Wall clock time and date at job start Tue Mar 31 2020 02:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48496 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46855 * 299.99510 * 3 2 1 6 6 H 1.48497 * 109.47058 * 59.99823 * 3 2 1 7 7 C 1.39941 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99411 * 197.89456 * 7 2 1 9 9 C 1.41433 * 120.00291 * 17.89328 * 7 2 1 10 10 C 1.40782 * 120.17916 * 204.43407 * 9 7 2 11 11 C 1.37709 * 120.04322 * 180.02562 * 10 9 7 12 12 C 1.38382 * 120.40553 * 359.67863 * 11 10 9 13 13 C 1.39876 * 120.35867 * 0.60318 * 12 11 10 14 14 C 1.47885 * 120.02173 * 179.69312 * 13 12 11 15 15 O 1.21553 * 119.99746 * 179.73130 * 14 13 12 16 16 N 1.34781 * 120.00315 * 359.72683 * 14 13 12 17 17 N 1.40099 * 119.99832 * 180.02562 * 16 14 13 18 18 C 1.46372 * 119.33031 * 105.00360 * 17 16 14 19 19 C 1.53243 * 109.15486 * 150.91700 * 18 17 16 20 20 C 1.53234 * 108.56659 * 55.47622 * 19 18 17 21 21 N 1.46389 * 109.15174 * 304.52418 * 20 19 18 22 22 C 1.34130 * 121.33981 * 29.31608 * 21 20 19 23 23 O 1.21589 * 118.69858 * 179.15279 * 22 21 20 24 24 C 1.39029 * 119.94755 * 359.42167 * 13 12 11 25 25 H 0.96996 * 119.99973 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.98029 * 0.02569 * 10 9 7 27 27 H 1.07996 * 119.79647 * 179.97438 * 11 10 9 28 28 H 1.07999 * 119.81406 * 180.31814 * 12 11 10 29 29 H 0.96993 * 119.99585 * 359.97438 * 16 14 13 30 30 H 1.09004 * 109.52724 * 31.00974 * 18 17 16 31 31 H 1.09006 * 109.57526 * 270.84529 * 18 17 16 32 32 H 1.09004 * 109.62028 * 295.75549 * 19 18 17 33 33 H 1.09004 * 109.77431 * 175.29279 * 19 18 17 34 34 H 1.08996 * 109.52778 * 184.62022 * 20 19 18 35 35 H 1.09004 * 109.57696 * 64.45391 * 20 19 18 36 36 H 0.97002 * 119.32665 * 209.02988 * 21 20 19 37 37 H 1.08006 * 120.19931 * 180.24893 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2344 0.2880 9 6 1.3521 -2.4074 -0.3752 10 6 1.8263 -3.6500 0.0863 11 6 1.1859 -4.8122 -0.2818 12 6 0.0708 -4.7684 -1.1001 13 6 -0.4113 -3.5436 -1.5731 14 6 -1.5996 -3.5060 -2.4527 15 8 -2.0211 -2.4410 -2.8596 16 7 -2.2151 -4.6527 -2.8033 17 7 -3.3404 -4.6171 -3.6370 18 6 -3.2074 -5.0176 -5.0386 19 6 -4.5430 -5.5882 -5.5274 20 6 -5.6378 -4.5439 -5.2848 21 7 -5.6388 -4.1690 -3.8698 22 6 -4.5170 -4.2122 -3.1358 23 8 -4.5696 -3.8754 -1.9686 24 6 0.2240 -2.3611 -1.2112 25 1 -0.4850 0.8400 -0.0004 26 1 2.6929 -3.6918 0.7295 27 1 1.5533 -5.7633 0.0743 28 1 -0.4271 -5.6854 -1.3786 29 1 -1.8784 -5.5025 -2.4789 30 1 -2.4317 -5.7782 -5.1281 31 1 -2.9389 -4.1506 -5.6423 32 1 -4.7764 -6.4983 -4.9747 33 1 -4.4805 -5.8125 -6.5923 34 1 -6.6076 -4.9641 -5.5511 35 1 -5.4429 -3.6619 -5.8951 36 1 -6.4669 -3.8796 -3.4556 37 1 -0.1472 -1.4128 -1.5709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272311027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:12 Heat of formation + Delta-G solvation = -29.603239 kcal Electronic energy + Delta-G solvation = -22639.479798 eV Core-core repulsion = 19188.811280 eV Total energy + Delta-G solvation = -3450.668518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99582 -40.48353 -38.80759 -37.63554 -36.55890 -35.63270 -33.37667 -32.13023 -31.34923 -30.88151 -27.29297 -26.69552 -25.11382 -23.83577 -22.84092 -21.68567 -20.51076 -19.73926 -18.87347 -18.56171 -17.96873 -17.23276 -16.99062 -16.65044 -16.38291 -15.77552 -15.65463 -15.37654 -15.11712 -14.76313 -14.67673 -14.56432 -14.31511 -13.52877 -13.22344 -13.00301 -12.81168 -12.57561 -12.47308 -12.32695 -12.19826 -11.97005 -11.56025 -11.53364 -11.11381 -11.08212 -10.76585 -10.26784 -9.85104 -9.53312 -9.42062 -8.68484 -6.40630 0.30265 0.63479 0.97897 1.35013 1.45285 1.52485 1.94668 2.04947 2.17840 2.45678 2.74637 3.14047 3.66762 3.73103 3.87285 3.94923 4.24313 4.39492 4.42528 4.55612 4.59768 4.69816 4.77601 4.87416 5.05452 5.14753 5.16348 5.27623 5.28745 5.47091 5.77233 5.83637 5.89344 5.98557 6.02214 6.21920 6.31691 6.57487 6.62607 6.85109 6.92072 7.09050 7.59468 8.28363 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.004215 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.285417 B = 6640.744643 C = 7370.864200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.068 3.932 10 C -0.212 4.212 11 C -0.092 4.092 12 C -0.197 4.197 13 C -0.131 4.131 14 C 0.568 3.432 15 O -0.576 6.576 16 N -0.498 5.498 17 N -0.424 5.424 18 C 0.103 3.897 19 C -0.136 4.136 20 C 0.097 3.903 21 N -0.722 5.722 22 C 0.700 3.300 23 O -0.643 6.643 24 C -0.130 4.130 25 H 0.285 0.715 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.429 0.571 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.421 0.579 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -13.317 -13.488 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.169 1.169 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.524 4.524 8 H 0.107 0.893 9 C 0.066 3.934 10 C -0.232 4.232 11 C -0.109 4.109 12 C -0.216 4.216 13 C -0.135 4.135 14 C 0.359 3.641 15 O -0.455 6.455 16 N -0.247 5.247 17 N -0.252 5.252 18 C -0.017 4.017 19 C -0.175 4.175 20 C -0.025 4.025 21 N -0.381 5.381 22 C 0.400 3.600 23 O -0.524 6.524 24 C -0.151 4.151 25 H 0.096 0.904 26 H 0.132 0.868 27 H 0.162 0.838 28 H 0.155 0.845 29 H 0.275 0.725 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.260 0.740 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.240 -12.345 -13.280 19.916 hybrid contribution -0.042 1.039 0.600 1.200 sum -8.282 -11.307 -12.679 18.900 Atomic orbital electron populations 1.69932 1.09536 1.30572 1.35459 1.26946 0.95303 1.05303 0.91240 0.85116 0.79813 0.75848 0.78690 1.16896 1.19655 1.18969 1.19928 0.98740 0.92065 1.41669 0.89304 1.17931 0.91513 0.94200 0.89738 1.21452 1.03923 0.92562 1.05216 1.20947 0.95007 0.97977 0.97014 1.20861 1.00583 0.94720 1.05460 1.19529 0.95953 0.96125 1.01923 1.19213 0.82801 0.83070 0.79056 1.90665 1.66898 1.31581 1.56315 1.44556 1.21460 1.09432 1.49300 1.45914 0.99621 1.71342 1.08311 1.22319 1.01919 1.00933 0.76547 1.22297 0.91044 0.98428 1.05686 1.22000 1.02618 0.98734 0.79161 1.44928 1.08372 1.71988 1.12851 1.15883 0.81385 0.78142 0.84580 1.90969 1.85569 1.56799 1.19027 1.21410 0.98438 0.96070 0.99194 0.90432 0.86832 0.83764 0.84455 0.72492 0.87066 0.92075 0.89439 0.83564 0.85543 0.91209 0.74036 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.86 10.96 21.83 0.24 -48.62 16 2 C 0.03 1.44 5.14 85.25 0.44 1.88 16 3 Si 0.99 40.83 29.60 68.60 2.03 42.87 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.49 -27.52 9.05 23.47 0.21 -27.30 16 8 H 0.09 4.60 7.91 -2.91 -0.02 4.58 16 9 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 10 C -0.21 -9.98 9.78 22.77 0.22 -9.76 16 11 C -0.09 -3.65 10.01 22.18 0.22 -3.43 16 12 C -0.20 -7.96 9.55 22.70 0.22 -7.75 16 13 C -0.13 -6.56 5.87 -20.14 -0.12 -6.67 16 14 C 0.57 27.82 7.40 86.80 0.64 28.46 16 15 O -0.58 -33.50 16.41 -3.88 -0.06 -33.57 16 16 N -0.50 -18.38 5.45 -175.57 -0.96 -19.33 16 17 N -0.42 -13.59 3.15 -479.84 -1.51 -15.10 16 18 C 0.10 1.96 6.81 86.48 0.59 2.55 16 19 C -0.14 -1.26 6.20 30.75 0.19 -1.06 16 20 C 0.10 1.13 7.21 86.48 0.62 1.75 16 21 N -0.72 -16.92 5.58 -479.84 -2.68 -19.60 16 22 C 0.70 25.31 7.91 179.45 1.42 26.73 16 23 O -0.64 -31.44 17.00 -4.00 -0.07 -31.51 16 24 C -0.13 -7.59 8.24 23.01 0.19 -7.40 16 25 H 0.29 15.57 8.30 -92.71 -0.77 14.80 16 26 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.14 4.18 6.38 -2.91 -0.02 4.16 16 29 H 0.43 12.60 6.85 -213.33 -1.46 11.14 16 30 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.15 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.42 8.86 8.88 -92.71 -0.82 8.04 16 37 H 0.10 6.23 5.74 -2.91 -0.02 6.21 16 Total: -1.00 -89.60 317.23 0.56 -89.04 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -1.15 Total: 34.13 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.73 Total: 1.70 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -4.91 Total: -102.66 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -0.13 Total: -65.07 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.87 kcal Total: -89.60 0.56 -89.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272311027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.436 kcal (2) G-P(sol) polarization free energy of solvation -89.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds