Wall clock time and date at job start Tue Mar 31 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99985 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99714 * 179.97438 * 12 11 10 15 15 H 1.08993 * 110.86194 * 301.20504 * 14 12 11 16 16 C 1.54737 * 110.97254 * 65.00373 * 14 12 11 17 17 C 1.51683 * 102.55491 * 142.33556 * 16 14 12 18 18 C 1.47640 * 125.87176 * 164.58563 * 17 16 14 19 19 C 1.40041 * 120.56685 * 179.97438 * 18 17 16 20 20 C 1.38356 * 118.28595 * 179.97438 * 19 18 17 21 21 C 1.38345 * 119.31006 * 0.02562 * 20 19 18 22 22 N 1.31911 * 121.09273 * 0.02562 * 21 20 19 23 23 C 1.31706 * 121.87893 * 359.68994 * 22 21 20 24 24 N 1.29090 * 108.26357 * 344.60659 * 17 16 14 25 25 O 1.41382 * 112.87568 * 359.68061 * 24 17 16 26 26 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 28 28 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 29 29 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 30 30 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 31 31 H 0.97001 * 119.99478 * 359.97438 * 11 10 9 32 32 H 1.09001 * 110.79160 * 260.60205 * 16 14 12 33 33 H 1.09002 * 110.79351 * 23.87621 * 16 14 12 34 34 H 1.08004 * 120.85725 * 359.96454 * 19 18 17 35 35 H 1.08003 * 120.34147 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.45457 * 179.97438 * 21 20 19 37 37 H 1.08006 * 119.71871 * 180.31049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1867 -6.0980 0.0031 13 8 3.3995 -6.0980 0.0027 14 6 1.4331 -7.4031 0.0043 15 1 0.7824 -7.4747 0.8757 16 6 0.6270 -7.5784 -1.3048 17 6 0.7716 -9.0621 -1.5849 18 6 -0.0487 -9.8486 -2.5274 19 6 0.1823 -11.2189 -2.7005 20 6 -0.6148 -11.9103 -3.5955 21 6 -1.6047 -11.2324 -4.2844 22 7 -1.7991 -9.9405 -4.1020 23 6 -1.0706 -9.2399 -3.2576 24 7 1.7350 -9.5192 -0.8573 25 8 2.3399 -8.5227 -0.0572 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6247 -2.5570 -0.8895 29 1 2.8725 -3.6047 -0.8878 30 1 2.8714 -3.6039 0.8921 31 1 0.5428 -4.9308 0.0024 32 1 -0.4194 -7.3134 -1.1533 33 1 1.0620 -6.9856 -2.1095 34 1 0.9627 -11.7231 -2.1498 35 1 -0.4659 -12.9681 -3.7545 36 1 -2.2280 -11.7697 -4.9839 37 1 -1.2632 -8.1847 -3.1318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276879353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:00 Heat of formation + Delta-G solvation = -14.302342 kcal Electronic energy + Delta-G solvation = -21340.248153 eV Core-core repulsion = 17890.243132 eV Total energy + Delta-G solvation = -3450.005022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99120 -41.02909 -40.00890 -36.92700 -35.30351 -35.11676 -33.31579 -32.63494 -31.61823 -30.87086 -26.92318 -25.64105 -25.22070 -24.21047 -23.27949 -21.85092 -21.30357 -19.22203 -18.56251 -18.50349 -17.76584 -17.45532 -17.02875 -16.62660 -16.48256 -16.10020 -15.64728 -15.43323 -15.18353 -14.88842 -14.48957 -14.42605 -14.21521 -14.11466 -13.97351 -13.71759 -13.13647 -12.98208 -12.86737 -12.31913 -12.10759 -12.00544 -11.90360 -11.71879 -11.14840 -10.79695 -10.65413 -10.58790 -10.58577 -10.25822 -9.89285 -8.71558 -6.42860 -0.58668 0.19930 1.01297 1.24780 1.39931 1.54787 1.62008 1.80618 2.17613 2.55584 2.70198 2.78152 3.13368 3.13741 3.19758 3.50247 3.53768 3.77339 3.79074 3.92071 4.09819 4.19818 4.26951 4.30156 4.38476 4.44935 4.64381 4.65196 4.75068 5.00792 5.01334 5.11086 5.30327 5.32272 5.58822 5.92522 6.02035 6.14463 6.35676 6.56502 6.86858 7.00450 7.35961 8.71402 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024404 B = 0.002744 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.089521 B =10201.097833 C =11135.511687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.029 4.029 3 Si 1.116 2.884 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.624 4.624 8 H 0.047 0.953 9 C 0.008 3.992 10 C 0.146 3.854 11 N -0.702 5.702 12 C 0.513 3.487 13 O -0.574 6.574 14 C 0.030 3.970 15 H 0.147 0.853 16 C -0.138 4.138 17 C 0.150 3.850 18 C -0.111 4.111 19 C -0.046 4.046 20 C -0.167 4.167 21 C 0.116 3.884 22 N -0.508 5.508 23 C 0.138 3.862 24 N -0.311 5.311 25 O -0.204 6.204 26 H 0.261 0.739 27 H 0.010 0.990 28 H 0.013 0.987 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.417 0.583 32 H 0.163 0.837 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.173 0.827 36 H 0.191 0.809 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -24.065 -7.367 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.228 4.228 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.663 4.663 8 H 0.066 0.934 9 C -0.030 4.030 10 C 0.023 3.977 11 N -0.355 5.355 12 C 0.298 3.702 13 O -0.453 6.453 14 C -0.032 4.032 15 H 0.164 0.836 16 C -0.177 4.177 17 C -0.040 4.040 18 C -0.115 4.115 19 C -0.073 4.073 20 C -0.186 4.186 21 C -0.040 4.040 22 N -0.216 5.216 23 C -0.022 4.022 24 N -0.054 5.054 25 O -0.220 6.220 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.254 0.746 32 H 0.180 0.820 33 H 0.132 0.868 34 H 0.162 0.838 35 H 0.191 0.809 36 H 0.207 0.793 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.512 -22.865 -7.397 24.898 hybrid contribution 0.323 -1.205 0.613 1.390 sum -6.189 -24.070 -6.784 25.762 Atomic orbital electron populations 1.70894 1.07672 1.30277 1.48088 1.27259 0.96624 1.06399 0.92532 0.82921 0.74118 0.71314 0.77838 1.19761 1.20603 1.19935 1.22328 0.94746 0.93166 1.56036 0.93430 1.19299 0.94865 0.92667 0.96130 1.21140 0.94913 0.81540 1.00114 1.45946 1.11299 1.04767 1.73497 1.20568 0.87716 0.85673 0.76223 1.90726 1.15978 1.87930 1.50702 1.23676 0.91570 0.85710 1.02238 0.83623 1.23119 1.06028 0.92436 0.96081 1.24334 0.92859 0.94308 0.92454 1.18860 0.98847 0.94226 0.99546 1.22034 0.97538 0.92507 0.95229 1.22477 0.96053 1.03380 0.96668 1.23592 0.94701 0.89751 0.95983 1.67850 1.27031 1.09472 1.17242 1.23303 0.88549 1.01231 0.89085 1.78475 1.09210 1.12099 1.05592 1.91375 1.39989 1.23896 1.66777 0.92904 0.97213 0.96881 0.93308 0.93568 0.74600 0.81974 0.86846 0.83847 0.80920 0.79259 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.65 21.45 0.29 -54.33 16 2 C -0.03 -1.64 5.46 84.65 0.46 -1.17 16 3 Si 1.12 49.06 29.90 68.60 2.05 51.11 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.62 -34.37 9.11 25.60 0.23 -34.14 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.01 0.37 4.40 29.85 0.13 0.50 16 10 C 0.15 6.03 5.61 86.38 0.48 6.51 16 11 N -0.70 -21.84 5.55 -463.05 -2.57 -24.41 16 12 C 0.51 16.83 7.14 87.66 0.63 17.46 16 13 O -0.57 -25.18 16.59 14.99 0.25 -24.93 16 14 C 0.03 0.72 4.23 30.44 0.13 0.85 16 15 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 16 C -0.14 -2.26 5.83 30.75 0.18 -2.08 16 17 C 0.15 2.89 7.17 45.76 0.33 3.22 16 18 C -0.11 -1.71 5.89 -20.04 -0.12 -1.83 16 19 C -0.05 -0.61 9.82 22.74 0.22 -0.39 16 20 C -0.17 -1.41 10.10 22.32 0.23 -1.18 16 21 C 0.12 1.12 11.17 84.71 0.95 2.07 16 22 N -0.51 -7.47 10.35 -194.72 -2.01 -9.48 16 23 C 0.14 1.86 10.79 85.03 0.92 2.78 16 24 N -0.31 -8.23 12.19 -42.23 -0.51 -8.74 16 25 O -0.20 -6.51 11.82 -20.28 -0.24 -6.75 16 26 H 0.26 15.08 7.22 -92.71 -0.67 14.41 16 27 H 0.01 0.46 8.01 -2.38 -0.02 0.45 16 28 H 0.01 0.62 8.01 -2.39 -0.02 0.60 16 29 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.42 9.82 8.47 -92.71 -0.79 9.04 16 32 H 0.16 1.18 7.96 -2.39 -0.02 1.16 16 33 H 0.11 1.97 7.90 -2.39 -0.02 1.95 16 34 H 0.14 1.90 7.92 -2.91 -0.02 1.88 16 35 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.18 1.59 7.39 -2.91 -0.02 1.57 16 Total: -1.00 -78.78 329.25 2.44 -76.34 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.42 Total: 8.58 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.77 Total: -7.40 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.81 Total: -96.96 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: 0.01 Total: -31.68 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -78.78 2.44 -76.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276879353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.039 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds