Wall clock time and date at job start Tue Mar 31 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.37149 * 2 1 4 4 C 1.50688 * 109.37560 * 240.35320 * 2 1 3 5 5 O 1.21296 * 120.31519 * 24.80440 * 4 2 1 6 6 N 1.35148 * 119.37216 * 204.82968 * 4 2 1 7 7 C 1.40363 * 118.50923 * 0.73106 * 6 4 2 8 8 C 1.38016 * 120.31766 * 198.27561 * 7 6 4 9 9 C 1.39884 * 119.76456 * 179.77772 * 8 7 6 10 10 C 1.47420 * 120.08896 * 179.97438 * 9 8 7 11 11 O 1.21636 * 119.99575 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00268 * 179.97438 * 10 9 8 13 13 C 1.36898 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00170 * 359.97438 * 13 12 10 15 15 C 1.39024 * 120.00253 * 180.02562 * 13 12 10 16 16 N 1.31389 * 119.99499 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00050 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47006 * 89.99865 * 17 15 13 19 19 H 1.48494 * 109.46791 * 209.99428 * 17 15 13 20 20 H 1.48499 * 109.47195 * 329.99658 * 17 15 13 21 21 C 1.39840 * 119.82145 * 359.97438 * 9 8 7 22 22 C 1.37671 * 120.14798 * 0.32039 * 21 9 8 23 23 C 1.39126 * 120.17567 * 359.49303 * 22 21 9 24 24 N 1.39085 * 119.98169 * 180.10535 * 23 22 21 25 25 C 1.46898 * 110.99779 * 19.70938 * 24 23 22 26 26 H 1.09004 * 109.47058 * 300.23246 * 1 2 3 27 27 H 1.09004 * 109.47259 * 60.23055 * 1 2 3 28 28 H 1.09001 * 109.46852 * 180.23357 * 1 2 3 29 29 H 0.97002 * 120.74449 * 180.70271 * 6 4 2 30 30 H 1.08006 * 120.11330 * 359.79005 * 8 7 6 31 31 H 0.97005 * 119.99709 * 359.97438 * 12 10 9 32 32 H 0.97004 * 119.99466 * 180.02562 * 16 15 13 33 33 H 1.08004 * 119.92444 * 180.02562 * 21 9 8 34 34 H 1.07999 * 119.91038 * 179.75130 * 22 21 9 35 35 H 1.09002 * 109.47355 * 56.04570 * 25 24 23 36 36 H 1.08997 * 109.47176 * 176.05455 * 25 24 23 37 37 H 1.09009 * 109.47280 * 296.04492 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0300 -0.7032 -1.2354 5 8 1.3364 -0.7631 -2.2288 6 7 3.2582 -1.2669 -1.2261 7 6 4.0222 -1.1890 -0.0512 8 6 5.3856 -1.3996 -0.0914 9 6 6.1365 -1.3145 1.0857 10 6 7.5931 -1.5387 1.0511 11 8 8.1435 -1.7985 -0.0021 12 7 8.3149 -1.4558 2.1862 13 6 9.6676 -1.6635 2.1539 14 1 10.1564 -1.8942 1.2189 15 6 10.4122 -1.5785 3.3249 16 7 9.8174 -1.2984 4.4625 17 14 12.2579 -1.8626 3.2809 18 1 12.9518 -0.5720 3.0399 19 1 12.7026 -2.4287 4.5797 20 1 12.5865 -2.8130 2.1882 21 6 5.5016 -1.0163 2.2955 22 6 4.1404 -0.8132 2.3304 23 6 3.3912 -0.8932 1.1608 24 7 2.0166 -0.6851 1.2003 25 6 1.6291 0.0426 2.4161 26 1 -0.3633 0.5175 0.8879 27 1 -0.3634 0.5103 -0.8921 28 1 -0.3633 -1.0277 0.0042 29 1 3.6039 -1.7156 -2.0135 30 1 5.8710 -1.6291 -1.0286 31 1 7.8760 -1.2483 3.0260 32 1 10.3370 -1.2387 5.2795 33 1 6.0798 -0.9498 3.2053 34 1 3.6535 -0.5870 3.2674 35 1 2.1830 0.9799 2.4706 36 1 0.5601 0.2533 2.3882 37 1 1.8567 -0.5654 3.2917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267333406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:59 Heat of formation + Delta-G solvation = -52.799170 kcal Electronic energy + Delta-G solvation = -22433.998209 eV Core-core repulsion = 18982.323839 eV Total energy + Delta-G solvation = -3451.674369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.52350 -40.57357 -39.53633 -37.83959 -36.25399 -36.09095 -33.44062 -32.80299 -30.87733 -30.07321 -28.31225 -26.87014 -24.57867 -24.26446 -23.22826 -21.86134 -20.28639 -19.90864 -19.32431 -18.81121 -17.78467 -17.37533 -16.95816 -16.77887 -16.00251 -15.67502 -15.54659 -15.42802 -15.14838 -15.12343 -14.95213 -14.41843 -13.94279 -13.59817 -13.55529 -13.53279 -12.95941 -12.90005 -12.86522 -12.52558 -12.37230 -12.12442 -12.05745 -11.81104 -11.57588 -11.32036 -10.98572 -10.52286 -10.10196 -9.57848 -8.66417 -8.54816 -5.98700 -0.19527 0.17759 1.20685 1.41798 1.42921 1.55563 1.82771 2.03132 2.27803 2.49398 2.79988 2.98097 3.16141 3.30173 3.54891 3.80261 3.95909 4.10684 4.15398 4.22428 4.29002 4.48804 4.57139 4.71911 4.74010 4.77689 4.83738 5.03323 5.14703 5.23784 5.36353 5.39981 5.45144 5.52039 5.69249 5.83852 5.95996 6.12108 6.51675 6.76941 7.03976 7.45077 8.02092 8.62245 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034673 B = 0.003559 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.349969 B = 7865.635921 C = 8615.599401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.067 3.933 3 H 0.100 0.900 4 C 0.522 3.478 5 O -0.548 6.548 6 N -0.657 5.657 7 C 0.103 3.897 8 C -0.081 4.081 9 C -0.121 4.121 10 C 0.465 3.535 11 O -0.641 6.641 12 N -0.549 5.549 13 C -0.338 4.338 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.907 5.907 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.267 1.267 20 H -0.273 1.273 21 C -0.083 4.083 22 C -0.123 4.123 23 C 0.097 3.903 24 N -0.486 5.486 25 C 0.009 3.991 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.417 0.583 30 H 0.127 0.873 31 H 0.400 0.600 32 H 0.283 0.717 33 H 0.136 0.864 34 H 0.176 0.824 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 5.126 1.225 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 H 0.117 0.883 4 C 0.310 3.690 5 O -0.424 6.424 6 N -0.303 5.303 7 C 0.006 3.994 8 C -0.103 4.103 9 C -0.126 4.126 10 C 0.255 3.745 11 O -0.532 6.532 12 N -0.183 5.183 13 C -0.467 4.467 14 H 0.100 0.900 15 C -0.208 4.208 16 N -0.547 5.547 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.191 1.191 20 H -0.198 1.198 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.005 4.005 24 N -0.201 5.201 25 C -0.135 4.135 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.257 0.743 30 H 0.145 0.855 31 H 0.236 0.764 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.193 0.807 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.911 4.618 0.345 19.469 hybrid contribution 1.723 0.058 -0.299 1.749 sum -17.188 4.676 0.047 17.813 Atomic orbital electron populations 1.21762 0.88592 1.03741 1.04435 1.21889 0.99879 0.97020 0.85469 0.88284 1.21216 0.80101 0.77534 0.90130 1.90742 1.56178 1.59338 1.36171 1.43793 1.16692 1.55569 1.14265 1.17265 0.90029 1.06509 0.85582 1.20499 0.90860 1.00421 0.98544 1.19710 0.92215 1.05693 0.95026 1.18375 0.87567 0.84451 0.84082 1.90559 1.73549 1.57260 1.31794 1.41844 1.07742 1.59782 1.08969 1.19774 0.83670 1.47179 0.96089 0.89988 1.26119 1.05105 0.95759 0.93817 1.69636 1.38845 1.46731 0.99454 0.84881 0.76275 0.78827 0.78105 1.19398 1.19138 1.19778 1.21324 0.95379 0.97145 0.96493 1.21107 0.92203 1.03059 0.98065 1.18832 0.88409 1.01159 0.92125 1.58346 1.08499 1.48263 1.04989 1.22929 1.03741 0.97322 0.89550 0.88007 0.90621 0.92074 0.74336 0.85496 0.76424 0.90732 0.84635 0.80661 0.92396 0.87544 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.63 71.98 0.62 -1.12 16 2 C 0.07 1.23 2.55 44.24 0.11 1.34 16 3 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 4 C 0.52 13.32 7.66 87.59 0.67 13.99 16 5 O -0.55 -16.64 16.95 -3.08 -0.05 -16.69 16 6 N -0.66 -17.17 5.49 -302.62 -1.66 -18.83 16 7 C 0.10 2.92 6.49 38.10 0.25 3.17 16 8 C -0.08 -2.79 9.48 22.62 0.21 -2.57 16 9 C -0.12 -4.69 5.88 -20.07 -0.12 -4.80 16 10 C 0.47 23.37 7.71 86.66 0.67 24.03 16 11 O -0.64 -37.11 15.91 -4.14 -0.07 -37.17 16 12 N -0.55 -28.37 5.23 -309.99 -1.62 -29.99 16 13 C -0.34 -19.01 9.68 84.09 0.81 -18.20 16 14 H 0.08 4.93 7.15 -2.91 -0.02 4.91 16 15 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 16 N -0.91 -46.85 13.05 21.68 0.28 -46.57 16 17 Si 1.00 41.52 29.55 68.60 2.03 43.55 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C -0.08 -2.53 9.52 22.52 0.21 -2.31 16 22 C -0.12 -2.81 8.93 22.35 0.20 -2.61 16 23 C 0.10 2.31 5.91 38.58 0.23 2.54 16 24 N -0.49 -8.90 4.65 -700.63 -3.26 -12.16 16 25 C 0.01 0.09 8.30 127.69 1.06 1.15 16 26 H 0.10 0.74 6.30 -2.38 -0.02 0.73 16 27 H 0.07 1.10 7.86 -2.38 -0.02 1.09 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.42 10.13 8.90 -92.71 -0.83 9.31 16 30 H 0.13 4.62 7.65 -2.91 -0.02 4.60 16 31 H 0.40 19.11 5.91 -92.70 -0.55 18.57 16 32 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.14 4.07 6.38 -2.91 -0.02 4.05 16 34 H 0.18 2.61 5.95 -2.91 -0.02 2.59 16 35 H 0.06 0.53 7.98 -2.39 -0.02 0.51 16 36 H 0.11 0.61 6.01 -2.39 -0.01 0.60 16 37 H 0.10 0.83 6.77 -2.38 -0.02 0.81 16 Total: -1.00 -71.61 309.86 0.83 -70.78 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.22 Total: 32.34 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.40 Total: 14.74 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -6.26 Total: -107.54 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.12 Total: -53.87 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -71.61 0.83 -70.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267333406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.985 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds