Wall clock time and date at job start Tue Mar 31 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47540 * 2 1 4 4 C 1.50698 * 109.47403 * 239.99397 * 2 1 3 5 5 H 1.07995 * 120.00036 * 335.25888 * 4 2 1 6 6 C 1.37878 * 119.99788 * 155.25872 * 4 2 1 7 7 N 1.31509 * 120.00164 * 355.15398 * 6 4 2 8 8 Si 1.86804 * 119.99692 * 175.15708 * 6 4 2 9 9 H 1.48493 * 109.47398 * 59.99892 * 8 6 4 10 10 H 1.48495 * 109.46876 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46898 * 299.99806 * 8 6 4 12 12 N 1.46506 * 109.46635 * 119.99458 * 2 1 3 13 13 C 1.34774 * 120.00108 * 274.99720 * 12 2 1 14 14 O 1.21279 * 120.00152 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99909 * 179.97438 * 13 12 2 16 16 H 1.08995 * 110.86495 * 301.20570 * 15 13 12 17 17 C 1.54745 * 110.97213 * 65.00447 * 15 13 12 18 18 C 1.51687 * 102.54912 * 142.33397 * 17 15 13 19 19 C 1.47646 * 125.86386 * 164.61144 * 18 17 15 20 20 C 1.40043 * 120.56711 * 179.97438 * 19 18 17 21 21 C 1.38344 * 118.29187 * 179.97438 * 20 19 18 22 22 C 1.38350 * 119.30766 * 0.02562 * 21 20 19 23 23 N 1.31914 * 121.09523 * 0.02562 * 22 21 20 24 24 C 1.31710 * 121.87524 * 359.65197 * 23 22 21 25 25 N 1.29074 * 108.27032 * 344.60923 * 18 17 15 26 26 O 1.41391 * 112.87506 * 359.68183 * 25 18 17 27 27 H 1.08997 * 109.46266 * 55.03472 * 1 2 3 28 28 H 1.08996 * 109.47018 * 175.03087 * 1 2 3 29 29 H 1.09000 * 109.47184 * 295.03491 * 1 2 3 30 30 H 0.97004 * 120.00060 * 5.13093 * 7 6 4 31 31 H 0.97008 * 119.99856 * 95.00447 * 12 2 1 32 32 H 1.08997 * 110.79456 * 260.60298 * 17 15 13 33 33 H 1.09006 * 110.78735 * 24.06933 * 17 15 13 34 34 H 1.08007 * 120.85448 * 0.02562 * 20 19 18 35 35 H 1.07997 * 120.34696 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.45294 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.71702 * 180.34134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 1.4117 -1.4457 -1.7207 6 6 3.2847 -0.4220 -1.7300 7 7 4.0021 0.5395 -1.1912 8 14 3.9621 -1.3968 -3.1723 9 1 3.0632 -1.2374 -4.3434 10 1 5.3165 -0.8945 -3.5167 11 1 4.0451 -2.8329 -2.8038 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6487 -0.7286 3.5879 16 1 2.0028 -1.5692 3.8412 17 6 4.1133 -1.1920 3.4015 18 6 4.7099 -0.9602 4.7768 19 6 5.9853 -1.5157 5.2712 20 6 6.4329 -1.2278 6.5666 21 6 7.6345 -1.7737 6.9816 22 6 8.3490 -2.5783 6.1120 23 7 7.9035 -2.8318 4.8965 24 6 6.7630 -2.3409 4.4574 25 7 3.9109 -0.1938 5.4405 26 8 2.7685 0.1840 4.6980 27 1 -0.3632 0.5889 -0.8422 28 1 -0.3633 -1.0238 -0.0890 29 1 -0.3633 0.4349 0.9311 30 1 3.6832 0.9957 -0.3967 31 1 2.2490 -1.6318 1.1528 32 1 4.1541 -2.2481 3.1350 33 1 4.6194 -0.5830 2.6525 34 1 5.8546 -0.5966 7.2250 35 1 8.0108 -1.5738 7.9739 36 1 9.2876 -3.0053 6.4334 37 1 6.4288 -2.5754 3.4576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190719380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:19 Heat of formation + Delta-G solvation = 12.201660 kcal Electronic energy + Delta-G solvation = -22236.801528 eV Core-core repulsion = 18787.945806 eV Total energy + Delta-G solvation = -3448.855722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78529 -39.96934 -38.32059 -35.06155 -34.16653 -32.59877 -32.34630 -31.08438 -30.68544 -29.10686 -25.06726 -24.72166 -24.36922 -23.35547 -21.38734 -20.34552 -19.63086 -17.86757 -17.51840 -16.94349 -16.56367 -16.40331 -15.49176 -15.26898 -14.75506 -14.45862 -14.00911 -13.92895 -13.80903 -13.49326 -13.42693 -13.30005 -12.94646 -12.63266 -12.19343 -11.98946 -11.76460 -11.29260 -11.07037 -10.95482 -10.87296 -10.55110 -10.29982 -10.12402 -9.95623 -9.85827 -9.33977 -9.00535 -8.78774 -8.57015 -8.00202 -6.63656 -4.45569 0.26224 0.90224 1.99167 2.77351 3.15986 3.29231 3.31581 3.50612 3.51672 3.69556 3.96331 4.14043 4.31814 4.39308 4.48284 4.54433 4.57580 4.78262 4.89678 5.02077 5.15441 5.27883 5.35529 5.49403 5.61503 5.66315 5.80050 5.83194 6.26423 6.29510 6.45346 6.52850 6.96129 7.14369 7.19861 7.52594 7.57970 7.76716 8.16122 8.47239 8.63432 8.99950 9.34963 10.72483 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.004425 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.543044 B = 6326.629666 C = 7769.861025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.608 4.608 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.886 5.886 8 Si 1.069 2.931 9 H -0.285 1.285 10 H -0.281 1.281 11 H -0.285 1.285 12 N -0.696 5.696 13 C 0.502 3.498 14 O -0.538 6.538 15 C 0.023 3.977 16 H 0.107 0.893 17 C -0.138 4.138 18 C 0.123 3.877 19 C -0.087 4.087 20 C -0.039 4.039 21 C -0.175 4.175 22 C 0.112 3.888 23 N -0.482 5.482 24 C 0.137 3.863 25 N -0.283 5.283 26 O -0.160 6.160 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.277 0.723 31 H 0.387 0.613 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -9.217 13.289 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.646 4.646 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.519 5.519 8 Si 0.896 3.104 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.211 1.211 12 N -0.347 5.347 13 C 0.284 3.716 14 O -0.415 6.415 15 C -0.040 4.040 16 H 0.125 0.875 17 C -0.178 4.178 18 C -0.067 4.067 19 C -0.090 4.090 20 C -0.066 4.066 21 C -0.195 4.195 22 C -0.045 4.045 23 N -0.190 5.190 24 C -0.023 4.023 25 N -0.021 5.021 26 O -0.180 6.180 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.689 -8.245 12.689 16.975 hybrid contribution -1.700 -0.258 0.877 1.930 sum 5.990 -8.503 13.567 17.095 Atomic orbital electron populations 1.21997 0.98300 1.00056 0.99585 1.18937 0.90129 0.95066 0.82274 0.92709 1.22124 1.03995 1.27376 1.11126 0.92373 1.26052 0.93935 0.95741 1.02009 1.70767 1.40986 1.18971 1.21212 0.83544 0.76541 0.75322 0.75005 1.21119 1.20604 1.21084 1.47771 1.64199 1.13634 1.09145 1.20065 0.79634 0.87785 0.84158 1.90684 1.50583 1.15601 1.84673 1.23771 0.96841 0.93913 0.89431 0.87540 1.22982 0.93294 1.05634 0.95881 1.24003 0.93586 0.95523 0.93588 1.18844 0.93076 1.01327 0.95802 1.21828 0.95023 0.95480 0.94295 1.22138 0.95820 0.99590 1.01958 1.22999 0.99059 0.93561 0.88893 1.67783 1.13372 1.22058 1.15749 1.23071 0.88983 0.90799 0.99404 1.78339 0.95950 1.10404 1.17447 1.91374 1.38027 1.50899 1.37671 0.92874 0.94009 0.94888 0.91126 0.77984 0.86935 0.86594 0.83796 0.84044 0.82211 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.46 37.16 0.35 -2.67 16 2 C 0.23 5.66 2.29 -69.08 -0.16 5.50 16 3 H 0.06 1.53 6.11 -51.93 -0.32 1.22 16 4 C -0.61 -15.39 8.50 -34.44 -0.29 -15.68 16 5 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 6 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 7 N -0.89 -25.02 13.63 55.43 0.76 -24.26 16 8 Si 1.07 22.78 29.91 -169.99 -5.08 17.70 16 9 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 N -0.70 -14.41 5.06 -54.93 -0.28 -14.69 16 13 C 0.50 10.53 7.10 -10.99 -0.08 10.45 16 14 O -0.54 -13.75 16.25 -13.29 -0.22 -13.97 16 15 C 0.02 0.38 4.23 -26.96 -0.11 0.27 16 16 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 17 C -0.14 -1.91 5.83 -26.48 -0.15 -2.06 16 18 C 0.12 1.70 7.17 -79.43 -0.57 1.13 16 19 C -0.09 -1.00 5.89 -104.88 -0.62 -1.62 16 20 C -0.04 -0.38 9.82 -38.87 -0.38 -0.76 16 21 C -0.18 -1.35 10.10 -39.50 -0.40 -1.75 16 22 C 0.11 0.94 11.17 -17.47 -0.20 0.74 16 23 N -0.48 -5.27 10.35 -12.90 -0.13 -5.40 16 24 C 0.14 1.48 10.79 -17.11 -0.18 1.30 16 25 N -0.28 -4.64 12.19 35.30 0.43 -4.21 16 26 O -0.16 -3.07 11.82 -30.22 -0.36 -3.43 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.28 8.09 6.66 -40.82 -0.27 7.82 16 31 H 0.39 6.99 8.59 -40.82 -0.35 6.64 16 32 H 0.11 1.14 7.96 -51.93 -0.41 0.72 16 33 H 0.12 1.81 7.90 -51.93 -0.41 1.40 16 34 H 0.14 1.35 7.92 -52.48 -0.42 0.93 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.17 1.54 7.39 -52.49 -0.39 1.15 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -33.14 327.35 -7.15 -40.29 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.31 Total: 7.47 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.89 Total: -4.43 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.77 Total: -48.57 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.57 Total: -17.40 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.08 Total: 17.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.14 -7.15 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190719380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.492 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds