Wall clock time and date at job start Tue Mar 31 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99985 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99714 * 179.97438 * 12 11 10 15 15 H 1.08993 * 110.86194 * 301.20504 * 14 12 11 16 16 C 1.54737 * 110.97254 * 65.00373 * 14 12 11 17 17 C 1.51683 * 102.55491 * 142.33556 * 16 14 12 18 18 C 1.47640 * 125.87176 * 164.58563 * 17 16 14 19 19 C 1.40041 * 120.56685 * 179.97438 * 18 17 16 20 20 C 1.38356 * 118.28595 * 179.97438 * 19 18 17 21 21 C 1.38345 * 119.31006 * 0.02562 * 20 19 18 22 22 N 1.31911 * 121.09273 * 0.02562 * 21 20 19 23 23 C 1.31706 * 121.87893 * 359.68994 * 22 21 20 24 24 N 1.29090 * 108.26357 * 344.60659 * 17 16 14 25 25 O 1.41382 * 112.87568 * 359.68061 * 24 17 16 26 26 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 28 28 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 29 29 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 30 30 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 31 31 H 0.97001 * 119.99478 * 359.97438 * 11 10 9 32 32 H 1.09001 * 110.79160 * 260.60205 * 16 14 12 33 33 H 1.09002 * 110.79351 * 23.87621 * 16 14 12 34 34 H 1.08004 * 120.85725 * 359.96454 * 19 18 17 35 35 H 1.08003 * 120.34147 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.45457 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.71871 * 180.31049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1867 -6.0980 0.0031 13 8 3.3995 -6.0980 0.0027 14 6 1.4331 -7.4031 0.0043 15 1 0.7824 -7.4747 0.8757 16 6 0.6270 -7.5784 -1.3048 17 6 0.7716 -9.0621 -1.5849 18 6 -0.0487 -9.8486 -2.5274 19 6 0.1823 -11.2189 -2.7005 20 6 -0.6148 -11.9103 -3.5955 21 6 -1.6047 -11.2324 -4.2844 22 7 -1.7991 -9.9405 -4.1020 23 6 -1.0706 -9.2399 -3.2576 24 7 1.7350 -9.5192 -0.8573 25 8 2.3399 -8.5227 -0.0572 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6247 -2.5570 -0.8895 29 1 2.8725 -3.6047 -0.8878 30 1 2.8714 -3.6039 0.8921 31 1 0.5428 -4.9308 0.0024 32 1 -0.4194 -7.3134 -1.1533 33 1 1.0620 -6.9856 -2.1095 34 1 0.9627 -11.7231 -2.1498 35 1 -0.4659 -12.9681 -3.7545 36 1 -2.2280 -11.7697 -4.9839 37 1 -1.2632 -8.1847 -3.1318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276879353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:00 Heat of formation + Delta-G solvation = 10.529111 kcal Electronic energy + Delta-G solvation = -21339.171381 eV Core-core repulsion = 17890.243132 eV Total energy + Delta-G solvation = -3448.928249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09353 -40.28011 -38.78027 -35.24548 -34.45035 -33.28096 -32.71742 -31.47417 -30.93721 -29.25946 -25.55826 -24.66409 -24.15068 -23.39427 -21.53309 -20.72793 -20.33488 -17.87352 -17.77068 -17.05318 -16.85855 -16.63614 -15.82378 -15.59272 -15.35362 -14.88941 -14.53404 -14.26954 -13.82291 -13.76034 -13.62791 -13.59023 -13.17474 -12.97606 -12.43939 -12.30018 -12.21221 -11.73372 -11.19187 -11.04685 -10.82995 -10.52801 -10.23885 -10.20561 -10.08167 -10.05179 -9.72849 -9.17401 -8.77155 -8.75494 -8.44207 -6.50322 -4.20986 0.03678 0.71203 1.72500 2.37570 2.61309 3.26068 3.31602 3.39493 3.42577 3.54117 3.58692 3.88998 4.05476 4.11652 4.31441 4.38404 4.44809 4.50443 4.56766 4.77320 4.84451 4.99599 5.15626 5.19586 5.27896 5.34982 5.56224 5.61401 6.03450 6.06552 6.09908 6.47810 6.57466 6.89934 7.13085 7.24075 7.38620 7.66533 7.99645 8.30549 8.32299 8.73276 9.50861 10.90847 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.002744 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.089521 B =10201.097833 C =11135.511687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 1.073 2.927 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.604 4.604 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.129 3.871 11 N -0.716 5.716 12 C 0.511 3.489 13 O -0.520 6.520 14 C 0.026 3.974 15 H 0.116 0.884 16 C -0.141 4.141 17 C 0.126 3.874 18 C -0.092 4.092 19 C -0.037 4.037 20 C -0.174 4.174 21 C 0.115 3.885 22 N -0.482 5.482 23 C 0.137 3.863 24 N -0.278 5.278 25 O -0.158 6.158 26 H 0.268 0.732 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.398 0.602 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -23.108 -6.343 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.072 0.928 9 C -0.037 4.037 10 C 0.007 3.993 11 N -0.368 5.368 12 C 0.293 3.707 13 O -0.396 6.396 14 C -0.037 4.037 15 H 0.133 0.867 16 C -0.181 4.181 17 C -0.064 4.064 18 C -0.095 4.095 19 C -0.065 4.065 20 C -0.194 4.194 21 C -0.042 4.042 22 N -0.189 5.189 23 C -0.023 4.023 24 N -0.017 5.017 25 O -0.178 6.178 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.965 -21.891 -6.382 23.336 hybrid contribution -0.061 -1.368 0.403 1.427 sum -5.027 -23.258 -5.978 24.535 Atomic orbital electron populations 1.70786 1.06888 1.30561 1.46298 1.25890 0.96474 1.02849 0.93389 0.83473 0.74716 0.74786 0.76910 1.21305 1.20893 1.21306 1.21898 0.94615 0.91279 1.56436 0.92769 1.19460 0.94814 0.92804 0.96662 1.21658 0.95790 0.80437 1.01400 1.46265 1.10510 1.06176 1.73884 1.19877 0.88213 0.84509 0.78062 1.90753 1.13386 1.87081 1.48353 1.23617 0.92056 0.88774 0.99214 0.86687 1.23004 1.04006 0.93128 0.97933 1.23987 0.94595 0.93781 0.94050 1.18824 0.98111 0.93752 0.98809 1.21842 0.97206 0.92591 0.94812 1.22170 0.97169 1.02030 0.97992 1.23029 0.94740 0.90238 0.96201 1.67784 1.26323 1.08252 1.16583 1.23039 0.89174 1.00391 0.89699 1.78425 1.07120 1.12672 1.03469 1.91410 1.37984 1.22733 1.65659 0.92145 0.96740 0.96738 0.92076 0.92041 0.76849 0.86489 0.86785 0.83718 0.83902 0.82079 0.81758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.69 13.65 55.43 0.76 -25.93 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 24.69 29.90 -169.99 -5.08 19.60 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.60 -16.55 9.11 -34.44 -0.31 -16.87 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.00 0.00 4.40 -27.89 -0.12 -0.12 16 10 C 0.13 2.63 5.61 -4.04 -0.02 2.61 16 11 N -0.72 -11.40 5.55 -60.29 -0.33 -11.74 16 12 C 0.51 8.42 7.14 -10.99 -0.08 8.35 16 13 O -0.52 -11.09 16.59 -13.29 -0.22 -11.31 16 14 C 0.03 0.32 4.23 -26.97 -0.11 0.21 16 15 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -1.31 5.83 -26.48 -0.15 -1.47 16 17 C 0.13 1.30 7.17 -79.42 -0.57 0.73 16 18 C -0.09 -0.79 5.89 -104.89 -0.62 -1.40 16 19 C -0.04 -0.28 9.82 -38.86 -0.38 -0.66 16 20 C -0.17 -0.98 10.10 -39.50 -0.40 -1.38 16 21 C 0.12 0.73 11.17 -17.48 -0.20 0.53 16 22 N -0.48 -4.14 10.35 -12.90 -0.13 -4.27 16 23 C 0.14 1.09 10.79 -17.11 -0.18 0.90 16 24 N -0.28 -3.70 12.19 35.30 0.43 -3.27 16 25 O -0.16 -2.49 11.82 -30.21 -0.36 -2.85 16 26 H 0.27 7.70 7.22 -40.82 -0.29 7.41 16 27 H 0.01 0.35 8.01 -51.92 -0.42 -0.07 16 28 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.40 5.06 8.47 -40.82 -0.35 4.71 16 32 H 0.12 0.66 7.96 -51.93 -0.41 0.25 16 33 H 0.11 1.10 7.90 -51.93 -0.41 0.68 16 34 H 0.15 1.02 7.92 -52.48 -0.42 0.61 16 35 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 36 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.17 0.96 7.39 -52.48 -0.39 0.57 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -35.46 329.25 -7.65 -43.10 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.42 Total: -0.15 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.25 Total: -8.16 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.72 Total: -45.21 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.58 Total: -14.16 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.46 -7.65 -43.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276879353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.634 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds