Wall clock time and date at job start Tue Mar 31 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39376 * 125.87077 * 2 1 4 4 C 1.38245 * 133.22698 * 0.02562 * 3 2 1 5 5 C 1.39604 * 119.72688 * 179.97438 * 4 3 2 6 6 C 1.47626 * 120.01770 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99951 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00182 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00163 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47204 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99719 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00254 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99869 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47117 * 60.00333 * 15 13 11 17 17 H 1.48500 * 109.47384 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47089 * 300.00259 * 15 13 11 19 19 C 1.39862 * 119.96552 * 359.97438 * 5 4 3 20 20 C 1.37643 * 120.14588 * 0.28218 * 19 5 4 21 21 C 1.38973 * 120.04474 * 359.44574 * 20 19 5 22 22 N 1.38885 * 133.11599 * 180.19148 * 21 20 19 23 23 H 0.96994 * 125.75085 * 0.32790 * 22 21 20 24 24 C 1.34606 * 108.48320 * 180.32193 * 22 21 20 25 25 O 1.21670 * 125.13854 * 179.97438 * 24 22 21 26 26 H 1.08997 * 109.47450 * 89.99399 * 1 2 3 27 27 H 1.08998 * 109.46915 * 209.99855 * 1 2 3 28 28 H 1.08998 * 109.46884 * 329.99242 * 1 2 3 29 29 H 1.07996 * 120.13960 * 359.96707 * 4 3 2 30 30 H 0.96998 * 120.00082 * 0.02562 * 8 6 5 31 31 H 1.09006 * 109.46823 * 299.99886 * 9 8 6 32 32 H 1.08993 * 109.47230 * 60.00394 * 9 8 6 33 33 H 1.09003 * 109.46980 * 300.00255 * 10 9 8 34 34 H 1.08999 * 109.47013 * 59.99409 * 10 9 8 35 35 H 0.97009 * 120.00087 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.92440 * 179.97438 * 19 5 4 37 37 H 1.07994 * 119.97614 * 179.69800 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2817 1.1294 0.0000 4 6 2.0202 2.4869 0.0005 5 6 3.0797 3.3960 0.0008 6 6 2.8079 4.8470 0.0008 7 8 1.6610 5.2506 0.0008 8 7 3.8310 5.7243 0.0006 9 6 3.5612 7.1642 0.0011 10 6 4.8852 7.9312 0.0002 11 6 4.6076 9.4124 0.0000 12 1 3.5889 9.7709 0.0001 13 6 5.6543 10.3098 -0.0002 14 7 6.8949 9.8732 -0.0009 15 14 5.3103 12.1459 -0.0011 16 1 4.5310 12.5041 1.2111 17 1 6.5953 12.8903 -0.0019 18 1 4.5312 12.5030 -1.2139 19 6 4.3989 2.9313 0.0013 20 6 4.6554 1.5790 -0.0044 21 6 3.6032 0.6711 0.0009 22 7 3.5468 -0.7166 0.0007 23 1 4.3103 -1.3148 0.0010 24 6 2.2539 -1.0911 0.0003 25 8 1.8581 -2.2416 -0.0004 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.0006 2.8427 0.0004 30 1 4.7460 5.4023 0.0002 31 1 2.9889 7.4269 -0.8887 32 1 2.9897 7.4265 0.8913 33 1 5.4578 7.6685 0.8897 34 1 5.4564 7.6688 -0.8903 35 1 7.6313 10.5047 -0.0014 36 1 5.2181 3.6351 0.0012 37 1 5.6751 1.2232 -0.0090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273174621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:27 Heat of formation + Delta-G solvation = -18.062584 kcal Electronic energy + Delta-G solvation = -21517.634046 eV Core-core repulsion = 18067.465968 eV Total energy + Delta-G solvation = -3450.168078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81469 -39.73497 -38.14612 -36.07567 -35.37735 -34.95986 -32.91233 -30.83933 -30.40870 -28.98414 -27.79646 -25.09767 -23.56671 -22.74528 -21.82524 -21.04516 -20.47940 -18.57428 -18.13094 -16.90190 -16.85346 -16.50463 -16.07957 -15.54545 -15.17541 -14.98428 -14.50674 -14.38356 -14.26081 -13.90265 -13.47591 -13.46240 -13.15782 -12.90588 -12.79202 -12.31455 -11.56598 -11.27850 -11.24048 -11.04755 -10.97511 -10.79622 -10.68882 -10.36615 -9.94094 -9.55422 -9.28657 -8.82874 -8.60305 -8.41407 -8.17366 -6.12320 -4.15255 0.59533 0.93098 1.91679 2.54089 2.83759 2.89048 3.29481 3.33549 3.35971 3.54624 3.73127 4.11821 4.38974 4.42489 4.73049 4.77043 4.87595 4.96949 4.99857 5.13393 5.24956 5.25283 5.35485 5.67300 5.88180 6.02828 6.10337 6.18156 6.30014 6.33938 6.46273 6.68459 6.81456 6.86441 7.47131 7.57213 7.83210 7.85336 7.91252 8.23669 8.52746 8.90372 9.49801 10.99203 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.002632 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.965471 B =10636.849166 C =11240.064851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.539 5.539 3 C 0.078 3.922 4 C -0.044 4.044 5 C -0.116 4.116 6 C 0.551 3.449 7 O -0.546 6.546 8 N -0.714 5.714 9 C 0.121 3.879 10 C 0.012 3.988 11 C -0.523 4.523 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.074 4.074 20 C -0.110 4.110 21 C 0.107 3.893 22 N -0.640 5.640 23 H 0.435 0.565 24 C 0.681 3.319 25 O -0.558 6.558 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.397 0.603 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.142 0.858 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -19.980 0.080 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.262 5.262 3 C -0.023 4.023 4 C -0.066 4.066 5 C -0.121 4.121 6 C 0.337 3.663 7 O -0.426 6.426 8 N -0.363 5.363 9 C -0.001 4.001 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.094 4.094 20 C -0.132 4.132 21 C 0.004 3.996 22 N -0.285 5.285 23 H 0.277 0.723 24 C 0.383 3.617 25 O -0.434 6.434 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.162 0.838 30 H 0.232 0.768 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.242 -20.412 0.079 21.345 hybrid contribution 0.791 0.588 -0.011 0.985 sum -5.451 -19.823 0.068 20.559 Atomic orbital electron populations 1.21802 0.74417 1.04585 1.03466 1.44973 1.07430 1.04340 1.69455 1.17879 0.88092 0.89109 1.07204 1.20076 1.00648 0.87698 0.98169 1.19767 0.93111 0.93646 1.05617 1.18036 0.85534 0.85328 0.77363 1.90762 1.21060 1.79985 1.50768 1.46258 1.08728 1.08300 1.73059 1.21788 1.01172 0.76086 1.01057 1.19330 0.90465 0.94813 0.97911 1.21004 0.93042 0.90554 1.51547 0.92263 1.24987 0.95017 0.99284 0.94941 1.69939 0.98288 1.34826 1.50249 0.86572 0.77468 0.84694 0.78798 1.20098 1.21253 1.20102 1.21117 0.96078 0.94781 0.97439 1.19996 0.97307 0.91298 1.04554 1.18178 0.94299 0.83379 1.03775 1.42888 1.08574 1.05828 1.71190 0.72265 1.15916 0.80818 0.84546 0.80439 1.91068 1.76572 1.16877 1.58862 0.91015 0.89368 0.89464 0.83781 0.76758 0.92281 0.92277 0.95863 0.95865 0.92761 0.84000 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.01 59.85 0.66 1.39 16 2 N -0.54 -5.60 3.19 -126.36 -0.40 -6.00 16 3 C 0.08 0.82 6.82 -83.82 -0.57 0.25 16 4 C -0.04 -0.50 9.56 -39.07 -0.37 -0.87 16 5 C -0.12 -1.41 5.88 -104.95 -0.62 -2.03 16 6 C 0.55 8.78 7.76 -12.43 -0.10 8.69 16 7 O -0.55 -10.59 16.33 5.29 0.09 -10.50 16 8 N -0.71 -11.52 5.50 -61.31 -0.34 -11.86 16 9 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 10 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 11 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.07 -0.69 9.52 -39.19 -0.37 -1.06 16 20 C -0.11 -0.87 10.05 -39.53 -0.40 -1.27 16 21 C 0.11 1.00 7.25 -83.78 -0.61 0.40 16 22 N -0.64 -5.67 6.12 -14.27 -0.09 -5.76 16 23 H 0.44 2.59 8.96 -40.82 -0.37 2.22 16 24 C 0.68 7.95 8.82 -87.20 -0.77 7.18 16 25 O -0.56 -8.14 17.77 5.22 0.09 -8.05 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.14 1.61 7.64 -52.49 -0.40 1.21 16 30 H 0.40 5.35 6.48 -40.82 -0.26 5.09 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.14 1.10 6.38 -52.49 -0.33 0.76 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -34.05 325.47 -8.04 -42.08 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.28 Total: 1.62 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.72 Total: 2.38 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.09 Total: -48.34 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.18 Total: -18.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.05 -8.04 -42.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273174621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.022 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds