Wall clock time and date at job start Tue Mar 31 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 48.67204 * 3 2 1 5 5 C 1.37097 * 119.99576 * 264.13021 * 4 3 2 6 6 H 1.07998 * 120.00241 * 197.43514 * 5 4 3 7 7 C 1.38952 * 120.00016 * 17.43836 * 5 4 3 8 8 N 1.31412 * 120.00337 * 21.52678 * 7 5 4 9 9 Si 1.86802 * 120.00005 * 201.53566 * 7 5 4 10 10 H 1.48504 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47281 * 119.99541 * 9 7 5 12 12 H 1.48500 * 109.47124 * 239.99849 * 9 7 5 13 13 C 1.34767 * 120.00056 * 84.13525 * 4 3 2 14 14 O 1.21300 * 119.99892 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00411 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47493 * 179.97438 * 15 13 4 17 17 C 1.50697 * 109.47493 * 180.02562 * 16 15 13 18 18 O 1.21311 * 119.99830 * 0.02562 * 17 16 15 19 19 C 1.46668 * 120.00164 * 180.02562 * 17 16 15 20 20 C 1.41552 * 126.47524 * 359.97438 * 19 17 16 21 21 N 1.30370 * 107.98286 * 180.02562 * 20 19 17 22 22 N 1.39910 * 109.00910 * 359.74619 * 21 20 19 23 23 C 1.46499 * 125.70913 * 180.29710 * 22 21 20 24 24 C 1.34129 * 108.58831 * 0.42940 * 22 21 20 25 25 H 4.40643 * 5.51427 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47301 * 288.66265 * 3 2 1 27 27 H 1.09007 * 109.46422 * 168.67105 * 3 2 1 28 28 H 0.97000 * 120.00497 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46872 * 60.00255 * 15 13 4 30 30 H 1.08998 * 109.47408 * 300.00081 * 15 13 4 31 31 H 1.09008 * 109.46871 * 59.99860 * 16 15 13 32 32 H 1.08999 * 109.47482 * 300.00290 * 16 15 13 33 33 H 1.07993 * 126.00937 * 0.02562 * 20 19 17 34 34 H 1.09002 * 109.46695 * 270.15651 * 23 22 21 35 35 H 1.09001 * 109.47316 * 30.15363 * 23 22 21 36 36 H 1.08993 * 109.47190 * 150.15693 * 23 22 21 37 37 H 1.08003 * 126.31697 * 179.85114 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9112 -1.0372 5 6 3.4783 -2.1980 -0.7121 6 1 4.0911 -2.7798 -1.3848 7 6 3.0380 -2.7539 0.4829 8 7 1.9864 -2.2540 1.0920 9 14 3.9412 -4.2116 1.2237 10 1 5.0833 -4.5824 0.3499 11 1 4.4466 -3.8477 2.5717 12 1 3.0115 -5.3639 1.3379 13 6 3.2468 -0.4851 -2.3108 14 8 3.6519 -1.2401 -3.1695 15 6 2.8687 0.9292 -2.6683 16 6 3.0887 1.1530 -4.1658 17 6 2.7113 2.5675 -4.5231 18 8 2.3065 3.3226 -3.6643 19 6 2.8333 3.0312 -5.9092 20 6 3.2877 2.2715 -7.0138 21 7 3.2514 3.0352 -8.0697 22 7 2.7749 4.2984 -7.7025 23 6 2.5825 5.4355 -8.6058 24 6 2.5264 4.2950 -6.3844 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.3280 0.9736 27 1 3.0088 1.0086 -0.2019 28 1 1.6792 -2.6418 1.9264 29 1 3.4883 1.6249 -2.1025 30 1 1.8194 1.0972 -2.4258 31 1 2.4695 0.4572 -4.7320 32 1 4.1382 0.9852 -4.4079 33 1 3.6080 1.2406 -6.9866 34 1 3.4982 6.0254 -8.6474 35 1 2.3402 5.0700 -9.6037 36 1 1.7662 6.0573 -8.2384 37 1 2.1516 5.1237 -5.8020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281912380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:38 Heat of formation + Delta-G solvation = 50.737556 kcal Electronic energy + Delta-G solvation = -21832.848823 eV Core-core repulsion = 18385.664143 eV Total energy + Delta-G solvation = -3447.184680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30455 -40.66968 -39.69495 -37.08207 -34.49445 -34.16460 -33.32864 -32.98887 -31.42385 -28.82237 -28.14086 -27.07444 -25.52551 -23.28062 -21.88505 -20.70664 -20.17597 -19.64525 -18.58722 -18.25164 -17.65425 -16.86861 -16.58456 -16.40553 -16.11225 -15.79348 -15.50909 -15.48502 -15.28380 -14.47980 -14.22348 -13.92818 -13.77773 -13.63494 -13.46541 -13.43970 -13.34601 -12.87591 -12.64099 -12.41224 -12.11705 -12.03353 -11.95944 -11.15213 -11.06267 -10.63267 -10.61654 -10.59090 -10.27677 -9.79440 -9.70644 -8.28473 -5.88734 0.32748 1.02948 1.37529 1.44886 1.49427 1.58349 1.92570 2.16868 2.20033 2.35760 2.41451 2.96581 3.08666 3.39792 3.78310 3.83671 3.92134 3.95861 4.19338 4.20025 4.27328 4.41088 4.43414 4.60113 4.61218 4.70374 4.80664 4.96359 4.99648 5.03447 5.13477 5.44232 5.44619 5.51180 5.87883 6.09510 6.47581 6.49667 6.72400 7.16108 7.18413 7.46539 8.02845 8.70456 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032059 B = 0.003244 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.192314 B = 8627.954409 C = 9275.999627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.153 4.153 3 C 0.234 3.766 4 N -0.455 5.455 5 C -0.351 4.351 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.874 5.874 9 Si 0.984 3.016 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.282 1.282 13 C 0.442 3.558 14 O -0.623 6.623 15 C -0.109 4.109 16 C -0.135 4.135 17 C 0.442 3.558 18 O -0.501 6.501 19 C -0.346 4.346 20 C 0.094 3.906 21 N -0.330 5.330 22 N -0.361 5.361 23 C 0.085 3.915 24 C 0.136 3.864 25 H 0.233 0.767 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.207 0.793 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 16.459 -12.153 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.154 4.154 3 C 0.111 3.889 4 N -0.173 5.173 5 C -0.478 4.478 6 H 0.096 0.904 7 C -0.203 4.203 8 N -0.511 5.511 9 Si 0.808 3.192 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.233 3.767 14 O -0.510 6.510 15 C -0.149 4.149 16 C -0.173 4.173 17 C 0.323 3.677 18 O -0.380 6.380 19 C -0.359 4.359 20 C -0.093 4.093 21 N -0.150 5.150 22 N -0.139 5.139 23 C -0.054 4.054 24 C -0.017 4.017 25 H 0.249 0.751 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.224 0.776 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.501 16.651 -13.331 21.336 hybrid contribution -0.118 -1.224 1.405 1.867 sum -0.619 15.427 -11.926 19.509 Atomic orbital electron populations 1.25130 0.96372 1.03538 1.01606 1.23477 0.95060 0.97583 0.99294 1.18299 0.84596 0.92463 0.93531 1.43926 1.56026 1.11091 1.06211 1.19619 1.31520 0.91087 1.05582 0.90440 1.25987 0.95463 1.01353 0.97449 1.70199 1.19982 1.42905 1.17986 0.85028 0.78268 0.77597 0.78286 1.19756 1.19124 1.20767 1.20915 0.82971 0.90975 0.81860 1.90465 1.52808 1.59270 1.48460 1.21240 1.03107 0.92866 0.97650 1.21599 1.05084 0.95141 0.95472 1.21474 0.71641 0.88495 0.86063 1.90496 1.38164 1.57721 1.51618 1.20932 1.21979 0.96527 0.96414 1.24536 0.95446 1.00636 0.88694 1.77122 1.22468 0.91102 1.24307 1.48848 1.47040 1.10993 1.07013 1.22421 1.05038 0.84012 0.93955 1.23636 0.94144 0.98841 0.85100 0.75088 0.88885 0.88793 0.91910 0.88613 0.90045 0.88137 0.87329 0.77622 0.88705 0.88412 0.86157 0.76945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.29 19.25 74.32 1.43 -8.85 16 2 C -0.15 -6.99 10.88 31.13 0.34 -6.65 16 3 C 0.23 10.66 4.91 84.57 0.42 11.07 16 4 N -0.45 -23.65 2.60 -645.42 -1.68 -25.33 16 5 C -0.35 -19.91 9.33 84.04 0.78 -19.12 16 6 H 0.08 4.71 7.38 -2.91 -0.02 4.68 16 7 C 0.00 0.03 4.87 84.93 0.41 0.45 16 8 N -0.87 -46.23 9.48 21.66 0.21 -46.03 16 9 Si 0.98 42.40 29.60 68.60 2.03 44.44 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 13 C 0.44 21.78 7.56 87.66 0.66 22.44 16 14 O -0.62 -34.38 15.63 -3.09 -0.05 -34.43 16 15 C -0.11 -4.14 3.59 29.85 0.11 -4.03 16 16 C -0.14 -4.30 4.47 29.85 0.13 -4.17 16 17 C 0.44 12.77 7.13 27.89 0.20 12.97 16 18 O -0.50 -16.64 16.53 -3.12 -0.05 -16.69 16 19 C -0.35 -8.33 6.11 -20.21 -0.12 -8.45 16 20 C 0.09 2.16 11.55 85.73 0.99 3.15 16 21 N -0.33 -7.60 12.49 -56.14 -0.70 -8.30 16 22 N -0.36 -6.22 3.97 -367.52 -1.46 -7.68 16 23 C 0.08 0.57 11.44 127.77 1.46 2.03 16 24 C 0.14 2.51 11.30 84.39 0.95 3.47 16 25 H 0.23 7.51 7.80 -4.42 -0.03 7.47 16 26 H 0.09 4.47 6.44 -2.39 -0.02 4.46 16 27 H 0.09 3.60 6.69 -2.38 -0.02 3.58 16 28 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.10 3.35 7.37 -2.39 -0.02 3.33 16 30 H 0.08 3.19 7.46 -2.39 -0.02 3.17 16 31 H 0.10 3.23 8.10 -2.38 -0.02 3.21 16 32 H 0.11 3.31 8.10 -2.39 -0.02 3.29 16 33 H 0.21 3.99 8.04 -2.91 -0.02 3.97 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -75.86 332.18 7.15 -68.71 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.08 Total: 21.01 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.77 Total: 4.29 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.63 Total: -87.34 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.10 Total: -51.12 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.44 kcal Total: -75.86 7.15 -68.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281912380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.451 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds