Wall clock time and date at job start Tue Mar 31 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48500 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47118 * 299.99941 * 3 2 1 6 6 H 1.48504 * 109.47133 * 59.99801 * 3 2 1 7 7 C 1.40221 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00552 * 197.88198 * 7 2 1 9 9 C 1.41112 * 119.99686 * 17.87953 * 7 2 1 10 10 C 1.40883 * 120.10329 * 204.62658 * 9 7 2 11 11 C 1.36321 * 119.89127 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10695 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89340 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00179 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99519 * 179.97438 * 13 12 11 16 16 N 1.40104 * 119.99734 * 180.02562 * 15 13 12 17 17 C 1.46385 * 119.32995 * 254.72873 * 16 15 13 18 18 C 1.53239 * 109.15162 * 151.21371 * 17 16 15 19 19 C 1.53246 * 108.56204 * 55.48699 * 18 17 16 20 20 N 1.46384 * 109.14813 * 304.51454 * 19 18 17 21 21 C 1.34132 * 121.34088 * 29.05884 * 20 19 18 22 22 O 1.21592 * 118.69251 * 179.44691 * 21 20 19 23 23 C 1.40012 * 120.20848 * 0.23729 * 12 11 10 24 24 C 1.36316 * 120.10565 * 359.47739 * 23 12 11 25 25 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.05813 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.94530 * 180.02562 * 11 10 9 28 28 H 0.96997 * 120.00304 * 0.02562 * 15 13 12 29 29 H 1.08993 * 109.52439 * 271.11969 * 17 16 15 30 30 H 1.09001 * 109.51934 * 31.31473 * 17 16 15 31 31 H 1.08994 * 109.62486 * 295.75862 * 18 17 16 32 32 H 1.09003 * 109.77278 * 175.29381 * 18 17 16 33 33 H 1.09000 * 109.51956 * 184.61517 * 19 18 17 34 34 H 1.08996 * 109.58027 * 64.44787 * 19 18 17 35 35 H 0.97002 * 119.32589 * 209.03561 * 20 19 18 36 36 H 1.07995 * 119.94472 * 179.72358 * 23 12 11 37 37 H 1.08000 * 120.05093 * 180.25321 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7005 1.3465 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2143 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3532 -2.4070 -0.3741 10 6 1.8268 -3.6493 0.0920 11 6 1.1916 -4.7989 -0.2731 12 6 0.0706 -4.7464 -1.1103 13 6 -0.6135 -5.9944 -1.5032 14 8 -0.2034 -7.0655 -1.0995 15 7 -1.6931 -5.9463 -2.3086 16 7 -2.3426 -7.1305 -2.6810 17 6 -2.1644 -7.6498 -4.0380 18 6 -2.3134 -9.1747 -4.0164 19 6 -3.6701 -9.5235 -3.3949 20 7 -3.7665 -8.9025 -2.0728 21 6 -3.1193 -7.7625 -1.7886 22 8 -3.2415 -7.2832 -0.6779 23 6 -0.4005 -3.5146 -1.5805 24 6 0.2246 -2.3593 -1.2161 25 1 -0.4850 0.8400 -0.0004 26 1 2.6917 -3.6909 0.7374 27 1 1.5537 -5.7517 0.0840 28 1 -2.0204 -5.0918 -2.6304 29 1 -2.9200 -7.2192 -4.6950 30 1 -1.1712 -7.3859 -4.4015 31 1 -1.5137 -9.6123 -3.4189 32 1 -2.2657 -9.5644 -5.0333 33 1 -3.7583 -10.6055 -3.2965 34 1 -4.4710 -9.1492 -4.0325 35 1 -4.3098 -9.3238 -1.3885 36 1 -1.2629 -3.4794 -2.2296 37 1 -0.1420 -1.4093 -1.5760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273136521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:16 Heat of formation + Delta-G solvation = -6.392436 kcal Electronic energy + Delta-G solvation = -22368.194243 eV Core-core repulsion = 18918.532221 eV Total energy + Delta-G solvation = -3449.662022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63228 -38.69294 -37.06503 -36.38541 -35.08321 -33.87821 -31.98042 -30.71397 -29.55411 -29.39393 -26.19027 -25.46036 -23.48924 -22.07821 -20.99724 -20.04132 -19.40797 -17.68615 -17.52590 -17.29650 -16.93956 -15.99367 -15.52718 -15.42018 -14.28218 -14.23914 -13.99052 -13.88806 -13.82013 -13.59874 -13.21309 -12.81436 -12.40334 -12.12576 -11.95582 -11.60256 -11.57150 -11.39004 -11.28332 -10.95701 -10.66097 -10.09133 -10.03533 -9.57757 -9.45764 -9.32249 -9.13274 -8.98880 -8.49852 -7.72857 -7.55656 -7.03742 -4.60725 1.99260 2.22056 2.90672 2.95408 3.01089 3.04006 3.31483 3.52690 3.74225 3.87132 4.40143 4.47853 4.55071 4.65225 4.90912 5.11295 5.21411 5.29499 5.49837 5.56754 5.80080 5.93622 6.02938 6.22916 6.31840 6.76923 6.82406 6.99487 7.02238 7.11750 7.33571 7.43194 7.60150 7.74687 7.81692 7.85508 8.05920 8.12019 8.39269 8.62678 8.65360 8.74540 9.20845 9.88154 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.003311 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.373255 B = 8455.753658 C = 8600.180448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.237 4.237 11 C -0.018 4.018 12 C -0.275 4.275 13 C 0.580 3.420 14 O -0.557 6.557 15 N -0.517 5.517 16 N -0.421 5.421 17 C 0.118 3.882 18 C -0.153 4.153 19 C 0.110 3.890 20 N -0.736 5.736 21 C 0.714 3.286 22 O -0.576 6.576 23 C -0.061 4.061 24 C -0.177 4.177 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.412 0.588 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -9.889 -11.057 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.257 4.257 11 C -0.037 4.037 12 C -0.281 4.281 13 C 0.375 3.625 14 O -0.435 6.435 15 N -0.266 5.266 16 N -0.249 5.249 17 C -0.005 4.005 18 C -0.192 4.192 19 C -0.014 4.014 20 N -0.397 5.397 21 C 0.415 3.585 22 O -0.451 6.451 23 C -0.081 4.081 24 C -0.196 4.196 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.254 0.746 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.221 -10.132 -10.291 15.725 hybrid contribution -0.205 0.919 -0.013 0.941 sum -6.426 -9.213 -10.304 15.243 Atomic orbital electron populations 1.69756 1.07927 1.30030 1.31498 1.26117 0.94812 1.01940 0.91918 0.86163 0.81098 0.80171 0.78867 1.18046 1.19376 1.19662 1.19893 0.98470 0.91156 1.37278 0.89601 1.17795 0.90323 0.92192 0.87100 1.20701 1.04656 0.92521 1.07810 1.20333 0.92690 0.97295 0.93419 1.18660 1.04502 0.90043 1.14907 1.18978 0.77532 0.90195 0.75823 1.90637 1.66010 1.31552 1.55306 1.44986 1.28815 0.98676 1.54168 1.45448 1.47659 1.20029 1.11718 1.21819 1.03075 0.93379 0.82185 1.22230 0.98291 0.95548 1.03102 1.21527 0.97110 0.98493 0.84305 1.44887 1.54018 1.25160 1.15655 1.15387 0.78510 0.80617 0.83991 1.91005 1.67042 1.66194 1.20871 1.20461 0.97216 0.92541 0.97857 1.20968 0.99893 0.96849 1.01896 0.90215 0.88235 0.88050 0.74600 0.91334 0.89489 0.89914 0.88135 0.89873 0.91721 0.74694 0.89318 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 2 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 3 Si 0.91 17.23 29.60 -169.99 -5.03 12.20 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 7 C -0.44 -10.96 9.04 -37.75 -0.34 -11.30 16 8 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.31 5.57 -106.80 -0.60 2.71 16 10 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 11 C -0.02 -0.44 9.52 -39.61 -0.38 -0.81 16 12 C -0.27 -6.51 5.89 -104.73 -0.62 -7.13 16 13 C 0.58 13.32 7.42 -12.42 -0.09 13.23 16 14 O -0.56 -14.39 16.41 5.29 0.09 -14.31 16 15 N -0.52 -9.74 5.44 30.48 0.17 -9.58 16 16 N -0.42 -6.94 3.15 -65.53 -0.21 -7.15 16 17 C 0.12 1.29 6.81 -3.98 -0.03 1.26 16 18 C -0.15 -1.25 6.20 -26.48 -0.16 -1.41 16 19 C 0.11 0.83 7.21 -3.98 -0.03 0.80 16 20 N -0.74 -9.00 5.58 -65.52 -0.37 -9.36 16 21 C 0.71 12.79 7.91 -88.07 -0.70 12.09 16 22 O -0.58 -13.37 17.02 5.28 0.09 -13.28 16 23 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 24 C -0.18 -4.35 8.64 -39.27 -0.34 -4.69 16 25 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 26 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 27 H 0.10 2.40 7.63 -52.48 -0.40 2.00 16 28 H 0.41 6.79 6.83 -182.60 -1.25 5.54 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.42 4.45 8.88 -40.82 -0.36 4.09 16 36 H 0.09 1.68 6.37 -52.49 -0.33 1.34 16 37 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -34.58 317.03 -9.18 -43.76 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.18 Total: 12.43 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -4.13 Total: -1.58 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.20 Total: -44.00 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.18 Total: -27.58 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.58 -9.18 -43.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273136521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.364 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds