Wall clock time and date at job start Tue Mar 31 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37105 * 120.00275 * 2 1 4 4 H 1.07992 * 120.00078 * 204.38960 * 3 2 1 5 5 C 1.38951 * 119.99337 * 24.39064 * 3 2 1 6 6 N 1.31411 * 120.00472 * 12.64539 * 5 3 2 7 7 Si 1.86809 * 119.99562 * 192.64664 * 5 3 2 8 8 H 1.48492 * 109.46992 * 59.99864 * 7 5 3 9 9 H 1.48496 * 109.47076 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46555 * 299.99850 * 7 5 3 11 11 C 1.34783 * 120.00205 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00070 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99660 * 0.02562 * 11 2 1 14 14 N 1.46497 * 109.46969 * 180.02562 * 13 11 2 15 15 C 1.39285 * 125.81586 * 89.99636 * 14 13 11 16 16 C 1.38660 * 133.33803 * 0.02697 * 15 14 13 17 17 C 1.38112 * 119.85158 * 179.97438 * 16 15 14 18 18 C 1.38446 * 120.27981 * 0.02562 * 17 16 15 19 19 C 1.38100 * 120.28305 * 359.73033 * 18 17 16 20 20 C 1.38658 * 119.85261 * 0.48908 * 19 18 17 21 21 N 1.39294 * 133.33529 * 179.84976 * 20 19 18 22 22 C 1.46498 * 125.81619 * 359.68113 * 21 20 19 23 23 C 1.34632 * 125.81757 * 270.00284 * 14 13 11 24 24 O 1.21685 * 125.16536 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47368 * 265.86721 * 1 2 3 26 26 H 1.08996 * 109.46831 * 25.86852 * 1 2 3 27 27 H 1.09002 * 109.46962 * 145.86591 * 1 2 3 28 28 H 0.97000 * 120.00149 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.46987 * 59.99815 * 13 11 2 30 30 H 1.08997 * 109.46896 * 300.00032 * 13 11 2 31 31 H 1.07996 * 120.07701 * 359.94965 * 16 15 14 32 32 H 1.07995 * 119.86056 * 179.97438 * 17 16 15 33 33 H 1.08000 * 119.85769 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.07246 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47695 * 89.99694 * 22 21 20 36 36 H 1.09000 * 109.46884 * 210.00176 * 22 21 20 37 37 H 1.09003 * 109.47431 * 329.99520 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5487 2.3369 0.4970 6 7 0.4345 2.2491 1.1881 7 14 2.3236 4.0074 0.1825 8 1 2.4040 4.2482 -1.2806 9 1 1.4939 5.0647 0.8139 10 1 3.6894 4.0368 0.7648 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0017 14 7 2.3374 -3.5858 -0.0014 15 6 2.8662 -4.2058 1.1281 16 6 2.6953 -4.0083 2.4899 17 6 3.3748 -4.8048 3.3907 18 6 4.2261 -5.7991 2.9396 19 6 4.3989 -6.0065 1.5853 20 6 3.7245 -5.2089 0.6734 21 7 3.6905 -5.1672 -0.7185 22 6 4.4416 -6.0433 -1.6210 23 6 2.8502 -4.1842 -1.0930 24 8 2.5939 -3.8819 -2.2435 25 1 -0.3634 -0.0741 1.0249 26 1 -0.3633 0.9247 -0.4484 27 1 -0.3633 -0.8506 -0.5767 28 1 0.0146 3.0517 1.5353 29 1 0.7591 -2.5294 -0.8919 30 1 0.7584 -2.5306 0.8880 31 1 2.0327 -3.2332 2.8455 32 1 3.2421 -4.6509 4.4513 33 1 4.7544 -6.4177 3.6500 34 1 5.0635 -6.7834 1.2372 35 1 3.8474 -6.9290 -1.8458 36 1 4.6622 -5.5094 -2.5454 37 1 5.3744 -6.3433 -1.1434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299544141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:16 Heat of formation + Delta-G solvation = -7.538675 kcal Electronic energy + Delta-G solvation = -23072.719772 eV Core-core repulsion = 19623.008045 eV Total energy + Delta-G solvation = -3449.711727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.51555 -40.40876 -39.33346 -37.04548 -36.90880 -36.29834 -33.78143 -31.48910 -31.29280 -29.43566 -28.35542 -27.45900 -26.01055 -23.49457 -23.40032 -22.19365 -20.70303 -19.01562 -18.94127 -18.49869 -18.23443 -17.36770 -17.11813 -16.59058 -16.34502 -16.20148 -15.61432 -15.31718 -14.99957 -14.93434 -14.65080 -14.23496 -14.00467 -13.88439 -13.42479 -13.37032 -13.18799 -13.11109 -13.03201 -12.69992 -12.41046 -12.16190 -12.01332 -11.83649 -11.70975 -11.44228 -11.06115 -10.48934 -9.75158 -9.31083 -8.79498 -8.39950 -6.06013 0.29136 0.46351 1.03221 1.34756 1.38278 1.48647 1.76479 1.87242 2.17752 2.27341 2.81853 2.99971 3.01017 3.52914 3.66188 3.88945 4.02021 4.05713 4.09650 4.31532 4.39509 4.45427 4.48886 4.56616 4.64065 4.72227 4.89968 4.96845 5.11454 5.28570 5.29834 5.38233 5.54023 5.60162 5.71242 5.84807 6.01845 6.30970 6.40294 7.02711 7.09196 7.34022 7.89880 8.62336 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.004640 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.083226 B = 6033.618164 C = 6566.296999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.453 5.453 3 C -0.348 4.348 4 H 0.063 0.937 5 C 0.006 3.994 6 N -0.888 5.888 7 Si 0.989 3.011 8 H -0.270 1.270 9 H -0.263 1.263 10 H -0.278 1.278 11 C 0.419 3.581 12 O -0.626 6.626 13 C 0.131 3.869 14 N -0.524 5.524 15 C 0.066 3.934 16 C -0.120 4.120 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.099 4.099 20 C 0.067 3.933 21 N -0.541 5.541 22 C 0.095 3.905 23 C 0.665 3.335 24 O -0.603 6.603 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -17.826 5.363 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.172 5.172 3 C -0.476 4.476 4 H 0.081 0.919 5 C -0.197 4.197 6 N -0.526 5.526 7 Si 0.812 3.188 8 H -0.195 1.195 9 H -0.187 1.187 10 H -0.204 1.204 11 C 0.207 3.793 12 O -0.514 6.514 13 C 0.005 3.995 14 N -0.243 5.243 15 C -0.034 4.034 16 C -0.141 4.141 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.033 4.033 21 N -0.262 5.262 22 C -0.045 4.045 23 C 0.368 3.632 24 O -0.484 6.484 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.179 0.821 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.336 -17.453 4.528 18.181 hybrid contribution 0.087 1.497 -0.572 1.605 sum 2.422 -15.955 3.956 16.616 Atomic orbital electron populations 1.21575 0.78853 1.01185 1.01298 1.43796 1.06965 1.04230 1.62214 1.19491 1.00390 0.86068 1.41685 0.91857 1.26043 0.96967 1.02707 0.94016 1.70015 1.19267 1.31128 1.32191 0.85080 0.78097 0.76847 0.78793 1.19524 1.18731 1.20351 1.21135 0.88305 0.86395 0.83486 1.90496 1.16038 1.87659 1.57181 1.21328 0.89625 0.81764 1.06734 1.44679 1.42838 1.31231 1.05542 1.18557 0.99351 0.95721 0.89789 1.20384 1.03286 1.02001 0.88416 1.21274 0.96016 0.94857 1.00263 1.21343 0.98312 0.98233 0.94376 1.20483 1.00218 0.99638 0.91629 1.18506 1.01792 1.00123 0.82897 1.45080 1.42263 1.32945 1.05958 1.22021 0.96787 0.92780 0.92865 1.16217 0.81383 0.81326 0.84318 1.90925 1.67952 1.70850 1.18656 0.92556 0.91951 0.91668 0.91325 0.86564 0.84470 0.85886 0.82113 0.80859 0.81957 0.89260 0.91092 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.01 8.45 127.77 1.08 6.09 16 2 N -0.45 -24.33 3.01 -658.90 -1.98 -26.32 16 3 C -0.35 -20.55 9.24 84.04 0.78 -19.78 16 4 H 0.06 4.06 7.45 -2.91 -0.02 4.04 16 5 C 0.01 0.30 5.04 84.93 0.43 0.73 16 6 N -0.89 -46.63 10.83 21.66 0.23 -46.39 16 7 Si 0.99 43.15 29.57 68.60 2.03 45.18 16 8 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.42 22.12 7.70 87.66 0.67 22.79 16 12 O -0.63 -38.87 16.14 -3.06 -0.05 -38.92 16 13 C 0.13 5.30 5.06 85.63 0.43 5.74 16 14 N -0.52 -21.44 2.27 -652.51 -1.48 -22.92 16 15 C 0.07 2.30 6.83 38.39 0.26 2.56 16 16 C -0.12 -3.45 10.02 22.34 0.22 -3.23 16 17 C -0.10 -2.10 10.03 22.29 0.22 -1.88 16 18 C -0.10 -1.67 10.03 22.29 0.22 -1.45 16 19 C -0.10 -1.93 10.02 22.34 0.22 -1.71 16 20 C 0.07 1.99 6.83 38.39 0.26 2.25 16 21 N -0.54 -17.70 3.19 -671.88 -2.14 -19.84 16 22 C 0.10 2.07 11.00 127.77 1.41 3.47 16 23 C 0.66 28.35 8.45 179.14 1.51 29.87 16 24 O -0.60 -29.64 17.48 -4.30 -0.08 -29.71 16 25 H 0.06 2.44 7.83 -2.39 -0.02 2.42 16 26 H 0.06 2.92 6.80 -2.39 -0.02 2.91 16 27 H 0.06 2.32 6.61 -2.39 -0.02 2.30 16 28 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.12 4.42 7.30 -2.39 -0.02 4.40 16 30 H 0.14 4.53 8.11 -2.39 -0.02 4.51 16 31 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 37 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -84.16 321.47 5.35 -78.80 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.09 Total: 14.66 kcal Atomic # 6 Polarization: 37.73 SS G_CDS: 7.73 Total: 45.46 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.37 Total: -115.47 kcal Atomic # 8 Polarization: -68.51 SS G_CDS: -0.12 Total: -68.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -84.16 5.35 -78.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299544141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.266 kcal (2) G-P(sol) polarization free energy of solvation -84.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds