Wall clock time and date at job start Tue Mar 31 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48502 * 109.46949 * 270.00439 * 3 2 1 5 5 H 1.48503 * 109.47145 * 29.99782 * 3 2 1 6 6 H 1.48492 * 109.47681 * 149.99884 * 3 2 1 7 7 C 1.38955 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99772 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99811 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99663 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99991 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47068 * 180.02562 * 12 10 9 14 14 C 1.46306 * 111.00343 * 170.00009 * 13 12 10 15 15 C 1.52090 * 111.63666 * 189.57225 * 14 13 12 16 16 N 1.46311 * 111.01631 * 315.02943 * 15 14 13 17 17 C 1.35167 * 119.20101 * 76.86821 * 16 15 14 18 18 O 1.21606 * 121.04657 * 174.99266 * 17 16 15 19 19 C 1.47473 * 117.90677 * 354.95989 * 17 16 15 20 20 C 1.39439 * 120.90230 * 131.70008 * 19 17 16 21 21 C 1.37869 * 119.72647 * 181.12483 * 20 19 17 22 22 C 1.38610 * 120.38443 * 0.09232 * 21 20 19 23 23 C 1.38041 * 120.53165 * 359.41055 * 22 21 20 24 24 C 1.38706 * 111.00246 * 43.83533 * 13 12 10 25 25 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00155 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47397 * 60.00241 * 12 10 9 28 28 H 1.09000 * 109.47439 * 300.00302 * 12 10 9 29 29 H 1.08997 * 109.04710 * 310.13207 * 14 13 12 30 30 H 1.09004 * 109.04390 * 69.01378 * 14 13 12 31 31 H 1.09005 * 109.17252 * 75.42825 * 15 14 13 32 32 H 1.09000 * 109.16983 * 194.68929 * 15 14 13 33 33 H 0.97000 * 120.40257 * 256.88335 * 16 15 14 34 34 H 1.07999 * 120.14015 * 1.10836 * 20 19 17 35 35 H 1.07999 * 119.80874 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.73411 * 179.43369 * 22 21 20 37 37 H 1.08001 * 120.04664 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1983 -5.9794 0.0016 14 6 1.5167 -7.2520 0.2394 15 6 2.5062 -8.3826 0.4755 16 7 3.5960 -8.3383 -0.4997 17 6 4.5812 -7.4257 -0.3466 18 8 5.5484 -7.4173 -1.0836 19 6 4.4459 -6.4399 0.7419 20 6 5.5026 -6.1892 1.6164 21 6 5.3419 -5.2795 2.6398 22 6 4.1364 -4.6153 2.8046 23 6 3.0850 -4.8458 1.9405 24 6 3.2313 -5.7499 0.8984 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6168 -4.9209 -0.8886 28 1 0.6174 -4.9204 0.8913 29 1 0.8739 -7.1532 1.1141 30 1 0.9012 -7.4931 -0.6273 31 1 2.9205 -8.2918 1.4797 32 1 1.9869 -9.3369 0.3877 33 1 3.6113 -8.9564 -1.2471 34 1 6.4430 -6.7056 1.4928 35 1 6.1596 -5.0839 3.3177 36 1 4.0191 -3.9116 3.6155 37 1 2.1493 -4.3237 2.0759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331460593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:34 Heat of formation + Delta-G solvation = -9.339178 kcal Electronic energy + Delta-G solvation = -23535.531112 eV Core-core repulsion = 20085.741310 eV Total energy + Delta-G solvation = -3449.789803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96890 -38.85377 -37.39219 -36.76941 -34.63082 -33.83704 -31.37183 -30.71588 -30.18382 -29.02391 -26.40734 -24.39367 -24.09301 -22.65586 -20.69467 -20.15541 -19.31066 -17.97200 -17.38831 -16.75462 -16.33735 -16.11912 -15.65370 -14.84622 -14.66024 -14.45864 -14.28163 -13.94256 -13.82189 -13.51290 -13.36441 -12.85514 -12.76991 -12.25940 -12.00106 -11.78639 -11.58952 -11.44486 -11.40557 -11.07414 -10.80170 -10.43498 -10.28080 -9.80393 -9.64613 -9.18063 -9.04802 -8.60584 -8.34526 -8.00547 -7.34910 -6.49044 -3.89407 1.46248 1.83972 3.05742 3.13905 3.23624 3.29020 3.36477 3.69582 3.79492 4.12691 4.14688 4.63130 4.78646 4.88330 4.92495 5.15849 5.20648 5.32628 5.38157 5.41108 5.46631 5.61789 5.71827 5.78786 5.87210 6.04010 6.11138 6.28597 6.54563 6.61282 6.90905 6.94994 7.09880 7.14227 7.28514 7.49379 7.59092 7.96675 8.44626 8.51094 9.09864 9.43053 9.93384 10.68257 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.005038 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.084901 B = 5556.287498 C = 6046.666607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.429 3.571 11 O -0.559 6.559 12 C 0.041 3.959 13 N -0.489 5.489 14 C 0.041 3.959 15 C 0.112 3.888 16 N -0.724 5.724 17 C 0.588 3.412 18 O -0.539 6.539 19 C -0.153 4.153 20 C -0.066 4.066 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.118 4.118 24 C 0.184 3.816 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -15.251 5.670 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.193 5.193 10 C 0.214 3.786 11 O -0.442 6.442 12 C -0.089 4.089 13 N -0.206 5.206 14 C -0.085 4.085 15 C -0.014 4.014 16 N -0.377 5.377 17 C 0.377 3.623 18 O -0.416 6.416 19 C -0.158 4.158 20 C -0.085 4.085 21 C -0.167 4.167 22 C -0.102 4.102 23 C -0.138 4.138 24 C 0.087 3.913 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.366 -15.004 4.940 15.801 hybrid contribution -0.832 1.044 0.188 1.348 sum -0.466 -13.960 5.128 14.880 Atomic orbital electron populations 1.69607 1.05955 1.28298 1.50238 1.25260 0.95619 0.99756 0.97094 0.85858 0.79268 0.80702 0.78517 1.20331 1.20886 1.19348 1.19701 0.93397 0.82010 1.47641 0.87820 1.41810 1.09140 1.04445 1.63901 1.19566 0.88602 0.84742 0.85688 1.90680 1.13260 1.85862 1.54424 1.22040 0.94019 0.90321 1.02528 1.58003 1.11158 1.02501 1.48963 1.22467 0.96307 0.87918 1.01824 1.21327 0.88358 0.98310 0.93433 1.45734 1.24495 1.37388 1.30035 1.18294 0.81095 0.79543 0.83413 1.90786 1.31578 1.72572 1.46691 1.19329 0.94157 1.02975 0.99340 1.20749 0.96529 0.97406 0.93824 1.20831 0.97681 0.98645 0.99585 1.20962 0.93003 0.97739 0.98537 1.21173 1.00108 0.98914 0.93650 1.18287 0.90452 0.94518 0.88058 0.91784 0.77464 0.88353 0.92207 0.92839 0.89559 0.90648 0.88743 0.76381 0.86035 0.86311 0.86431 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -13.49 5.29 -10.97 -0.06 -13.54 16 10 C 0.43 9.65 5.81 -10.99 -0.06 9.59 16 11 O -0.56 -14.65 12.35 5.55 0.07 -14.58 16 12 C 0.04 0.69 5.15 -4.98 -0.03 0.66 16 13 N -0.49 -7.95 4.18 -173.34 -0.72 -8.68 16 14 C 0.04 0.45 5.62 -4.61 -0.03 0.42 16 15 C 0.11 1.05 6.24 -4.61 -0.03 1.02 16 16 N -0.72 -9.12 5.42 -61.87 -0.34 -9.45 16 17 C 0.59 10.39 7.23 -12.32 -0.09 10.30 16 18 O -0.54 -11.48 17.94 5.27 0.09 -11.38 16 19 C -0.15 -2.75 4.73 -104.81 -0.50 -3.25 16 20 C -0.07 -1.09 9.78 -39.27 -0.38 -1.48 16 21 C -0.15 -2.32 10.02 -39.58 -0.40 -2.72 16 22 C -0.08 -1.40 10.02 -39.52 -0.40 -1.79 16 23 C -0.12 -2.14 6.54 -39.47 -0.26 -2.40 16 24 C 0.18 3.31 3.11 -83.69 -0.26 3.05 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 27 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 29 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.74 7.25 -51.93 -0.38 0.37 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 4.23 8.95 -40.82 -0.37 3.86 16 34 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.12 2.20 5.62 -52.49 -0.30 1.90 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -34.45 307.54 -7.48 -41.93 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.20 Total: 12.62 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.66 Total: 5.74 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.39 Total: -54.78 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.16 Total: -25.96 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.45 -7.48 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331460593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.591 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds