Wall clock time and date at job start Tue Mar 31 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 48.67204 * 3 2 1 5 5 C 1.37097 * 119.99576 * 264.13021 * 4 3 2 6 6 H 1.07998 * 120.00241 * 197.43514 * 5 4 3 7 7 C 1.38952 * 120.00016 * 17.43836 * 5 4 3 8 8 N 1.31412 * 120.00337 * 21.52678 * 7 5 4 9 9 Si 1.86802 * 120.00005 * 201.53566 * 7 5 4 10 10 H 1.48504 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47281 * 119.99541 * 9 7 5 12 12 H 1.48500 * 109.47124 * 239.99849 * 9 7 5 13 13 C 1.34767 * 120.00056 * 84.13525 * 4 3 2 14 14 O 1.21300 * 119.99892 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00411 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47493 * 179.97438 * 15 13 4 17 17 C 1.50697 * 109.47493 * 180.02562 * 16 15 13 18 18 O 1.21311 * 119.99830 * 0.02562 * 17 16 15 19 19 C 1.46668 * 120.00164 * 180.02562 * 17 16 15 20 20 C 1.41552 * 126.47524 * 359.97438 * 19 17 16 21 21 N 1.30370 * 107.98286 * 180.02562 * 20 19 17 22 22 N 1.39910 * 109.00910 * 359.74619 * 21 20 19 23 23 C 1.46499 * 125.70913 * 180.29710 * 22 21 20 24 24 C 1.34129 * 108.58831 * 0.42940 * 22 21 20 25 25 H 4.40643 * 5.51427 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47301 * 288.66265 * 3 2 1 27 27 H 1.09007 * 109.46422 * 168.67105 * 3 2 1 28 28 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46872 * 60.00255 * 15 13 4 30 30 H 1.08998 * 109.47408 * 300.00081 * 15 13 4 31 31 H 1.09008 * 109.46871 * 59.99860 * 16 15 13 32 32 H 1.08999 * 109.47482 * 300.00290 * 16 15 13 33 33 H 1.07993 * 126.00937 * 0.02562 * 20 19 17 34 34 H 1.09002 * 109.46695 * 270.15651 * 23 22 21 35 35 H 1.09001 * 109.47316 * 30.15363 * 23 22 21 36 36 H 1.08993 * 109.47190 * 150.15693 * 23 22 21 37 37 H 1.08003 * 126.31697 * 179.85114 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9112 -1.0372 5 6 3.4783 -2.1980 -0.7121 6 1 4.0911 -2.7798 -1.3848 7 6 3.0380 -2.7539 0.4829 8 7 1.9864 -2.2540 1.0920 9 14 3.9412 -4.2116 1.2237 10 1 5.0833 -4.5824 0.3499 11 1 4.4466 -3.8477 2.5717 12 1 3.0115 -5.3639 1.3379 13 6 3.2468 -0.4851 -2.3108 14 8 3.6519 -1.2401 -3.1695 15 6 2.8687 0.9292 -2.6683 16 6 3.0887 1.1530 -4.1658 17 6 2.7113 2.5675 -4.5231 18 8 2.3065 3.3226 -3.6643 19 6 2.8333 3.0312 -5.9092 20 6 3.2877 2.2715 -7.0138 21 7 3.2514 3.0352 -8.0697 22 7 2.7749 4.2984 -7.7025 23 6 2.5825 5.4355 -8.6058 24 6 2.5264 4.2950 -6.3844 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.3280 0.9736 27 1 3.0088 1.0086 -0.2019 28 1 1.6792 -2.6418 1.9264 29 1 3.4883 1.6249 -2.1025 30 1 1.8194 1.0972 -2.4258 31 1 2.4695 0.4572 -4.7320 32 1 4.1382 0.9852 -4.4079 33 1 3.6080 1.2406 -6.9866 34 1 3.4982 6.0254 -8.6474 35 1 2.3402 5.0700 -9.6037 36 1 1.7662 6.0573 -8.2384 37 1 2.1516 5.1237 -5.8020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281912380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:39 Heat of formation + Delta-G solvation = 72.720779 kcal Electronic energy + Delta-G solvation = -21831.895559 eV Core-core repulsion = 18385.664143 eV Total energy + Delta-G solvation = -3446.231416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45753 -39.07554 -38.22940 -35.16548 -33.72393 -32.44899 -31.73191 -31.13126 -30.50485 -27.82771 -26.46941 -25.60896 -23.94490 -22.16706 -21.05710 -19.42445 -18.66195 -17.79493 -17.39944 -16.52900 -16.07962 -15.90979 -15.22626 -15.15856 -14.65120 -14.60323 -14.08157 -13.98721 -13.92142 -13.16817 -13.12492 -12.82923 -12.72006 -12.36713 -12.11990 -11.84596 -11.54424 -11.29613 -11.05913 -10.95097 -10.63380 -10.42729 -10.25298 -9.80392 -9.45676 -9.28123 -9.21076 -8.83568 -8.81899 -8.34999 -7.80992 -6.28312 -3.80455 1.24530 1.94800 2.13881 3.16955 3.21872 3.28889 3.35549 3.74280 3.97572 4.04369 4.13854 4.23787 4.47016 4.55329 4.72561 4.89331 4.99514 5.07711 5.13230 5.24128 5.30970 5.43700 5.56169 5.64792 5.86760 6.06426 6.15852 6.32392 6.40857 6.49660 6.52653 6.57437 6.82344 7.10463 7.35018 7.61141 7.84058 8.11074 8.47708 8.89093 9.18757 9.42060 9.97200 10.72591 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032059 B = 0.003244 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.192314 B = 8627.954409 C = 9275.999627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.862 5.862 9 Si 0.919 3.081 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.451 3.549 14 O -0.588 6.588 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.430 3.570 18 O -0.474 6.474 19 C -0.317 4.317 20 C 0.097 3.903 21 N -0.305 5.305 22 N -0.367 5.367 23 C 0.096 3.904 24 C 0.121 3.879 25 H 0.198 0.802 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.198 0.802 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 14.932 -11.867 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.113 4.113 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.500 5.500 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.240 3.760 14 O -0.473 6.473 15 C -0.163 4.163 16 C -0.177 4.177 17 C 0.308 3.692 18 O -0.350 6.350 19 C -0.330 4.330 20 C -0.090 4.090 21 N -0.125 5.125 22 N -0.146 5.146 23 C -0.045 4.045 24 C -0.030 4.030 25 H 0.215 0.785 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.214 0.786 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.104 15.096 -13.027 19.940 hybrid contribution -0.245 -0.808 1.391 1.627 sum -0.141 14.288 -11.636 18.428 Atomic orbital electron populations 1.24247 0.95365 1.05179 1.03345 1.23170 0.94361 0.96039 0.97688 1.18275 0.84298 0.91691 0.94988 1.43713 1.55882 1.11257 1.05089 1.19699 1.30095 0.89687 1.04680 0.87789 1.25287 0.95205 0.98992 0.97911 1.70109 1.19767 1.42126 1.18004 0.85984 0.79736 0.80817 0.78873 1.19233 1.20669 1.20986 1.20073 0.84114 0.89277 0.82532 1.90504 1.51423 1.57763 1.47565 1.21351 1.03393 0.96194 0.95326 1.21638 1.04582 0.93792 0.97684 1.21668 0.72599 0.89653 0.85241 1.90508 1.36407 1.57386 1.50702 1.21098 1.19361 0.95026 0.97528 1.24330 0.95761 1.00036 0.88914 1.77165 1.21558 0.89839 1.23896 1.48445 1.48719 1.10846 1.06566 1.21977 1.03030 0.85100 0.94351 1.23242 0.95919 0.99063 0.84750 0.78455 0.87335 0.91782 0.92258 0.90050 0.89670 0.87933 0.87924 0.78550 0.90278 0.88878 0.89105 0.79651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.64 19.25 29.55 0.57 -5.07 16 2 C -0.11 -2.56 10.88 -37.12 -0.40 -2.97 16 3 C 0.23 5.23 4.91 -6.83 -0.03 5.20 16 4 N -0.44 -11.23 2.60 -117.93 -0.31 -11.53 16 5 C -0.31 -8.67 9.33 -14.93 -0.14 -8.81 16 6 H 0.10 3.01 7.38 -52.49 -0.39 2.62 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.86 -22.86 9.48 55.50 0.53 -22.33 16 9 Si 0.92 20.55 29.60 -169.99 -5.03 15.52 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.45 10.85 7.56 -10.99 -0.08 10.77 16 14 O -0.59 -15.69 15.63 5.54 0.09 -15.61 16 15 C -0.12 -2.33 3.59 -27.88 -0.10 -2.43 16 16 C -0.14 -2.22 4.47 -27.88 -0.12 -2.34 16 17 C 0.43 6.36 7.13 -30.91 -0.22 6.14 16 18 O -0.47 -8.09 16.53 5.53 0.09 -8.00 16 19 C -0.32 -4.01 6.11 -105.15 -0.64 -4.65 16 20 C 0.10 1.15 11.55 -16.91 -0.20 0.96 16 21 N -0.30 -3.71 12.49 30.90 0.39 -3.32 16 22 N -0.37 -3.59 3.97 -67.52 -0.27 -3.86 16 23 C 0.10 0.47 11.44 59.85 0.68 1.15 16 24 C 0.12 1.26 11.30 -16.47 -0.19 1.08 16 25 H 0.20 3.48 7.80 -54.10 -0.42 3.05 16 26 H 0.11 2.57 6.44 -51.93 -0.33 2.24 16 27 H 0.06 1.24 6.69 -51.93 -0.35 0.89 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.08 1.44 7.37 -51.93 -0.38 1.06 16 30 H 0.08 1.67 7.46 -51.93 -0.39 1.28 16 31 H 0.10 1.62 8.10 -51.92 -0.42 1.20 16 32 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 33 H 0.20 1.91 8.04 -52.49 -0.42 1.49 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.19 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -34.83 332.18 -4.82 -39.65 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.35 Total: 4.75 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.96 Total: -0.27 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.34 Total: -41.05 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.18 Total: -23.61 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.83 -4.82 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281912380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.367 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds