Wall clock time and date at job start Tue Mar 31 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33590 * 125.73615 * 2 1 4 4 C 1.34879 * 109.83271 * 180.31084 * 3 2 1 5 5 C 1.43197 * 125.76163 * 179.76702 * 4 3 2 6 6 N 4.69757 * 150.57778 * 359.52120 * 2 1 3 7 7 C 1.36106 * 108.47616 * 359.71929 * 4 3 2 8 8 C 1.36741 * 125.74098 * 179.83813 * 2 1 3 9 9 C 1.47477 * 126.69497 * 359.96916 * 8 2 1 10 10 O 1.21610 * 120.00458 * 29.45344 * 9 8 2 11 11 N 1.34774 * 120.00156 * 209.45071 * 9 8 2 12 12 C 1.46972 * 120.58943 * 358.10742 * 11 9 8 13 13 C 1.53371 * 108.63458 * 125.05016 * 12 11 9 14 14 N 1.46961 * 108.63609 * 49.41860 * 13 12 11 15 15 C 1.36937 * 120.59072 * 124.79861 * 14 13 12 16 16 H 1.08001 * 120.00010 * 331.34151 * 15 14 13 17 17 C 1.38811 * 120.00222 * 151.33937 * 15 14 13 18 18 N 1.31618 * 120.00264 * 161.78401 * 17 15 14 19 19 Si 1.86803 * 119.99966 * 341.78624 * 17 15 14 20 20 H 1.48502 * 109.47121 * 86.96180 * 19 17 15 21 21 H 1.48496 * 109.47396 * 206.96699 * 19 17 15 22 22 H 1.48503 * 109.46992 * 326.96930 * 19 17 15 23 23 C 1.46965 * 118.81694 * 304.77432 * 14 13 12 24 24 C 1.46962 * 120.59971 * 178.38462 * 11 9 8 25 25 H 1.08996 * 109.47643 * 270.15637 * 1 2 3 26 26 H 1.09003 * 109.47313 * 30.15851 * 1 2 3 27 27 H 1.09008 * 109.47258 * 150.15847 * 1 2 3 28 28 H 1.07997 * 126.71528 * 179.97438 * 7 4 3 29 29 H 1.09007 * 109.60699 * 244.78728 * 12 11 9 30 30 H 1.08996 * 109.61136 * 5.30020 * 12 11 9 31 31 H 1.09002 * 109.60890 * 289.67590 * 13 12 11 32 32 H 1.08994 * 109.61192 * 169.17000 * 13 12 11 33 33 H 0.97002 * 120.00124 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.60768 * 295.48663 * 23 14 13 35 35 H 1.08996 * 109.75315 * 175.05341 * 23 14 13 36 36 H 1.09001 * 109.60664 * 354.69695 * 24 11 9 37 37 H 1.09002 * 109.61086 * 115.20563 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2872 1.0844 0.0000 4 6 3.5843 0.7148 -0.0069 5 6 4.7075 1.6030 -0.0137 6 7 5.5986 2.3076 -0.0193 7 6 3.6454 -0.6449 -0.0051 8 6 2.3057 -1.1099 0.0031 9 6 1.8606 -2.5159 0.0077 10 8 0.8026 -2.8206 -0.5087 11 7 2.6265 -3.4633 0.5843 12 6 3.9265 -3.1165 1.1755 13 6 3.9442 -3.5918 2.6336 14 7 3.4970 -4.9911 2.6769 15 6 4.2775 -5.9545 3.2581 16 1 5.3518 -5.8440 3.2709 17 6 3.6880 -7.0730 3.8310 18 7 4.4078 -8.1501 4.0634 19 14 1.8729 -7.0497 4.2720 20 1 1.0712 -7.4593 3.0910 21 1 1.6232 -7.9930 5.3913 22 1 1.4813 -5.6778 4.6842 23 6 2.1969 -5.3378 2.0857 24 6 2.1794 -4.8626 0.6276 25 1 -0.3634 0.0028 1.0276 26 1 -0.3634 0.8886 -0.5163 27 1 -0.3634 -0.8915 -0.5114 28 1 4.5393 -1.2510 -0.0097 29 1 4.7243 -3.6100 0.6203 30 1 4.0676 -2.0362 1.1411 31 1 3.2709 -2.9741 3.2279 32 1 4.9569 -3.5190 3.0299 33 1 3.9958 -8.9319 4.4633 34 1 1.3993 -4.8444 2.6409 35 1 2.0529 -6.4177 2.1202 36 1 1.1666 -4.9354 0.2313 37 1 2.8527 -5.4803 0.0332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280560000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:57 Heat of formation + Delta-G solvation = 47.976187 kcal Electronic energy + Delta-G solvation = -22888.515201 eV Core-core repulsion = 19441.210779 eV Total energy + Delta-G solvation = -3447.304422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.12561 -40.97229 -38.62601 -37.86497 -35.87363 -34.72492 -33.45480 -33.15558 -32.18962 -29.36123 -28.41746 -25.76906 -25.31011 -24.07321 -23.05478 -22.24944 -21.42852 -19.37861 -18.57976 -17.93220 -17.74093 -17.01508 -16.96050 -16.56648 -16.11988 -15.95840 -15.48320 -15.13535 -14.79858 -14.75007 -14.68509 -14.49209 -14.32470 -14.04797 -13.91736 -13.76314 -13.68218 -13.43093 -12.89772 -12.71361 -12.47926 -12.23499 -11.96431 -11.76303 -11.58321 -11.21432 -11.00684 -10.70215 -9.93199 -9.65716 -8.84358 -8.15923 -5.51183 -0.21612 0.46217 0.74132 1.29591 1.42421 1.49835 1.71060 1.86079 2.02001 2.19405 2.40786 2.81997 3.07818 3.28638 3.40668 3.54635 3.85643 4.09276 4.10872 4.24735 4.29890 4.41068 4.46800 4.54547 4.57231 4.63916 4.66337 4.73259 4.85765 4.90524 4.95596 5.17617 5.19676 5.46058 5.65429 5.85959 6.11700 6.13096 6.42178 6.88365 7.07530 7.59172 7.99767 9.03605 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.004586 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.629421 B = 6104.195560 C = 6898.636681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.124 3.876 3 O -0.146 6.146 4 C 0.030 3.970 5 C 0.314 3.686 6 N -0.409 5.409 7 C -0.083 4.083 8 C -0.253 4.253 9 C 0.588 3.412 10 O -0.571 6.571 11 N -0.594 5.594 12 C 0.074 3.926 13 C 0.127 3.873 14 N -0.619 5.619 15 C -0.247 4.247 16 H 0.061 0.939 17 C -0.030 4.030 18 N -0.956 5.956 19 Si 0.943 3.057 20 H -0.268 1.268 21 H -0.313 1.313 22 H -0.269 1.269 23 C 0.108 3.892 24 C 0.108 3.892 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.200 0.800 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.262 0.738 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 18.006 -9.377 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 O -0.040 6.040 4 C -0.021 4.021 5 C -0.001 4.001 6 N -0.087 5.087 7 C -0.105 4.105 8 C -0.258 4.258 9 C 0.378 3.622 10 O -0.452 6.452 11 N -0.325 5.325 12 C -0.049 4.049 13 C 0.002 3.998 14 N -0.344 5.344 15 C -0.377 4.377 16 H 0.079 0.921 17 C -0.225 4.225 18 N -0.602 5.602 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.242 1.242 22 H -0.194 1.194 23 C -0.018 4.018 24 C -0.016 4.016 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.217 0.783 29 H 0.098 0.902 30 H 0.148 0.852 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.183 19.094 -9.572 22.236 hybrid contribution -0.730 -1.120 0.661 1.491 sum -6.913 17.974 -8.912 21.219 Atomic orbital electron populations 1.20906 0.81278 1.06632 1.06004 1.23458 0.95021 0.81692 0.93020 1.83972 1.14948 1.34467 1.70586 1.16005 0.79511 0.89481 1.17131 1.23359 0.91595 0.92077 0.93039 1.81393 1.10645 1.06465 1.10215 1.22405 0.98319 0.91934 0.97832 1.19906 0.94106 0.93659 1.18110 1.17443 0.83113 0.84157 0.77460 1.90723 1.24368 1.82455 1.47681 1.47872 1.20574 1.07907 1.56106 1.23098 0.83879 1.03286 0.94665 1.21545 0.99855 0.83581 0.94833 1.44424 1.19103 1.04638 1.66249 1.18890 0.90234 0.98834 1.29716 0.92133 1.25881 1.01308 0.96134 0.99216 1.69925 1.38187 1.03671 1.48385 0.86048 0.82435 0.77143 0.77124 1.19425 1.24171 1.19412 1.21784 0.87744 0.99336 0.92952 1.21990 1.01330 0.81179 0.97103 0.87332 0.87015 0.87880 0.78312 0.90195 0.85234 0.94669 0.90086 0.92926 0.95128 0.91516 0.88823 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.17 71.23 0.72 -0.43 16 2 C 0.12 2.11 7.36 25.33 0.19 2.30 16 3 O -0.15 -2.39 10.62 -1.55 -0.02 -2.41 16 4 C 0.03 0.48 7.04 23.02 0.16 0.64 16 5 C 0.31 5.70 15.87 88.33 1.40 7.10 16 6 N -0.41 -9.08 18.54 19.00 0.35 -8.72 16 7 C -0.08 -1.32 8.46 22.66 0.19 -1.13 16 8 C -0.25 -5.16 5.68 -20.31 -0.12 -5.28 16 9 C 0.59 15.99 7.56 86.68 0.66 16.65 16 10 O -0.57 -18.15 14.59 -4.06 -0.06 -18.21 16 11 N -0.59 -17.16 2.95 -821.80 -2.42 -19.58 16 12 C 0.07 1.85 5.75 86.41 0.50 2.34 16 13 C 0.13 4.20 6.67 86.42 0.58 4.78 16 14 N -0.62 -26.83 2.74 -698.22 -1.91 -28.74 16 15 C -0.25 -13.15 10.04 84.03 0.84 -12.30 16 16 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 17 C -0.03 -1.70 5.28 84.86 0.45 -1.25 16 18 N -0.96 -58.11 13.97 21.65 0.30 -57.80 16 19 Si 0.94 45.01 24.33 68.60 1.67 46.68 16 20 H -0.27 -11.90 6.36 99.48 0.63 -11.27 16 21 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 22 H -0.27 -12.51 6.88 99.48 0.68 -11.83 16 23 C 0.11 4.33 4.35 86.42 0.38 4.70 16 24 C 0.11 3.60 6.59 86.42 0.57 4.17 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 1.70 6.38 -2.38 -0.02 1.69 16 28 H 0.20 2.37 6.11 -2.91 -0.02 2.35 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.13 2.36 3.28 -2.39 -0.01 2.35 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 2.60 7.93 -2.39 -0.02 2.58 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.03 1.24 7.28 -2.39 -0.02 1.22 16 35 H 0.07 2.95 4.20 -2.39 -0.01 2.94 16 36 H 0.09 3.01 7.00 -2.39 -0.02 3.00 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -68.33 308.17 5.46 -62.87 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.03 Total: 3.62 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 6.52 Total: 22.30 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.68 Total: -114.84 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.08 Total: -20.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.68 kcal Total: -68.33 5.46 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280560000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.847 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds