Wall clock time and date at job start Tue Mar 31 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.27362 * 2 1 4 4 C 1.50692 * 109.37452 * 119.69865 * 2 1 3 5 5 O 1.21297 * 120.31635 * 265.21739 * 4 2 1 6 6 N 1.35145 * 119.37489 * 85.48404 * 4 2 1 7 7 C 1.40362 * 118.52361 * 0.21735 * 6 4 2 8 8 C 1.38009 * 120.38869 * 198.56401 * 7 6 4 9 9 C 1.39888 * 119.76273 * 179.97438 * 8 7 6 10 10 C 1.47416 * 120.08848 * 180.02562 * 9 8 7 11 11 O 1.21629 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.36905 * 120.00027 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00167 * 359.97438 * 13 12 10 15 15 C 1.39021 * 120.00116 * 179.97438 * 13 12 10 16 16 N 1.31390 * 119.99831 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47316 * 89.99919 * 17 15 13 19 19 H 1.48501 * 109.46987 * 209.99907 * 17 15 13 20 20 H 1.48503 * 109.47428 * 329.99780 * 17 15 13 21 21 C 1.39847 * 119.82267 * 359.97438 * 9 8 7 22 22 C 1.37662 * 120.14311 * 0.06438 * 21 9 8 23 23 C 1.39130 * 120.18061 * 0.02562 * 22 21 9 24 24 N 1.39084 * 119.98277 * 179.84154 * 23 22 21 25 25 C 1.46901 * 110.99918 * 19.40459 * 24 23 22 26 26 H 1.09002 * 109.46863 * 300.29963 * 1 2 3 27 27 H 1.08996 * 109.47326 * 60.29707 * 1 2 3 28 28 H 1.09002 * 109.46918 * 180.30319 * 1 2 3 29 29 H 0.97002 * 120.73974 * 180.45917 * 6 4 2 30 30 H 1.07998 * 120.12434 * 359.91147 * 8 7 6 31 31 H 0.97004 * 120.00231 * 359.97438 * 12 10 9 32 32 H 0.97001 * 119.99375 * 180.02562 * 16 15 13 33 33 H 1.07996 * 119.92354 * 180.02562 * 21 9 8 34 34 H 1.08007 * 119.91061 * 180.02562 * 22 21 9 35 35 H 1.09002 * 109.46814 * 177.51902 * 25 24 23 36 36 H 1.09003 * 109.47091 * 297.51442 * 25 24 23 37 37 H 1.09000 * 109.47414 * 57.51968 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8898 1.0289 0.0000 4 6 2.0300 -0.7043 1.2348 5 8 2.3154 -0.0697 2.2284 6 7 2.1624 -2.0492 1.2231 7 6 1.8310 -2.7451 0.0501 8 6 1.5800 -4.1016 0.0904 9 6 1.2503 -4.7821 -1.0865 10 6 0.9802 -6.2309 -1.0516 11 8 1.0443 -6.8363 0.0014 12 7 0.6633 -6.8848 -2.1867 13 6 0.4130 -8.2304 -2.1544 14 1 0.4698 -8.7680 -1.2194 15 6 0.0855 -8.9048 -3.3252 16 7 -0.1552 -10.1961 -3.2940 17 14 -0.0122 -7.9751 -4.9424 18 1 1.3185 -7.9872 -5.6015 19 1 -1.0095 -8.6272 -5.8287 20 1 -0.4233 -6.5719 -4.6828 21 6 1.1767 -4.0841 -2.2961 22 6 1.4289 -2.7312 -2.3300 23 6 1.7589 -2.0517 -1.1616 24 7 2.0162 -0.6855 -1.2012 25 6 1.4562 -0.0793 -2.4165 26 1 -0.3633 0.5185 0.8873 27 1 -0.3634 0.5092 -0.8926 28 1 -0.3633 -1.0277 0.0054 29 1 2.4761 -2.5234 2.0091 30 1 1.6388 -4.6361 1.0270 31 1 0.6126 -6.4020 -3.0266 32 1 -0.3833 -10.6666 -4.1110 33 1 0.9219 -4.6077 -3.2056 34 1 1.3706 -2.1958 -3.2662 35 1 1.6333 0.9961 -2.4008 36 1 1.9361 -0.5137 -3.2935 37 1 0.3839 -0.2704 -2.4569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267333408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:02 Heat of formation + Delta-G solvation = -21.697280 kcal Electronic energy + Delta-G solvation = -22702.147563 eV Core-core repulsion = 19251.821873 eV Total energy + Delta-G solvation = -3450.325690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66964 -39.20220 -38.31158 -36.78779 -35.15407 -34.19460 -32.00363 -31.62370 -29.86654 -29.17304 -27.34079 -25.31634 -23.77719 -23.22909 -22.09600 -20.48098 -19.09708 -18.81628 -17.89779 -17.74531 -16.20413 -16.13155 -15.70339 -15.26976 -15.17099 -14.77485 -14.27140 -14.24087 -13.88359 -13.86451 -13.43897 -13.18774 -12.91992 -12.74338 -12.66050 -12.38697 -12.26054 -12.11179 -11.80947 -11.35711 -11.15333 -10.73512 -10.68668 -10.32854 -10.12381 -10.04330 -9.70695 -8.72614 -8.50533 -8.35398 -7.65281 -6.51242 -3.94756 0.93979 1.27568 2.22750 2.82623 2.90876 2.96337 3.04659 3.24446 3.48512 3.93523 3.94373 4.25836 4.43723 4.45897 4.59106 4.65248 4.88754 5.04243 5.11413 5.14125 5.16640 5.26882 5.35559 5.41354 5.46899 5.52406 5.65979 5.75791 5.86865 6.20933 6.44929 6.47215 6.55614 6.60268 6.82797 7.12286 7.39159 7.76946 7.98769 8.41904 8.77088 9.23386 9.68749 10.60408 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004177 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.256558 B = 6701.318888 C = 7496.322540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.127 0.873 4 C 0.531 3.469 5 O -0.525 6.525 6 N -0.656 5.656 7 C 0.111 3.889 8 C -0.077 4.077 9 C -0.089 4.089 10 C 0.476 3.524 11 O -0.580 6.580 12 N -0.567 5.567 13 C -0.299 4.299 14 H 0.125 0.875 15 C 0.043 3.957 16 N -0.865 5.865 17 Si 0.878 3.122 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.267 1.267 21 C -0.098 4.098 22 C -0.136 4.136 23 C 0.080 3.920 24 N -0.481 5.481 25 C 0.019 3.981 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.416 0.584 30 H 0.143 0.857 31 H 0.372 0.628 32 H 0.278 0.722 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 20.894 -1.845 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.042 4.042 3 H 0.144 0.856 4 C 0.318 3.682 5 O -0.399 6.399 6 N -0.302 5.302 7 C 0.015 3.985 8 C -0.099 4.099 9 C -0.094 4.094 10 C 0.264 3.736 11 O -0.465 6.465 12 N -0.204 5.204 13 C -0.428 4.428 14 H 0.142 0.858 15 C -0.162 4.162 16 N -0.503 5.503 17 Si 0.704 3.296 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.192 1.192 21 C -0.118 4.118 22 C -0.157 4.157 23 C -0.021 4.021 24 N -0.196 5.196 25 C -0.127 4.127 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.255 0.745 30 H 0.161 0.839 31 H 0.206 0.794 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.770 20.874 -0.838 20.965 hybrid contribution -0.657 0.129 -1.108 1.294 sum 1.113 21.003 -1.946 21.122 Atomic orbital electron populations 1.22423 0.93718 1.03974 1.04101 1.22001 0.95786 0.99521 0.86936 0.85576 1.20559 0.76467 0.81877 0.89292 1.90776 1.48788 1.65364 1.35013 1.43719 1.64751 1.07118 1.14607 1.17313 1.04695 0.91981 0.84543 1.20644 0.98919 0.90796 0.99574 1.20066 1.01493 0.94970 0.92884 1.17415 0.85738 0.85658 0.84763 1.90655 1.57744 1.68197 1.29916 1.42206 1.60579 1.09553 1.08050 1.19560 1.43227 0.81511 0.98469 0.85785 1.25131 0.97070 0.95666 0.98323 1.69610 1.43959 1.07418 1.29283 0.86685 0.79368 0.79861 0.83736 1.19117 1.19724 1.19229 1.21176 0.99379 0.93776 0.97510 1.20790 1.03422 0.94713 0.96763 1.18538 1.01859 0.88961 0.92701 1.58634 1.56412 1.01082 1.03502 1.22619 0.98759 1.00217 0.91142 0.90595 0.90272 0.91313 0.74501 0.83944 0.79371 0.91160 0.85576 0.84663 0.90316 0.89722 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.48 37.16 0.31 -1.24 16 2 C 0.07 0.67 2.92 -69.03 -0.20 0.47 16 3 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.53 6.84 7.16 -10.82 -0.08 6.76 16 5 O -0.52 -8.13 17.96 5.54 0.10 -8.03 16 6 N -0.66 -8.26 5.49 -9.66 -0.05 -8.31 16 7 C 0.11 1.52 6.17 -83.45 -0.52 1.00 16 8 C -0.08 -1.22 9.48 -39.05 -0.37 -1.59 16 9 C -0.09 -1.57 5.88 -104.94 -0.62 -2.19 16 10 C 0.48 10.88 7.71 -12.52 -0.10 10.78 16 11 O -0.58 -15.50 15.91 5.25 0.08 -15.42 16 12 N -0.57 -13.21 5.03 -11.96 -0.06 -13.27 16 13 C -0.30 -8.15 10.16 -15.00 -0.15 -8.31 16 14 H 0.12 3.86 7.38 -52.48 -0.39 3.48 16 15 C 0.04 1.13 5.50 -17.45 -0.10 1.04 16 16 N -0.86 -24.08 13.96 55.50 0.77 -23.30 16 17 Si 0.88 18.21 27.74 -169.99 -4.71 13.49 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -4.96 6.52 56.52 0.37 -4.59 16 21 C -0.10 -1.41 9.52 -39.19 -0.37 -1.79 16 22 C -0.14 -1.61 8.95 -39.46 -0.35 -1.96 16 23 C 0.08 0.99 5.07 -83.66 -0.42 0.56 16 24 N -0.48 -4.93 4.85 -172.74 -0.84 -5.77 16 25 C 0.02 0.13 7.67 60.07 0.46 0.59 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.51 6.46 -51.93 -0.34 0.17 16 28 H 0.07 0.70 7.29 -51.93 -0.38 0.32 16 29 H 0.42 4.70 8.90 -40.82 -0.36 4.33 16 30 H 0.14 2.29 7.65 -52.49 -0.40 1.89 16 31 H 0.37 7.52 3.77 -40.82 -0.15 7.36 16 32 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.13 1.70 6.38 -52.49 -0.34 1.37 16 34 H 0.14 1.19 5.91 -52.48 -0.31 0.88 16 35 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 36 H 0.08 0.53 6.68 -51.93 -0.35 0.18 16 37 H 0.05 0.32 6.57 -51.93 -0.34 -0.02 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -32.77 306.05 -6.39 -39.15 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.79 Total: 12.71 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.50 Total: 4.13 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.18 Total: -50.66 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.18 Total: -23.45 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.71 Total: 13.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.77 -6.39 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267333408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.456 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds