Wall clock time and date at job start Tue Mar 31 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48496 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46855 * 299.99510 * 3 2 1 6 6 H 1.48497 * 109.47058 * 59.99823 * 3 2 1 7 7 C 1.39941 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99411 * 197.89456 * 7 2 1 9 9 C 1.41433 * 120.00291 * 17.89328 * 7 2 1 10 10 C 1.40782 * 120.17916 * 204.43407 * 9 7 2 11 11 C 1.37709 * 120.04322 * 180.02562 * 10 9 7 12 12 C 1.38382 * 120.40553 * 359.67863 * 11 10 9 13 13 C 1.39876 * 120.35867 * 0.60318 * 12 11 10 14 14 C 1.47885 * 120.02173 * 179.69312 * 13 12 11 15 15 O 1.21553 * 119.99746 * 179.73130 * 14 13 12 16 16 N 1.34781 * 120.00315 * 359.72683 * 14 13 12 17 17 N 1.40099 * 119.99832 * 180.02562 * 16 14 13 18 18 C 1.46372 * 119.33031 * 105.00360 * 17 16 14 19 19 C 1.53243 * 109.15486 * 150.91700 * 18 17 16 20 20 C 1.53234 * 108.56659 * 55.47622 * 19 18 17 21 21 N 1.46389 * 109.15174 * 304.52418 * 20 19 18 22 22 C 1.34130 * 121.33981 * 29.31608 * 21 20 19 23 23 O 1.21589 * 118.69858 * 179.15279 * 22 21 20 24 24 C 1.39029 * 119.94755 * 359.42167 * 13 12 11 25 25 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.98029 * 0.02569 * 10 9 7 27 27 H 1.07996 * 119.79647 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.81406 * 180.31814 * 12 11 10 29 29 H 0.96993 * 119.99585 * 359.97438 * 16 14 13 30 30 H 1.09004 * 109.52724 * 31.00974 * 18 17 16 31 31 H 1.09006 * 109.57526 * 270.84529 * 18 17 16 32 32 H 1.09004 * 109.62028 * 295.75549 * 19 18 17 33 33 H 1.09004 * 109.77431 * 175.29279 * 19 18 17 34 34 H 1.08996 * 109.52778 * 184.62022 * 20 19 18 35 35 H 1.09004 * 109.57696 * 64.45391 * 20 19 18 36 36 H 0.97002 * 119.32665 * 209.02988 * 21 20 19 37 37 H 1.08006 * 120.19931 * 180.24893 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2344 0.2880 9 6 1.3521 -2.4074 -0.3752 10 6 1.8263 -3.6500 0.0863 11 6 1.1859 -4.8122 -0.2818 12 6 0.0708 -4.7684 -1.1001 13 6 -0.4113 -3.5436 -1.5731 14 6 -1.5996 -3.5060 -2.4527 15 8 -2.0211 -2.4410 -2.8596 16 7 -2.2151 -4.6527 -2.8033 17 7 -3.3404 -4.6171 -3.6370 18 6 -3.2074 -5.0176 -5.0386 19 6 -4.5430 -5.5882 -5.5274 20 6 -5.6378 -4.5439 -5.2848 21 7 -5.6388 -4.1690 -3.8698 22 6 -4.5170 -4.2122 -3.1358 23 8 -4.5696 -3.8754 -1.9686 24 6 0.2240 -2.3611 -1.2112 25 1 -0.4850 0.8400 -0.0004 26 1 2.6929 -3.6918 0.7295 27 1 1.5533 -5.7633 0.0743 28 1 -0.4271 -5.6854 -1.3786 29 1 -1.8784 -5.5025 -2.4789 30 1 -2.4317 -5.7782 -5.1281 31 1 -2.9389 -4.1506 -5.6423 32 1 -4.7764 -6.4983 -4.9747 33 1 -4.4805 -5.8125 -6.5923 34 1 -6.6076 -4.9641 -5.5511 35 1 -5.4429 -3.6619 -5.8951 36 1 -6.4669 -3.8796 -3.4556 37 1 -0.1472 -1.4128 -1.5709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272311027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:13 Heat of formation + Delta-G solvation = -1.762992 kcal Electronic energy + Delta-G solvation = -22638.272555 eV Core-core repulsion = 19188.811280 eV Total energy + Delta-G solvation = -3449.461275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67210 -38.77065 -36.97526 -36.41443 -35.13254 -33.74185 -32.00129 -30.73976 -29.52838 -29.30209 -25.86786 -25.25270 -23.68668 -22.50767 -20.97615 -20.07427 -19.20176 -18.04048 -17.54481 -17.35189 -16.36485 -15.83456 -15.54351 -15.10559 -14.68599 -14.28938 -13.98270 -13.92638 -13.81965 -13.73188 -13.19748 -12.77015 -12.50993 -12.37669 -11.66997 -11.64728 -11.62374 -11.16524 -11.07424 -10.73758 -10.48158 -10.11269 -10.02617 -9.70448 -9.46354 -9.20560 -9.13870 -9.05237 -8.51847 -7.64361 -7.51489 -6.77832 -4.39923 1.93211 2.20436 2.81974 3.09665 3.14532 3.16415 3.29729 3.50270 3.87430 3.93835 4.36378 4.42384 4.53687 4.66156 4.85311 5.08310 5.25329 5.28894 5.40448 5.61048 5.67994 5.75667 6.07096 6.19103 6.27187 6.71216 6.96634 7.00827 7.01673 7.20421 7.28470 7.37592 7.64516 7.71900 7.79553 7.91091 8.02242 8.18250 8.50834 8.60816 8.81794 8.84176 9.10694 10.16669 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.004215 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.285417 B = 6640.744643 C = 7370.864200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.211 4.211 11 C -0.095 4.095 12 C -0.219 4.219 13 C -0.116 4.116 14 C 0.572 3.428 15 O -0.526 6.526 16 N -0.512 5.512 17 N -0.422 5.422 18 C 0.117 3.883 19 C -0.149 4.149 20 C 0.108 3.892 21 N -0.736 5.736 22 C 0.714 3.286 23 O -0.573 6.573 24 C -0.090 4.090 25 H 0.285 0.715 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.413 0.587 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -10.297 -11.838 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.097 3.903 10 C -0.231 4.231 11 C -0.114 4.114 12 C -0.239 4.239 13 C -0.121 4.121 14 C 0.362 3.638 15 O -0.400 6.400 16 N -0.263 5.263 17 N -0.250 5.250 18 C -0.006 4.006 19 C -0.188 4.188 20 C -0.016 4.016 21 N -0.397 5.397 22 C 0.414 3.586 23 O -0.448 6.448 24 C -0.110 4.110 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.256 0.744 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.254 0.746 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.159 -9.228 -11.559 16.892 hybrid contribution 0.033 0.355 0.199 0.408 sum -8.126 -8.873 -11.361 16.547 Atomic orbital electron populations 1.69807 1.07595 1.29811 1.33164 1.25994 0.94750 1.01625 0.92365 0.86232 0.80846 0.80826 0.78700 1.18296 1.19572 1.19888 1.19626 0.98272 0.91008 1.39854 0.89934 1.17580 0.91051 0.92550 0.89104 1.21100 1.03566 0.92696 1.05700 1.20424 0.95877 0.96808 0.98249 1.20322 1.01331 0.94387 1.07882 1.19246 0.95596 0.95625 1.01637 1.19248 0.82745 0.82449 0.79333 1.90703 1.65455 1.29460 1.54377 1.44981 1.21395 1.10434 1.49489 1.45461 1.01156 1.71635 1.06738 1.21824 0.98292 1.00358 0.80152 1.22225 0.94288 0.99098 1.03189 1.21537 0.99821 0.97863 0.82425 1.44873 1.10030 1.73602 1.11149 1.15392 0.79929 0.78385 0.84854 1.91023 1.84190 1.53762 1.15817 1.21620 0.96424 0.96274 0.96699 0.90380 0.88503 0.88745 0.89241 0.74402 0.89451 0.91251 0.90182 0.87988 0.89767 0.91620 0.74605 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.40 10.96 55.55 0.61 -20.79 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 19.08 29.60 -169.99 -5.03 14.05 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 8 H 0.08 2.07 7.91 -52.48 -0.41 1.66 16 9 C 0.10 2.68 5.57 -106.88 -0.60 2.08 16 10 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 11 C -0.10 -2.05 10.01 -39.72 -0.40 -2.44 16 12 C -0.22 -4.69 9.55 -38.92 -0.37 -5.06 16 13 C -0.12 -2.85 5.87 -105.04 -0.62 -3.47 16 14 C 0.57 13.57 7.40 -12.31 -0.09 13.48 16 15 O -0.53 -14.40 16.41 5.32 0.09 -14.32 16 16 N -0.51 -9.60 5.45 30.54 0.17 -9.43 16 17 N -0.42 -6.95 3.15 -65.53 -0.21 -7.16 16 18 C 0.12 1.26 6.81 -3.99 -0.03 1.23 16 19 C -0.15 -1.02 6.20 -26.48 -0.16 -1.18 16 20 C 0.11 0.82 7.21 -3.98 -0.03 0.80 16 21 N -0.74 -9.11 5.58 -65.52 -0.37 -9.47 16 22 C 0.71 12.90 7.91 -88.06 -0.70 12.20 16 23 O -0.57 -13.50 17.00 5.29 0.09 -13.41 16 24 C -0.09 -2.47 8.24 -38.44 -0.32 -2.79 16 25 H 0.28 7.20 8.30 -40.82 -0.34 6.86 16 26 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.09 1.57 6.38 -52.49 -0.33 1.23 16 29 H 0.41 6.53 6.85 -182.60 -1.25 5.28 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.42 4.55 8.88 -40.82 -0.36 4.19 16 37 H 0.13 3.99 5.74 -52.48 -0.30 3.69 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -36.55 317.23 -9.17 -45.71 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.18 Total: 11.38 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.12 Total: -1.35 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.20 Total: -46.85 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.18 Total: -27.72 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.55 -9.17 -45.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272311027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.952 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds