Wall clock time and date at job start Tue Mar 31 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39376 * 125.87077 * 2 1 4 4 C 1.38245 * 133.22698 * 0.02562 * 3 2 1 5 5 C 1.39604 * 119.72688 * 179.97438 * 4 3 2 6 6 C 1.47626 * 120.01770 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99951 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00182 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00163 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.47204 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99719 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00254 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99869 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47117 * 60.00333 * 15 13 11 17 17 H 1.48500 * 109.47384 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47089 * 300.00259 * 15 13 11 19 19 C 1.39862 * 119.96552 * 359.97438 * 5 4 3 20 20 C 1.37643 * 120.14588 * 0.28218 * 19 5 4 21 21 C 1.38973 * 120.04474 * 359.44574 * 20 19 5 22 22 N 1.38885 * 133.11599 * 180.19148 * 21 20 19 23 23 H 0.96994 * 125.75085 * 0.32790 * 22 21 20 24 24 C 1.34606 * 108.48320 * 180.32193 * 22 21 20 25 25 O 1.21670 * 125.13854 * 179.97438 * 24 22 21 26 26 H 1.08997 * 109.47450 * 89.99399 * 1 2 3 27 27 H 1.08998 * 109.46915 * 209.99855 * 1 2 3 28 28 H 1.08998 * 109.46884 * 329.99242 * 1 2 3 29 29 H 1.07996 * 120.13960 * 359.96707 * 4 3 2 30 30 H 0.96998 * 120.00082 * 0.02562 * 8 6 5 31 31 H 1.09006 * 109.46823 * 299.99886 * 9 8 6 32 32 H 1.08993 * 109.47230 * 60.00394 * 9 8 6 33 33 H 1.09003 * 109.46980 * 300.00255 * 10 9 8 34 34 H 1.08999 * 109.47013 * 59.99409 * 10 9 8 35 35 H 0.97009 * 120.00087 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.92440 * 179.97438 * 19 5 4 37 37 H 1.07994 * 119.97614 * 179.69800 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2817 1.1294 0.0000 4 6 2.0202 2.4869 0.0005 5 6 3.0797 3.3960 0.0008 6 6 2.8079 4.8470 0.0008 7 8 1.6610 5.2506 0.0008 8 7 3.8310 5.7243 0.0006 9 6 3.5612 7.1642 0.0011 10 6 4.8852 7.9312 0.0002 11 6 4.6076 9.4124 0.0000 12 1 3.5889 9.7709 0.0001 13 6 5.6543 10.3098 -0.0002 14 7 6.8949 9.8732 -0.0009 15 14 5.3103 12.1459 -0.0011 16 1 4.5310 12.5041 1.2111 17 1 6.5953 12.8903 -0.0019 18 1 4.5312 12.5030 -1.2139 19 6 4.3989 2.9313 0.0013 20 6 4.6554 1.5790 -0.0044 21 6 3.6032 0.6711 0.0009 22 7 3.5468 -0.7166 0.0007 23 1 4.3103 -1.3148 0.0010 24 6 2.2539 -1.0911 0.0003 25 8 1.8581 -2.2416 -0.0004 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.0006 2.8427 0.0004 30 1 4.7460 5.4023 0.0002 31 1 2.9889 7.4269 -0.8887 32 1 2.9897 7.4265 0.8913 33 1 5.4578 7.6685 0.8897 34 1 5.4564 7.6688 -0.8903 35 1 7.6313 10.5047 -0.0014 36 1 5.2181 3.6351 0.0012 37 1 5.6751 1.2232 -0.0090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273174621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:26 Heat of formation + Delta-G solvation = -41.787316 kcal Electronic energy + Delta-G solvation = -21518.662827 eV Core-core repulsion = 18067.465968 eV Total energy + Delta-G solvation = -3451.196860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.62265 -40.93070 -39.15175 -36.99996 -36.60580 -36.10267 -34.80235 -31.91848 -31.61267 -30.17921 -28.53990 -26.80995 -24.69796 -23.64644 -22.77934 -22.55617 -21.63669 -19.53002 -19.03961 -18.43287 -17.86757 -17.71269 -17.08027 -16.63984 -16.48620 -16.42299 -16.11646 -15.27555 -15.06312 -14.88854 -14.73813 -14.56265 -14.26148 -14.02795 -14.01771 -13.41098 -13.17474 -12.90394 -12.52844 -12.34681 -12.22445 -12.06017 -11.92168 -11.64723 -11.58064 -11.43604 -10.95571 -10.56184 -10.03482 -9.55071 -9.03266 -8.20586 -6.30094 -0.29291 0.16436 1.17999 1.45045 1.46473 1.54346 1.65044 1.82165 2.06301 2.30839 2.48330 2.75291 3.14620 3.37300 3.70106 3.73444 4.03163 4.09288 4.17888 4.41414 4.46709 4.50814 4.55554 4.66903 4.70408 4.89822 4.92069 5.11814 5.24017 5.29127 5.34233 5.44715 5.54376 5.64530 5.76268 5.83282 6.08635 6.20665 6.63894 6.83082 7.01665 7.25665 7.38943 8.90841 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.002632 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.965471 B =10636.849166 C =11240.064851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.540 5.540 3 C 0.065 3.935 4 C -0.044 4.044 5 C -0.132 4.132 6 C 0.553 3.447 7 O -0.587 6.587 8 N -0.708 5.708 9 C 0.140 3.860 10 C 0.022 3.978 11 C -0.547 4.547 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.961 3.039 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.270 1.270 19 C -0.066 4.066 20 C -0.092 4.092 21 C 0.112 3.888 22 N -0.624 5.624 23 H 0.449 0.551 24 C 0.672 3.328 25 O -0.593 6.593 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.412 0.588 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.265 0.735 36 H 0.161 0.839 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -20.437 0.069 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.262 5.262 3 C -0.035 4.035 4 C -0.066 4.066 5 C -0.137 4.137 6 C 0.342 3.658 7 O -0.469 6.469 8 N -0.359 5.359 9 C 0.016 3.984 10 C -0.015 4.015 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.087 4.087 20 C -0.113 4.113 21 C 0.008 3.992 22 N -0.269 5.269 23 H 0.294 0.706 24 C 0.373 3.627 25 O -0.472 6.472 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.249 0.751 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.179 0.821 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.338 -20.884 0.068 21.555 hybrid contribution 0.521 0.665 -0.009 0.844 sum -4.817 -20.219 0.059 20.785 Atomic orbital electron populations 1.22029 0.73177 1.05388 1.04423 1.45150 1.08382 1.03988 1.68685 1.17897 0.88915 0.88803 1.07925 1.19974 1.00349 0.88021 0.98295 1.19443 0.94756 0.91040 1.08483 1.18540 0.84583 0.86796 0.75870 1.90738 1.22618 1.80972 1.52548 1.46010 1.09854 1.06710 1.73342 1.21271 0.98823 0.78192 1.00079 1.19142 0.91731 0.94015 0.96642 1.21451 0.93164 0.92457 1.51450 0.92357 1.25811 0.94835 1.03817 0.94537 1.70036 0.99060 1.36336 1.51033 0.85562 0.77499 0.79307 0.79060 1.19443 1.20727 1.19459 1.21321 0.95170 0.95903 0.96267 1.20321 0.98664 0.90117 1.02201 1.18397 0.94262 0.83570 1.02968 1.42791 1.08261 1.05905 1.69971 0.70602 1.16081 0.81625 0.84300 0.80655 1.91039 1.77301 1.18203 1.60629 0.90025 0.89188 0.88072 0.84363 0.75062 0.93317 0.93302 0.96981 0.96989 0.92576 0.82140 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 11.01 127.77 1.41 2.68 16 2 N -0.54 -10.64 3.19 -672.00 -2.14 -12.78 16 3 C 0.07 1.28 6.82 38.34 0.26 1.54 16 4 C -0.04 -0.96 9.56 22.60 0.22 -0.75 16 5 C -0.13 -3.03 5.88 -20.08 -0.12 -3.15 16 6 C 0.55 17.43 7.76 86.72 0.67 18.10 16 7 O -0.59 -23.05 16.33 -3.99 -0.07 -23.12 16 8 N -0.71 -22.49 5.50 -466.16 -2.57 -25.05 16 9 C 0.14 5.67 5.61 86.38 0.48 6.15 16 10 C 0.02 1.06 5.09 29.85 0.15 1.21 16 11 C -0.55 -29.53 9.11 25.60 0.23 -29.30 16 12 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.93 -52.63 13.29 21.45 0.28 -52.34 16 15 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.07 -1.05 9.52 22.52 0.21 -0.83 16 20 C -0.09 -1.10 10.05 22.31 0.22 -0.88 16 21 C 0.11 1.79 7.25 38.60 0.28 2.07 16 22 N -0.62 -9.60 6.12 -317.39 -1.94 -11.55 16 23 H 0.45 4.14 8.96 -92.71 -0.83 3.30 16 24 C 0.67 14.90 8.82 179.15 1.58 16.48 16 25 O -0.59 -17.01 17.77 -4.25 -0.08 -17.09 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.14 3.10 7.64 -2.91 -0.02 3.07 16 30 H 0.41 10.55 6.48 -92.71 -0.60 9.95 16 31 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 36 H 0.16 1.93 6.38 -2.91 -0.02 1.91 16 37 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -73.50 325.47 1.28 -72.22 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.30 Total: 10.86 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.07 Total: 14.28 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -6.37 Total: -101.72 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.14 Total: -40.20 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -73.50 1.28 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273174621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.432 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds