Wall clock time and date at job start Tue Mar 31 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21580 * 119.99806 * 359.97438 * 13 12 2 15 15 C 1.47618 * 119.99866 * 179.97438 * 13 12 2 16 16 C 1.39860 * 120.01803 * 359.72877 * 15 13 12 17 17 C 1.37650 * 120.14766 * 179.73392 * 16 15 13 18 18 C 1.38970 * 120.04268 * 0.51920 * 17 16 15 19 19 N 1.38885 * 133.11545 * 179.75804 * 18 17 16 20 20 H 0.97005 * 125.75633 * 0.02562 * 19 18 17 21 21 C 1.34603 * 108.48668 * 180.02562 * 19 18 17 22 22 O 1.21672 * 125.14745 * 179.97438 * 21 19 18 23 23 N 1.34641 * 109.71194 * 359.97438 * 21 19 18 24 24 C 1.46496 * 125.87190 * 180.02562 * 23 21 19 25 25 C 1.39383 * 108.25857 * 0.02562 * 23 21 19 26 26 C 1.38251 * 133.22603 * 180.02562 * 25 23 21 27 27 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 29 29 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 32 32 H 1.07996 * 119.92668 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.97653 * 180.25317 * 17 16 15 34 34 H 1.09001 * 109.47238 * 269.97610 * 24 23 21 35 35 H 1.08998 * 109.46935 * 29.97561 * 24 23 21 36 36 H 1.08999 * 109.47163 * 149.97456 * 24 23 21 37 37 H 1.07999 * 120.13402 * 359.95133 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1616 2.4117 15 6 2.6386 -0.7142 3.5627 16 6 2.9654 -2.0727 3.5019 17 6 3.4292 -2.7230 4.6229 18 6 3.5636 -2.0332 5.8218 19 7 3.9893 -2.4074 7.0897 20 1 4.2849 -3.2940 7.3497 21 6 3.9224 -1.3324 7.8970 22 8 4.2252 -1.3214 9.0753 23 7 3.4697 -0.2710 7.2032 24 6 3.2620 1.0777 7.7361 25 6 3.2327 -0.6759 5.8907 26 6 2.7720 -0.0181 4.7654 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.9028 -0.5285 -4.4375 31 1 2.2491 -1.6317 1.1527 32 1 2.8574 -2.6117 2.5723 33 1 3.6846 -3.7711 4.5718 34 1 2.2450 1.1646 8.1187 35 1 3.9708 1.2626 8.5433 36 1 3.4155 1.8095 6.9430 37 1 2.5160 1.0298 4.8167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269744617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:04 Heat of formation + Delta-G solvation = -28.136931 kcal Electronic energy + Delta-G solvation = -22156.807675 eV Core-core repulsion = 18706.202740 eV Total energy + Delta-G solvation = -3450.604934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.60987 -40.91313 -39.15795 -37.06575 -36.76909 -36.09019 -34.38725 -32.11282 -31.59339 -30.02013 -28.49866 -27.18083 -25.09890 -23.68443 -22.82497 -22.42469 -21.37500 -19.82262 -19.10390 -18.48392 -17.84830 -17.70184 -17.19466 -16.90502 -16.49939 -15.94340 -15.82912 -15.29577 -15.05441 -14.92146 -14.70751 -14.55744 -14.13938 -14.06974 -13.94446 -13.61471 -13.39779 -13.16941 -12.74235 -12.33615 -12.11756 -12.05196 -11.90859 -11.59300 -11.56499 -11.23201 -10.89073 -10.82203 -9.91456 -9.52806 -9.01570 -8.34213 -6.39697 -0.25868 0.18045 1.19111 1.31315 1.39953 1.48753 1.66760 1.88007 2.10164 2.30032 2.45504 2.79242 3.02838 3.39197 3.72049 3.78700 4.05357 4.11947 4.20728 4.41644 4.47815 4.50099 4.58186 4.66404 4.70320 4.75486 4.91853 5.03761 5.15222 5.27060 5.34112 5.35269 5.46607 5.49324 5.65749 5.77338 6.09752 6.17440 6.62287 6.87546 7.02663 7.22589 7.43074 8.80716 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003371 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.790472 B = 8305.040871 C = 8845.440873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.025 0.975 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.936 3.064 9 H -0.260 1.260 10 H -0.261 1.261 11 H -0.295 1.295 12 N -0.691 5.691 13 C 0.550 3.450 14 O -0.592 6.592 15 C -0.130 4.130 16 C -0.066 4.066 17 C -0.092 4.092 18 C 0.111 3.889 19 N -0.624 5.624 20 H 0.449 0.551 21 C 0.672 3.328 22 O -0.593 6.593 23 N -0.540 5.540 24 C 0.090 3.910 25 C 0.065 3.935 26 C -0.045 4.045 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.270 0.730 31 H 0.409 0.591 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -3.990 19.503 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.763 3.237 9 H -0.186 1.186 10 H -0.186 1.186 11 H -0.223 1.223 12 N -0.340 5.340 13 C 0.338 3.662 14 O -0.474 6.474 15 C -0.135 4.135 16 C -0.087 4.087 17 C -0.112 4.112 18 C 0.007 3.993 19 N -0.269 5.269 20 H 0.294 0.706 21 C 0.374 3.626 22 O -0.472 6.472 23 N -0.262 5.262 24 C -0.050 4.050 25 C -0.035 4.035 26 C -0.068 4.068 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.246 0.754 32 H 0.177 0.823 33 H 0.196 0.804 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.461 -2.985 20.223 20.495 hybrid contribution -0.174 0.095 -0.479 0.518 sum 1.287 -2.890 19.745 19.997 Atomic orbital electron populations 1.22358 0.97735 1.01907 0.99480 1.18799 0.91268 0.93296 0.82981 0.95758 1.21261 1.32297 1.13679 0.89731 0.91995 1.25519 0.96818 0.99190 0.95427 1.69970 1.46698 1.41900 0.98640 0.86055 0.79870 0.80587 0.77157 1.18586 1.18596 1.22265 1.45909 1.64829 1.14480 1.08810 1.18575 0.77534 0.86226 0.83862 1.90711 1.53368 1.17476 1.85867 1.19490 1.06257 0.95356 0.92424 1.21315 0.95731 0.91989 0.99655 1.20312 1.01496 1.01866 0.87550 1.18371 1.00809 0.92391 0.87697 1.42778 1.62801 1.13464 1.07874 0.70602 1.16071 0.80891 0.81070 0.84595 1.91036 1.58969 1.83738 1.13434 1.45150 1.61239 1.11823 1.08016 1.22023 1.03785 0.78056 1.01137 1.17889 1.06197 0.93303 0.86150 1.19961 0.97738 1.00492 0.88561 0.91350 0.93474 0.94145 0.92116 0.75366 0.82298 0.80402 0.89976 0.89157 0.88199 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.49 8.97 71.98 0.65 -5.85 16 2 C 0.24 10.90 2.15 44.24 0.10 11.00 16 3 H 0.02 1.24 6.63 -2.38 -0.02 1.23 16 4 C -0.53 -27.65 9.31 25.60 0.24 -27.42 16 5 H 0.06 3.38 7.98 -2.91 -0.02 3.36 16 6 C 0.03 1.65 5.45 84.66 0.46 2.11 16 7 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 8 Si 0.94 43.41 24.37 68.60 1.67 45.08 16 9 H -0.26 -11.33 6.87 99.48 0.68 -10.65 16 10 H -0.26 -12.03 6.53 99.48 0.65 -11.38 16 11 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 12 N -0.69 -25.10 5.02 -449.17 -2.25 -27.35 16 13 C 0.55 19.29 7.73 86.72 0.67 19.96 16 14 O -0.59 -25.30 16.00 -3.97 -0.06 -25.37 16 15 C -0.13 -3.34 5.87 -20.08 -0.12 -3.46 16 16 C -0.07 -1.21 9.52 22.52 0.21 -0.99 16 17 C -0.09 -1.24 10.05 22.31 0.22 -1.02 16 18 C 0.11 1.94 7.25 38.59 0.28 2.22 16 19 N -0.62 -10.30 6.12 -317.40 -1.94 -12.24 16 20 H 0.45 4.57 8.96 -92.70 -0.83 3.73 16 21 C 0.67 15.62 8.82 179.15 1.58 17.20 16 22 O -0.59 -17.51 17.77 -4.26 -0.08 -17.58 16 23 N -0.54 -11.35 3.19 -672.00 -2.14 -13.49 16 24 C 0.09 1.39 11.01 127.77 1.41 2.79 16 25 C 0.07 1.39 6.82 38.34 0.26 1.65 16 26 C -0.05 -1.09 9.56 22.60 0.22 -0.87 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 30 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.41 12.34 6.55 -92.71 -0.61 11.73 16 32 H 0.16 2.34 6.38 -2.91 -0.02 2.32 16 33 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.34 8.03 -2.39 -0.02 1.32 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.14 3.38 7.64 -2.91 -0.02 3.36 16 Total: -1.00 -73.41 313.84 1.29 -72.12 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.38 Total: 15.58 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.18 Total: 17.33 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -6.04 Total: -107.17 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.14 Total: -42.95 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.67 Total: 45.08 kcal Total: -73.41 1.29 -72.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269744617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.984 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds