Wall clock time and date at job start Tue Mar 31 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.27362 * 2 1 4 4 C 1.50692 * 109.37452 * 119.69865 * 2 1 3 5 5 O 1.21297 * 120.31635 * 265.21739 * 4 2 1 6 6 N 1.35145 * 119.37489 * 85.48404 * 4 2 1 7 7 C 1.40362 * 118.52361 * 0.21735 * 6 4 2 8 8 C 1.38009 * 120.38869 * 198.56401 * 7 6 4 9 9 C 1.39888 * 119.76273 * 179.97438 * 8 7 6 10 10 C 1.47416 * 120.08848 * 180.02562 * 9 8 7 11 11 O 1.21629 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.36905 * 120.00027 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00167 * 359.97438 * 13 12 10 15 15 C 1.39021 * 120.00116 * 179.97438 * 13 12 10 16 16 N 1.31390 * 119.99831 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47316 * 89.99919 * 17 15 13 19 19 H 1.48501 * 109.46987 * 209.99907 * 17 15 13 20 20 H 1.48503 * 109.47428 * 329.99780 * 17 15 13 21 21 C 1.39847 * 119.82267 * 359.97438 * 9 8 7 22 22 C 1.37662 * 120.14311 * 0.06438 * 21 9 8 23 23 C 1.39130 * 120.18061 * 0.02562 * 22 21 9 24 24 N 1.39084 * 119.98277 * 179.84154 * 23 22 21 25 25 C 1.46901 * 110.99918 * 19.40459 * 24 23 22 26 26 H 1.09002 * 109.46863 * 300.29963 * 1 2 3 27 27 H 1.08996 * 109.47326 * 60.29707 * 1 2 3 28 28 H 1.09002 * 109.46918 * 180.30319 * 1 2 3 29 29 H 0.97002 * 120.73974 * 180.45917 * 6 4 2 30 30 H 1.07998 * 120.12434 * 359.91147 * 8 7 6 31 31 H 0.97004 * 120.00231 * 359.97438 * 12 10 9 32 32 H 0.97001 * 119.99375 * 180.02562 * 16 15 13 33 33 H 1.07996 * 119.92354 * 180.02562 * 21 9 8 34 34 H 1.08007 * 119.91061 * 180.02562 * 22 21 9 35 35 H 1.09002 * 109.46814 * 177.51902 * 25 24 23 36 36 H 1.09003 * 109.47091 * 297.51442 * 25 24 23 37 37 H 1.09000 * 109.47414 * 57.51968 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8898 1.0289 0.0000 4 6 2.0300 -0.7043 1.2348 5 8 2.3154 -0.0697 2.2284 6 7 2.1624 -2.0492 1.2231 7 6 1.8310 -2.7451 0.0501 8 6 1.5800 -4.1016 0.0904 9 6 1.2503 -4.7821 -1.0865 10 6 0.9802 -6.2309 -1.0516 11 8 1.0443 -6.8363 0.0014 12 7 0.6633 -6.8848 -2.1867 13 6 0.4130 -8.2304 -2.1544 14 1 0.4698 -8.7680 -1.2194 15 6 0.0855 -8.9048 -3.3252 16 7 -0.1552 -10.1961 -3.2940 17 14 -0.0122 -7.9751 -4.9424 18 1 1.3185 -7.9872 -5.6015 19 1 -1.0095 -8.6272 -5.8287 20 1 -0.4233 -6.5719 -4.6828 21 6 1.1767 -4.0841 -2.2961 22 6 1.4289 -2.7312 -2.3300 23 6 1.7589 -2.0517 -1.1616 24 7 2.0162 -0.6855 -1.2012 25 6 1.4562 -0.0793 -2.4165 26 1 -0.3633 0.5185 0.8873 27 1 -0.3634 0.5092 -0.8926 28 1 -0.3633 -1.0277 0.0054 29 1 2.4761 -2.5234 2.0091 30 1 1.6388 -4.6361 1.0270 31 1 0.6126 -6.4020 -3.0266 32 1 -0.3833 -10.6666 -4.1110 33 1 0.9219 -4.6077 -3.2056 34 1 1.3706 -2.1958 -3.2662 35 1 1.6333 0.9961 -2.4008 36 1 1.9361 -0.5137 -3.2935 37 1 0.3839 -0.2704 -2.4569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267333408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:01 Heat of formation + Delta-G solvation = -48.313197 kcal Electronic energy + Delta-G solvation = -22703.301716 eV Core-core repulsion = 19251.821873 eV Total energy + Delta-G solvation = -3451.479843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.65233 -40.67818 -39.60638 -37.88449 -36.28854 -36.12457 -33.87115 -32.64348 -30.95610 -30.20129 -28.20840 -26.92546 -24.88119 -24.27771 -23.16093 -21.96983 -20.88646 -19.87436 -19.26491 -18.83619 -17.53301 -17.08155 -16.95679 -16.78815 -16.09975 -15.93907 -15.63077 -15.39278 -15.33792 -15.13074 -14.77783 -14.35703 -14.23332 -14.02266 -13.77322 -13.61474 -13.04300 -12.99799 -12.85739 -12.60696 -12.46491 -12.13671 -11.97311 -11.81559 -11.57605 -11.33212 -10.95157 -10.62898 -10.32785 -9.59457 -8.66554 -8.47489 -6.05696 -0.22495 0.16136 1.20112 1.29232 1.38426 1.44913 1.83422 1.95965 2.20825 2.51391 2.77763 2.79762 3.04893 3.23154 3.53330 3.78821 3.91655 4.00703 4.11061 4.16324 4.23493 4.46721 4.56438 4.57980 4.68167 4.72687 4.77236 5.01825 5.02497 5.15074 5.34592 5.40032 5.47406 5.54315 5.68343 5.84412 5.90910 6.11554 6.51150 6.75693 6.78783 7.29112 7.85437 8.69243 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004177 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.256558 B = 6701.318888 C = 7496.322540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 H 0.149 0.851 4 C 0.525 3.475 5 O -0.556 6.556 6 N -0.657 5.657 7 C 0.105 3.895 8 C -0.080 4.080 9 C -0.125 4.125 10 C 0.481 3.519 11 O -0.631 6.631 12 N -0.568 5.568 13 C -0.333 4.333 14 H 0.058 0.942 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.958 3.042 18 H -0.251 1.251 19 H -0.269 1.269 20 H -0.225 1.225 21 C -0.083 4.083 22 C -0.124 4.124 23 C 0.104 3.896 24 N -0.486 5.486 25 C 0.009 3.991 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.417 0.583 30 H 0.125 0.875 31 H 0.391 0.609 32 H 0.283 0.717 33 H 0.143 0.857 34 H 0.182 0.818 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 26.002 -5.399 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.038 4.038 3 H 0.167 0.833 4 C 0.313 3.687 5 O -0.433 6.433 6 N -0.302 5.302 7 C 0.008 3.992 8 C -0.102 4.102 9 C -0.130 4.130 10 C 0.271 3.729 11 O -0.519 6.519 12 N -0.207 5.207 13 C -0.462 4.462 14 H 0.076 0.924 15 C -0.210 4.210 16 N -0.562 5.562 17 Si 0.776 3.224 18 H -0.175 1.175 19 H -0.194 1.194 20 H -0.148 1.148 21 C -0.103 4.103 22 C -0.145 4.145 23 C 0.002 3.998 24 N -0.200 5.200 25 C -0.136 4.136 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.069 0.931 29 H 0.256 0.744 30 H 0.142 0.858 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.160 0.840 34 H 0.199 0.801 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.704 26.034 -4.397 26.457 hybrid contribution -0.531 -1.226 0.208 1.352 sum 1.173 24.808 -4.190 25.186 Atomic orbital electron populations 1.22427 0.92221 1.03267 1.05788 1.22104 0.96770 0.99836 0.85101 0.83345 1.21232 0.75727 0.81600 0.90105 1.90763 1.50253 1.65787 1.36516 1.43799 1.64447 1.07443 1.14561 1.17257 1.05190 0.91136 0.85664 1.20501 0.99257 0.91916 0.98573 1.19607 1.06240 0.91789 0.95322 1.18375 0.82927 0.87850 0.83706 1.90613 1.59119 1.70237 1.31962 1.41891 1.61710 1.08035 1.09044 1.19073 1.46708 0.83517 0.96924 0.92370 1.26199 0.95336 0.96574 1.02908 1.69782 1.45513 1.09853 1.31007 0.85476 0.80113 0.80161 0.76619 1.17520 1.19402 1.14817 1.21348 0.97806 0.94846 0.96318 1.21177 1.01628 0.93468 0.98226 1.18845 0.98555 0.90374 0.92060 1.58596 1.56492 0.99825 1.05097 1.22901 0.99577 1.01678 0.89421 0.90398 0.87238 0.93115 0.74430 0.85755 0.77193 0.90709 0.83955 0.80122 0.87913 0.88286 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.48 71.98 0.61 -1.67 16 2 C 0.07 1.13 2.92 44.23 0.13 1.26 16 3 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.52 12.54 7.16 87.60 0.63 13.17 16 5 O -0.56 -16.63 17.96 -3.08 -0.06 -16.69 16 6 N -0.66 -16.02 5.49 -302.64 -1.66 -17.68 16 7 C 0.10 2.69 6.17 38.10 0.24 2.92 16 8 C -0.08 -2.57 9.48 22.62 0.21 -2.35 16 9 C -0.12 -4.36 5.88 -20.07 -0.12 -4.48 16 10 C 0.48 22.99 7.71 86.66 0.67 23.66 16 11 O -0.63 -36.52 15.91 -4.12 -0.07 -36.59 16 12 N -0.57 -27.08 5.03 -309.98 -1.56 -28.64 16 13 C -0.33 -19.40 10.16 84.09 0.85 -18.54 16 14 H 0.06 4.04 7.38 -2.91 -0.02 4.02 16 15 C -0.01 -0.54 5.50 84.95 0.47 -0.07 16 16 N -0.92 -54.16 13.96 21.68 0.30 -53.86 16 17 Si 0.96 36.50 27.74 68.60 1.90 38.40 16 18 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.23 -6.98 6.52 99.48 0.65 -6.33 16 21 C -0.08 -2.10 9.52 22.52 0.21 -1.88 16 22 C -0.12 -2.26 8.95 22.35 0.20 -2.06 16 23 C 0.10 2.12 5.07 38.58 0.20 2.32 16 24 N -0.49 -7.43 4.85 -700.44 -3.40 -10.83 16 25 C 0.01 0.06 7.67 127.69 0.98 1.04 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 0.76 6.46 -2.39 -0.02 0.74 16 28 H 0.05 0.86 7.29 -2.39 -0.02 0.84 16 29 H 0.42 9.62 8.90 -92.71 -0.83 8.79 16 30 H 0.12 4.33 7.65 -2.91 -0.02 4.31 16 31 H 0.39 15.14 3.77 -92.71 -0.35 14.79 16 32 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.14 3.14 6.38 -2.91 -0.02 3.12 16 34 H 0.18 1.75 5.91 -2.91 -0.02 1.73 16 35 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 36 H 0.10 0.47 6.68 -2.39 -0.02 0.46 16 37 H 0.06 0.34 6.57 -2.39 -0.02 0.32 16 Total: -1.00 -80.80 306.05 0.65 -80.14 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.08 Total: 32.44 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 5.28 Total: 13.31 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -6.32 Total: -111.02 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.12 Total: -53.27 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 1.90 Total: 38.40 kcal Total: -80.80 0.65 -80.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267333408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds