Wall clock time and date at job start Tue Mar 31 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21580 * 119.99806 * 359.97438 * 13 12 2 15 15 C 1.47618 * 119.99866 * 179.97438 * 13 12 2 16 16 C 1.39860 * 120.01803 * 359.72877 * 15 13 12 17 17 C 1.37650 * 120.14766 * 179.73392 * 16 15 13 18 18 C 1.38970 * 120.04268 * 0.51920 * 17 16 15 19 19 N 1.38885 * 133.11545 * 179.75804 * 18 17 16 20 20 H 0.97005 * 125.75633 * 0.02562 * 19 18 17 21 21 C 1.34603 * 108.48668 * 180.02562 * 19 18 17 22 22 O 1.21672 * 125.14745 * 179.97438 * 21 19 18 23 23 N 1.34641 * 109.71194 * 359.97438 * 21 19 18 24 24 C 1.46496 * 125.87190 * 180.02562 * 23 21 19 25 25 C 1.39383 * 108.25857 * 0.02562 * 23 21 19 26 26 C 1.38251 * 133.22603 * 180.02562 * 25 23 21 27 27 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 29 29 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 32 32 H 1.07996 * 119.92668 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.97653 * 180.25317 * 17 16 15 34 34 H 1.09001 * 109.47238 * 269.97610 * 24 23 21 35 35 H 1.08998 * 109.46935 * 29.97561 * 24 23 21 36 36 H 1.08999 * 109.47163 * 149.97456 * 24 23 21 37 37 H 1.07999 * 120.13402 * 359.95133 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1616 2.4117 15 6 2.6386 -0.7142 3.5627 16 6 2.9654 -2.0727 3.5019 17 6 3.4292 -2.7230 4.6229 18 6 3.5636 -2.0332 5.8218 19 7 3.9893 -2.4074 7.0897 20 1 4.2849 -3.2940 7.3497 21 6 3.9224 -1.3324 7.8970 22 8 4.2252 -1.3214 9.0753 23 7 3.4697 -0.2710 7.2032 24 6 3.2620 1.0777 7.7361 25 6 3.2327 -0.6759 5.8907 26 6 2.7720 -0.0181 4.7654 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.9028 -0.5285 -4.4375 31 1 2.2491 -1.6317 1.1527 32 1 2.8574 -2.6117 2.5723 33 1 3.6846 -3.7711 4.5718 34 1 2.2450 1.1646 8.1187 35 1 3.9708 1.2626 8.5433 36 1 3.4155 1.8095 6.9430 37 1 2.5160 1.0298 4.8167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269744617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:05 Heat of formation + Delta-G solvation = -3.147939 kcal Electronic energy + Delta-G solvation = -22155.724071 eV Core-core repulsion = 18706.202740 eV Total energy + Delta-G solvation = -3449.521330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.73063 -39.58936 -38.05827 -36.00506 -35.34221 -35.02543 -32.47944 -30.73336 -30.53986 -28.89557 -27.69619 -25.24052 -23.93137 -22.73853 -21.80450 -21.14823 -19.90209 -18.60463 -18.12949 -17.07159 -16.82509 -16.31036 -16.00502 -15.54216 -15.33535 -14.65499 -14.31032 -14.28038 -14.11021 -13.83777 -13.27107 -13.17374 -13.04267 -12.87585 -12.72721 -12.22631 -11.87389 -11.43496 -11.38372 -11.13254 -10.90545 -10.84736 -10.69272 -10.21788 -9.77592 -9.33966 -9.27398 -8.79917 -8.70735 -8.28204 -8.05810 -6.24191 -4.27178 0.71891 1.03266 1.99236 2.61166 2.97627 2.99365 3.21485 3.33885 3.37757 3.78327 3.90837 4.21773 4.28975 4.50133 4.85981 4.90097 4.99211 5.03268 5.10842 5.11519 5.22228 5.31596 5.47828 5.77503 5.99269 6.15167 6.19729 6.26385 6.33241 6.36258 6.52127 6.53962 6.82111 6.94594 7.14420 7.21699 7.46546 7.90314 8.08796 8.45265 8.70724 8.82893 9.36275 10.87860 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003371 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.790472 B = 8305.040871 C = 8845.440873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.261 1.261 11 H -0.294 1.294 12 N -0.692 5.692 13 C 0.548 3.452 14 O -0.552 6.552 15 C -0.112 4.112 16 C -0.074 4.074 17 C -0.111 4.111 18 C 0.104 3.896 19 N -0.640 5.640 20 H 0.435 0.565 21 C 0.681 3.319 22 O -0.560 6.560 23 N -0.539 5.539 24 C 0.099 3.901 25 C 0.077 3.923 26 C -0.046 4.046 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -2.900 18.336 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.186 1.186 11 H -0.222 1.222 12 N -0.340 5.340 13 C 0.334 3.666 14 O -0.432 6.432 15 C -0.117 4.117 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.001 3.999 19 N -0.285 5.285 20 H 0.277 0.723 21 C 0.383 3.617 22 O -0.436 6.436 23 N -0.262 5.262 24 C -0.042 4.042 25 C -0.023 4.023 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.776 -1.857 19.041 19.214 hybrid contribution -0.351 -0.190 -0.200 0.446 sum 1.425 -2.047 18.841 19.006 Atomic orbital electron populations 1.22457 0.99156 1.00976 0.99424 1.19150 0.90227 0.94761 0.82541 0.93152 1.21025 1.33415 1.14522 0.88495 0.90111 1.24827 0.95459 0.96696 0.95509 1.69865 1.44804 1.40088 0.98074 0.86880 0.80530 0.83610 0.77508 1.20276 1.18591 1.22151 1.46136 1.64453 1.13864 1.09578 1.18029 0.78719 0.86669 0.83204 1.90738 1.51673 1.15589 1.85160 1.19858 1.03685 0.94096 0.94092 1.21138 0.96643 0.93335 0.98293 1.19989 1.03685 1.00315 0.89222 1.18161 1.01707 0.92819 0.87200 1.42873 1.63827 1.13272 1.08547 0.72340 1.15912 0.80715 0.80361 0.84748 1.91061 1.57398 1.83125 1.12005 1.44965 1.61936 1.11139 1.08176 1.21791 1.02983 0.78919 1.00550 1.17887 1.05639 0.92523 0.86293 1.20085 0.97562 1.00667 0.88437 0.92717 0.94436 0.93377 0.92241 0.76993 0.83950 0.84421 0.91079 0.89419 0.89466 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.97 37.16 0.33 -3.14 16 2 C 0.24 5.40 2.15 -69.08 -0.15 5.25 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 4 C -0.54 -13.95 9.31 -34.44 -0.32 -14.27 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 8 Si 0.89 21.16 24.37 -169.99 -4.14 17.02 16 9 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 10 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 N -0.69 -12.89 5.02 -55.94 -0.28 -13.17 16 13 C 0.55 9.80 7.73 -12.43 -0.10 9.71 16 14 O -0.55 -11.75 16.00 5.30 0.08 -11.67 16 15 C -0.11 -1.53 5.87 -104.96 -0.62 -2.14 16 16 C -0.07 -0.78 9.52 -39.19 -0.37 -1.16 16 17 C -0.11 -0.99 10.05 -39.53 -0.40 -1.39 16 18 C 0.10 1.07 7.25 -83.79 -0.61 0.47 16 19 N -0.64 -6.17 6.12 -14.27 -0.09 -6.25 16 20 H 0.43 2.89 8.96 -40.82 -0.37 2.52 16 21 C 0.68 8.45 8.82 -87.20 -0.77 7.69 16 22 O -0.56 -8.52 17.77 5.21 0.09 -8.43 16 23 N -0.54 -6.05 3.19 -126.36 -0.40 -6.46 16 24 C 0.10 0.81 11.01 59.84 0.66 1.47 16 25 C 0.08 0.89 6.82 -83.81 -0.57 0.32 16 26 C -0.05 -0.57 9.56 -39.07 -0.37 -0.94 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.40 6.26 6.55 -40.82 -0.27 5.99 16 32 H 0.14 1.30 6.38 -52.49 -0.33 0.96 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -33.81 313.84 -6.63 -40.44 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.01 Total: 4.85 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.38 Total: 3.91 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.00 Total: -50.85 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.18 Total: -20.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.81 -6.63 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269744617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.288 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds