Wall clock time and date at job start Tue Mar 31 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47511 * 339.24905 * 3 2 1 5 5 C 1.37094 * 119.99881 * 270.00475 * 4 3 2 6 6 H 1.08003 * 119.99624 * 202.67232 * 5 4 3 7 7 C 1.38955 * 120.00417 * 22.66587 * 5 4 3 8 8 N 1.31417 * 119.99759 * 352.44325 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 172.44194 * 7 5 4 10 10 H 1.48499 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47059 * 119.99840 * 9 7 5 12 12 H 1.48497 * 109.46971 * 240.00326 * 9 7 5 13 13 C 1.34773 * 119.99928 * 89.99945 * 4 3 2 14 14 O 1.21291 * 119.99854 * 5.10208 * 13 4 3 15 15 C 1.50702 * 119.99964 * 185.10829 * 13 4 3 16 16 N 1.46499 * 109.47074 * 174.90430 * 15 13 4 17 17 C 1.35863 * 119.93669 * 89.99955 * 16 15 13 18 18 C 1.50702 * 120.40589 * 0.02562 * 17 16 15 19 19 C 1.36027 * 119.18860 * 180.29481 * 17 16 15 20 20 C 1.39807 * 119.08278 * 359.46479 * 19 17 16 21 21 C 1.50703 * 120.08509 * 180.24636 * 20 19 17 22 22 N 1.31758 * 119.82968 * 0.53938 * 20 19 17 23 23 C 1.33528 * 120.81503 * 359.72614 * 22 20 19 24 24 O 1.21954 * 119.52232 * 180.02562 * 23 22 20 25 25 H 4.40644 * 5.51511 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46636 * 219.24915 * 3 2 1 27 27 H 1.08998 * 109.46803 * 99.25529 * 3 2 1 28 28 H 0.96992 * 119.99577 * 185.01623 * 8 7 5 29 29 H 1.08998 * 109.47461 * 54.89753 * 15 13 4 30 30 H 1.09000 * 109.46809 * 294.90472 * 15 13 4 31 31 H 1.08998 * 109.46726 * 90.00297 * 18 17 16 32 32 H 1.09000 * 109.47125 * 210.00294 * 18 17 16 33 33 H 1.08998 * 109.47390 * 330.00143 * 18 17 16 34 34 H 1.08001 * 120.45513 * 179.69935 * 19 17 16 35 35 H 1.08999 * 109.46893 * 180.29258 * 21 20 19 36 36 H 1.08996 * 109.47137 * 300.28965 * 21 20 19 37 37 H 1.08997 * 109.46876 * 60.29095 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2907 0.4894 5 6 3.3635 -1.4743 1.8286 6 1 4.0430 -2.2458 2.1596 7 6 2.7211 -0.6677 2.7601 8 7 2.0125 0.3636 2.3585 9 14 2.8647 -1.0495 4.5830 10 1 3.7128 -2.2538 4.7712 11 1 3.4828 0.1050 5.2833 12 1 1.5131 -1.3027 5.1436 13 6 3.3601 -2.2982 -0.3770 14 8 3.2470 -2.1090 -1.5697 15 6 3.7521 -3.6599 0.1362 16 7 3.8195 -4.6027 -0.9830 17 6 4.9864 -4.7714 -1.6582 18 6 6.2155 -3.9941 -1.2629 19 6 5.0302 -5.6463 -2.6988 20 6 3.8751 -6.3571 -3.0382 21 6 3.8998 -7.3363 -4.1834 22 7 2.7634 -6.1644 -2.3578 23 6 2.7250 -5.3001 -1.3407 24 8 1.6834 -5.1404 -0.7268 25 1 -1.0498 -0.0004 0.0003 26 1 3.0089 0.7967 0.6502 27 1 3.0092 0.1661 -1.0143 28 1 1.6244 0.9685 3.0099 29 1 3.0104 -4.0039 0.8570 30 1 4.7272 -3.5991 0.6193 31 1 6.7784 -4.5581 -0.5192 32 1 6.8388 -3.8284 -2.1416 33 1 5.9182 -3.0336 -0.8421 34 1 5.9457 -5.7927 -3.2527 35 1 2.9134 -7.7855 -4.2987 36 1 4.1711 -6.8150 -5.1014 37 1 4.6327 -8.1166 -3.9785 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281893843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:59 Heat of formation + Delta-G solvation = 25.525353 kcal Electronic energy + Delta-G solvation = -23192.990873 eV Core-core repulsion = 19744.712910 eV Total energy + Delta-G solvation = -3448.277963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.92644 -40.55812 -38.49646 -37.53383 -36.75383 -33.82349 -33.51015 -33.20658 -31.51965 -29.92688 -28.57311 -27.51702 -26.19035 -24.13966 -22.90273 -21.39104 -19.97173 -19.45098 -18.81432 -18.54567 -17.68166 -17.17293 -17.01828 -16.23998 -16.20506 -15.97606 -15.02205 -14.87319 -14.81789 -14.52745 -14.46264 -14.18569 -13.98005 -13.94077 -13.35376 -13.21844 -12.99624 -12.98967 -12.91992 -12.64145 -12.36879 -12.08329 -11.95364 -11.72193 -11.49965 -11.23261 -10.68770 -10.64433 -10.50562 -9.96474 -9.44632 -8.28820 -6.07429 -0.30731 0.67773 1.27901 1.38130 1.46971 1.58353 1.72538 1.99318 2.25750 2.35004 2.67922 3.02668 3.07107 3.21288 3.31880 3.65638 3.80890 3.86416 4.08323 4.23310 4.31555 4.43139 4.55623 4.64754 4.67233 4.74343 4.85921 4.91242 4.99465 5.05462 5.22072 5.32402 5.34611 5.48277 5.57970 5.66481 6.27458 6.76850 6.98254 7.03706 7.12110 7.34627 7.74604 8.64777 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.005107 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.107438 B = 5481.859499 C = 5825.816278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.135 4.135 3 C 0.242 3.758 4 N -0.440 5.440 5 C -0.365 4.365 6 H 0.123 0.877 7 C 0.000 4.000 8 N -0.881 5.881 9 Si 0.994 3.006 10 H -0.249 1.249 11 H -0.272 1.272 12 H -0.294 1.294 13 C 0.440 3.560 14 O -0.628 6.628 15 C 0.099 3.901 16 N -0.496 5.496 17 C 0.211 3.789 18 C -0.128 4.128 19 C -0.288 4.288 20 C 0.260 3.740 21 C -0.109 4.109 22 N -0.605 5.605 23 C 0.620 3.380 24 O -0.603 6.603 25 H 0.230 0.770 26 H 0.120 0.880 27 H 0.059 0.941 28 H 0.272 0.728 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.210 0.790 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.541 -9.499 -5.927 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.157 5.157 5 C -0.491 4.491 6 H 0.140 0.860 7 C -0.204 4.204 8 N -0.518 5.518 9 Si 0.817 3.183 10 H -0.172 1.172 11 H -0.197 1.197 12 H -0.220 1.220 13 C 0.229 3.771 14 O -0.517 6.517 15 C -0.027 4.027 16 N -0.209 5.209 17 C 0.093 3.907 18 C -0.185 4.185 19 C -0.312 4.312 20 C 0.103 3.897 21 C -0.166 4.166 22 N -0.343 5.343 23 C 0.323 3.677 24 O -0.483 6.483 25 H 0.247 0.753 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.784 -9.429 -5.943 16.961 hybrid contribution -0.529 0.889 1.342 1.694 sum 12.255 -8.541 -4.602 15.630 Atomic orbital electron populations 1.25112 0.96519 1.01369 1.06462 1.23670 0.95405 0.99172 0.95431 1.18243 0.83982 0.88122 0.97698 1.43836 1.55350 1.09018 1.07472 1.20169 1.27128 1.21979 0.79844 0.86001 1.26283 0.93765 0.95446 1.04889 1.70091 1.32348 1.13671 1.35679 0.84851 0.77701 0.79254 0.76481 1.17228 1.19678 1.22042 1.20623 0.83645 0.86674 0.86182 1.90542 1.60174 1.83853 1.17121 1.21605 1.06787 0.86390 0.87895 1.46050 1.11199 1.34353 1.29269 1.22102 0.87499 0.91912 0.89162 1.21385 0.91696 0.98920 1.06468 1.21742 1.03041 1.04081 1.02372 1.23100 0.87069 0.88856 0.90702 1.21109 1.05200 0.96972 0.93288 1.69728 1.30262 1.22957 1.11374 1.18434 0.83340 0.81220 0.84695 1.90912 1.30558 1.70179 1.56637 0.75326 0.86270 0.92262 0.91788 0.87992 0.82904 0.85168 0.85168 0.91810 0.77317 0.91167 0.86513 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.60 19.25 74.32 1.43 -12.17 16 2 C -0.14 -7.19 11.37 31.13 0.35 -6.84 16 3 C 0.24 12.33 5.21 84.58 0.44 12.77 16 4 N -0.44 -22.18 2.58 -645.41 -1.67 -23.85 16 5 C -0.36 -17.44 9.01 84.04 0.76 -16.68 16 6 H 0.12 5.10 6.71 -2.91 -0.02 5.08 16 7 C 0.00 -0.02 5.40 84.93 0.46 0.44 16 8 N -0.88 -45.03 8.37 21.67 0.18 -44.85 16 9 Si 0.99 38.15 29.56 68.60 2.03 40.18 16 10 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 11 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 12 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.44 21.61 7.22 87.66 0.63 22.24 16 14 O -0.63 -34.39 15.97 -3.06 -0.05 -34.44 16 15 C 0.10 3.99 3.75 85.63 0.32 4.31 16 16 N -0.50 -19.19 2.09 -646.73 -1.35 -20.55 16 17 C 0.21 5.62 6.66 41.42 0.28 5.90 16 18 C -0.13 -2.16 9.14 71.24 0.65 -1.51 16 19 C -0.29 -5.98 9.44 22.14 0.21 -5.77 16 20 C 0.26 6.86 6.84 42.95 0.29 7.15 16 21 C -0.11 -1.58 10.19 71.24 0.73 -0.85 16 22 N -0.60 -24.38 10.39 -313.20 -3.25 -27.64 16 23 C 0.62 29.27 8.34 179.49 1.50 30.77 16 24 O -0.60 -34.76 16.74 -5.17 -0.09 -34.85 16 25 H 0.23 9.17 7.80 -4.43 -0.03 9.14 16 26 H 0.12 6.07 6.29 -2.39 -0.02 6.06 16 27 H 0.06 2.97 7.36 -2.39 -0.02 2.95 16 28 H 0.27 13.28 8.32 -92.71 -0.77 12.51 16 29 H 0.10 4.61 7.28 -2.39 -0.02 4.59 16 30 H 0.15 4.59 6.17 -2.39 -0.01 4.58 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.06 1.46 6.31 -2.39 -0.02 1.45 16 34 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -85.81 323.77 4.94 -80.87 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.10 Total: 25.37 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 8.05 Total: 39.76 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -6.09 Total: -116.88 kcal Atomic # 8 Polarization: -69.16 SS G_CDS: -0.14 Total: -69.29 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -85.81 4.94 -80.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281893843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.394 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds