Wall clock time and date at job start Tue Mar 31 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39286 * 125.81634 * 2 1 4 4 C 1.38651 * 133.33624 * 359.67563 * 3 2 1 5 5 C 1.38108 * 119.85200 * 179.85428 * 4 3 2 6 6 C 1.38445 * 120.27837 * 0.48294 * 5 4 3 7 7 C 1.38098 * 120.28496 * 359.73777 * 6 5 4 8 8 C 1.38663 * 119.85477 * 0.02562 * 7 6 5 9 9 N 1.39285 * 133.34240 * 179.97438 * 8 7 6 10 10 C 1.46501 * 125.81396 * 0.02904 * 9 8 7 11 11 C 1.52996 * 109.47356 * 89.99485 * 10 9 8 12 12 C 1.50702 * 109.47164 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99850 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99865 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99982 * 180.02562 * 14 12 11 16 16 H 1.07997 * 119.99361 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00194 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99565 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47202 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47340 * 119.99963 * 19 17 15 22 22 H 1.48506 * 109.47245 * 240.00018 * 19 17 15 23 23 C 1.34633 * 108.36531 * 180.02562 * 9 8 7 24 24 O 1.21687 * 125.16331 * 180.02562 * 23 9 8 25 25 H 1.09002 * 109.46980 * 89.99904 * 1 2 3 26 26 H 1.08994 * 109.47466 * 210.00028 * 1 2 3 27 27 H 1.08998 * 109.47295 * 330.00730 * 1 2 3 28 28 H 1.07998 * 120.07690 * 0.31505 * 4 3 2 29 29 H 1.08001 * 119.86087 * 180.24065 * 5 4 3 30 30 H 1.08008 * 119.85606 * 179.75209 * 6 5 4 31 31 H 1.08007 * 120.07483 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.46583 * 209.99522 * 10 9 8 33 33 H 1.09004 * 109.47253 * 329.99374 * 10 9 8 34 34 H 1.09000 * 109.47125 * 300.00119 * 11 10 9 35 35 H 1.09004 * 109.47030 * 59.99752 * 11 10 9 36 36 H 0.97001 * 120.00368 * 359.97438 * 14 12 11 37 37 H 0.97003 * 119.99184 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1295 0.0000 4 6 2.0192 2.4912 -0.0057 5 6 3.0662 3.3918 -0.0008 6 6 4.3751 2.9406 -0.0004 7 6 4.6448 1.5862 0.0007 8 6 3.6002 0.6743 0.0008 9 7 3.5462 -0.7175 0.0012 10 6 4.7000 -1.6202 0.0024 11 6 5.1007 -1.9338 1.4453 12 6 6.2873 -2.8629 1.4465 13 8 6.7656 -3.2370 0.3966 14 7 6.8168 -3.2781 2.6142 15 6 7.8966 -4.1230 2.6153 16 1 8.3225 -4.4560 1.6804 17 6 8.4430 -4.5507 3.8191 18 7 7.9249 -4.1449 4.9566 19 14 9.9137 -5.7023 3.8206 20 1 10.3046 -6.0077 2.4209 21 1 11.0505 -5.0525 4.5209 22 1 9.5555 -6.9618 4.5211 23 6 2.2529 -1.0918 0.0005 24 8 1.8563 -2.2422 0.0011 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 0.9995 2.8469 -0.0064 29 1 2.8631 4.4525 -0.0014 30 1 5.1887 3.6509 -0.0006 31 1 5.6672 1.2379 0.0015 32 1 4.4381 -2.5452 -0.5112 33 1 5.5350 -1.1433 -0.5111 34 1 5.3626 -1.0088 1.9589 35 1 4.2658 -2.4107 1.9588 36 1 6.4345 -2.9787 3.4539 37 1 8.3066 -4.4432 5.7971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195454030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:09 Heat of formation + Delta-G solvation = -10.370335 kcal Electronic energy + Delta-G solvation = -22213.450581 eV Core-core repulsion = 18763.616064 eV Total energy + Delta-G solvation = -3449.834517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.51389 -38.45735 -38.26712 -35.93219 -35.89066 -34.02033 -31.74899 -31.15507 -30.60056 -28.93515 -27.57762 -25.31547 -23.54312 -22.53217 -22.40652 -20.40782 -19.18779 -18.02968 -17.90255 -17.52256 -16.61074 -16.07147 -15.95468 -14.98161 -14.76039 -14.49435 -14.32910 -14.25264 -14.09607 -13.92656 -13.69382 -13.06903 -12.69937 -12.60423 -12.45439 -12.33460 -11.97520 -11.56640 -11.28178 -11.14189 -10.81224 -10.61105 -10.49040 -10.39657 -10.35706 -10.23699 -9.56655 -8.58307 -8.42532 -8.01613 -7.83756 -6.44940 -3.86209 1.06736 1.23855 2.09991 2.91973 3.14695 3.14798 3.25939 3.33341 3.57094 3.84488 4.15668 4.34521 4.57780 4.75440 4.88735 5.01586 5.08262 5.08591 5.15524 5.23945 5.28577 5.34376 5.36080 5.50517 5.62369 5.77214 5.88780 6.08096 6.20164 6.28331 6.32472 6.34142 6.45345 6.53053 6.74308 7.29050 7.52669 8.01258 8.20010 8.54688 9.12893 9.49107 9.98854 10.72566 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.003488 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.527646 B = 8026.365278 C = 8604.160458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.546 5.546 3 C 0.085 3.915 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.111 4.111 7 C -0.102 4.102 8 C 0.098 3.902 9 N -0.535 5.535 10 C 0.152 3.848 11 C -0.147 4.147 12 C 0.444 3.556 13 O -0.598 6.598 14 N -0.557 5.557 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.023 3.977 18 N -0.899 5.899 19 Si 0.931 3.069 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.677 3.323 24 O -0.550 6.550 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.394 0.606 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 16.994 -7.048 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.268 5.268 3 C -0.016 4.016 4 C -0.129 4.129 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.124 4.124 8 C -0.004 4.004 9 N -0.256 5.256 10 C 0.031 3.969 11 C -0.189 4.189 12 C 0.230 3.770 13 O -0.484 6.484 14 N -0.192 5.192 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.179 4.179 18 N -0.540 5.540 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C 0.380 3.620 24 O -0.426 6.426 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.227 0.773 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.605 15.699 -7.546 21.501 hybrid contribution 0.406 -0.398 0.776 0.962 sum -12.199 15.301 -6.770 20.707 Atomic orbital electron populations 1.21689 0.75129 1.04171 1.02909 1.45036 1.07072 1.04679 1.70056 1.18102 0.88247 0.89282 1.05960 1.19993 1.00070 0.88488 1.04353 1.20821 0.91955 0.99189 1.01580 1.20868 0.96986 0.94274 1.00941 1.20202 0.97638 0.91744 1.02776 1.18166 0.94112 0.83606 1.04552 1.45444 1.06968 1.04747 1.68395 1.21352 0.84574 0.93422 0.97552 1.21818 0.99050 1.00686 0.97310 1.19570 0.86554 0.85995 0.84908 1.90527 1.64860 1.61776 1.31280 1.41888 1.28600 1.42039 1.06668 1.19794 1.06359 1.22470 0.94531 0.87706 1.25299 0.99439 0.98500 0.94641 1.69629 1.41729 1.45017 0.97607 0.85781 0.80395 0.79422 0.78638 1.19138 1.20689 1.20681 1.16020 0.80794 0.84553 0.80664 1.91048 1.76532 1.16792 1.58202 0.91480 0.89502 0.90077 0.85578 0.85214 0.85040 0.84892 0.88066 0.88457 0.90019 0.89859 0.77301 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.00 59.85 0.66 1.56 16 2 N -0.55 -7.12 3.18 -126.33 -0.40 -7.53 16 3 C 0.09 1.03 6.83 -83.80 -0.57 0.45 16 4 C -0.11 -0.95 10.02 -39.48 -0.40 -1.35 16 5 C -0.12 -0.90 10.03 -39.55 -0.40 -1.30 16 6 C -0.11 -0.96 10.03 -39.56 -0.40 -1.36 16 7 C -0.10 -1.14 10.02 -39.48 -0.40 -1.53 16 8 C 0.10 1.31 6.83 -83.80 -0.57 0.73 16 9 N -0.54 -8.45 2.78 -118.90 -0.33 -8.78 16 10 C 0.15 2.59 5.26 -4.04 -0.02 2.57 16 11 C -0.15 -2.72 6.02 -27.88 -0.17 -2.89 16 12 C 0.44 10.58 7.78 -10.99 -0.09 10.50 16 13 O -0.60 -16.05 15.56 5.55 0.09 -15.96 16 14 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 15 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 16 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 17 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 18 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 19 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.68 11.37 8.45 -87.17 -0.74 10.63 16 24 O -0.55 -11.04 17.48 5.20 0.09 -10.94 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 30 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.10 1.91 7.99 -51.93 -0.41 1.49 16 33 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -34.16 327.97 -7.76 -41.92 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.47 Total: 8.69 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.32 Total: 9.93 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.07 Total: -54.64 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: 0.18 Total: -26.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.16 -7.76 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195454030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.555 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds