 H 0.19 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.18 1.77 7.40 -2.91 -0.02 1.75 16 Total: -1.00 -76.06 321.40 2.35 -73.71 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.15 Total: 13.48 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.89 Total: -3.07 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.50 Total: -101.02 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: 0.00 Total: -34.54 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.80 Total: 51.44 kcal Total: -76.06 2.35 -73.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190719345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.983 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds