Wall clock time and date at job start Tue Mar 31 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48502 * 109.46949 * 270.00439 * 3 2 1 5 5 H 1.48503 * 109.47145 * 29.99782 * 3 2 1 6 6 H 1.48492 * 109.47681 * 149.99884 * 3 2 1 7 7 C 1.38955 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99772 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99811 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99663 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99991 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47068 * 180.02562 * 12 10 9 14 14 C 1.46306 * 111.00343 * 170.00009 * 13 12 10 15 15 C 1.52090 * 111.63666 * 189.57225 * 14 13 12 16 16 N 1.46311 * 111.01631 * 315.02943 * 15 14 13 17 17 C 1.35167 * 119.20101 * 76.86821 * 16 15 14 18 18 O 1.21606 * 121.04657 * 174.99266 * 17 16 15 19 19 C 1.47473 * 117.90677 * 354.95989 * 17 16 15 20 20 C 1.39439 * 120.90230 * 131.70008 * 19 17 16 21 21 C 1.37869 * 119.72647 * 181.12483 * 20 19 17 22 22 C 1.38610 * 120.38443 * 0.09232 * 21 20 19 23 23 C 1.38041 * 120.53165 * 359.41055 * 22 21 20 24 24 C 1.38706 * 111.00246 * 43.83533 * 13 12 10 25 25 H 0.97002 * 119.99876 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00155 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47397 * 60.00241 * 12 10 9 28 28 H 1.09000 * 109.47439 * 300.00302 * 12 10 9 29 29 H 1.08997 * 109.04710 * 310.13207 * 14 13 12 30 30 H 1.09004 * 109.04390 * 69.01378 * 14 13 12 31 31 H 1.09005 * 109.17252 * 75.42825 * 15 14 13 32 32 H 1.09000 * 109.16983 * 194.68929 * 15 14 13 33 33 H 0.97000 * 120.40257 * 256.88335 * 16 15 14 34 34 H 1.07999 * 120.14015 * 1.10836 * 20 19 17 35 35 H 1.07999 * 119.80874 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.73411 * 179.43369 * 22 21 20 37 37 H 1.08001 * 120.04664 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1983 -5.9794 0.0016 14 6 1.5167 -7.2520 0.2394 15 6 2.5062 -8.3826 0.4755 16 7 3.5960 -8.3383 -0.4997 17 6 4.5812 -7.4257 -0.3466 18 8 5.5484 -7.4173 -1.0836 19 6 4.4459 -6.4399 0.7419 20 6 5.5026 -6.1892 1.6164 21 6 5.3419 -5.2795 2.6398 22 6 4.1364 -4.6153 2.8046 23 6 3.0850 -4.8458 1.9405 24 6 3.2313 -5.7499 0.8984 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6168 -4.9209 -0.8886 28 1 0.6174 -4.9204 0.8913 29 1 0.8739 -7.1532 1.1141 30 1 0.9012 -7.4931 -0.6273 31 1 2.9205 -8.2918 1.4797 32 1 1.9869 -9.3369 0.3877 33 1 3.6113 -8.9564 -1.2471 34 1 6.4430 -6.7056 1.4928 35 1 6.1596 -5.0839 3.3177 36 1 4.0191 -3.9116 3.6155 37 1 2.1493 -4.3237 2.0759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331460593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:34 Heat of formation + Delta-G solvation = -36.601156 kcal Electronic energy + Delta-G solvation = -23536.713280 eV Core-core repulsion = 20085.741310 eV Total energy + Delta-G solvation = -3450.971971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25071 -40.37800 -38.91871 -37.95408 -36.15798 -35.47287 -33.31586 -31.99917 -31.32579 -30.33122 -27.85397 -26.09341 -25.33742 -23.80806 -21.95420 -21.40337 -20.97382 -19.89646 -18.57432 -17.95186 -17.79447 -17.42412 -17.03459 -16.47342 -16.11519 -15.93180 -15.65286 -15.51470 -15.11703 -14.86968 -14.65403 -14.23886 -14.08082 -13.61128 -13.35995 -13.28401 -13.15180 -12.87758 -12.65996 -12.43453 -12.35241 -12.14351 -12.03399 -11.52820 -11.12907 -10.64113 -10.17460 -10.10721 -10.05248 -9.59739 -8.68819 -8.47865 -5.95000 0.15582 0.55687 1.35408 1.40536 1.52012 1.74003 2.01921 2.23640 2.34527 2.60174 2.81743 3.18194 3.19548 3.69641 3.86003 4.01794 4.07238 4.15436 4.20118 4.36730 4.46736 4.50133 4.53656 4.63309 4.66488 4.79674 4.88917 5.00772 5.27741 5.39402 5.41021 5.62237 5.78373 5.88721 5.97715 6.07251 6.12804 6.34858 6.58437 7.12074 7.24247 7.53332 8.09153 8.69048 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.005038 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.084901 B = 5556.287498 C = 6046.666607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.986 3.014 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.326 4.326 8 H 0.075 0.925 9 N -0.567 5.567 10 C 0.431 3.569 11 O -0.599 6.599 12 C 0.052 3.948 13 N -0.508 5.508 14 C 0.034 3.966 15 C 0.108 3.892 16 N -0.706 5.706 17 C 0.580 3.420 18 O -0.590 6.590 19 C -0.176 4.176 20 C -0.075 4.075 21 C -0.149 4.149 22 C -0.093 4.093 23 C -0.140 4.140 24 C 0.183 3.817 25 H 0.277 0.723 26 H 0.397 0.603 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.412 0.588 34 H 0.132 0.868 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -16.476 6.180 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.208 4.208 3 Si 0.811 3.189 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.456 4.456 8 H 0.093 0.907 9 N -0.205 5.205 10 C 0.219 3.781 11 O -0.484 6.484 12 C -0.078 4.078 13 N -0.225 5.225 14 C -0.090 4.090 15 C -0.016 4.016 16 N -0.357 5.357 17 C 0.369 3.631 18 O -0.472 6.472 19 C -0.181 4.181 20 C -0.094 4.094 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.161 4.161 24 C 0.085 3.915 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.249 0.751 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.035 -16.281 5.461 17.204 hybrid contribution -0.433 1.326 0.053 1.396 sum -1.468 -14.955 5.514 16.006 Atomic orbital electron populations 1.69652 1.06624 1.29216 1.50352 1.25911 0.96452 1.02053 0.96406 0.85024 0.77982 0.77458 0.78485 1.20063 1.19375 1.19995 1.19550 0.92459 0.83913 1.49641 0.90702 1.41827 1.09228 1.04418 1.64998 1.20568 0.88444 0.86138 0.82971 1.90661 1.15434 1.86918 1.55390 1.21973 0.93655 0.87227 1.04973 1.58118 1.11378 1.04181 1.48855 1.22747 0.96743 0.85483 1.04063 1.21675 0.87352 1.00341 0.92269 1.45664 1.23824 1.35695 1.30532 1.18437 0.81505 0.80231 0.82925 1.90748 1.33822 1.74212 1.48400 1.19566 0.94668 1.03891 0.99988 1.21041 0.96795 0.97631 0.93940 1.21134 0.98104 0.97807 0.99695 1.21268 0.93227 0.97942 0.98793 1.21232 1.00304 0.99805 0.94787 1.18372 0.91052 0.94154 0.87949 0.91317 0.76922 0.86142 0.89169 0.90323 0.87266 0.91051 0.83599 0.75070 0.85019 0.83390 0.85084 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.33 -18.09 9.68 84.04 0.81 -17.28 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 N -0.57 -27.80 5.29 -306.99 -1.62 -29.42 16 10 C 0.43 19.49 5.81 87.66 0.51 20.00 16 11 O -0.60 -32.11 12.35 -3.07 -0.04 -32.15 16 12 C 0.05 1.62 5.15 85.56 0.44 2.07 16 13 N -0.51 -15.53 4.18 -702.32 -2.93 -18.47 16 14 C 0.03 0.61 5.62 86.12 0.48 1.10 16 15 C 0.11 1.64 6.24 86.11 0.54 2.18 16 16 N -0.71 -16.33 5.42 -467.68 -2.53 -18.86 16 17 C 0.58 20.36 7.23 86.62 0.63 20.98 16 18 O -0.59 -25.63 17.94 -4.05 -0.07 -25.71 16 19 C -0.18 -6.31 4.73 -19.99 -0.09 -6.40 16 20 C -0.07 -2.49 9.78 22.47 0.22 -2.27 16 21 C -0.15 -4.57 10.02 22.27 0.22 -4.35 16 22 C -0.09 -3.12 10.02 22.31 0.22 -2.90 16 23 C -0.14 -5.09 6.54 22.34 0.15 -4.94 16 24 C 0.18 6.44 3.11 38.74 0.12 6.56 16 25 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.40 18.32 7.90 -92.71 -0.73 17.59 16 27 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.09 2.31 7.32 -2.39 -0.02 2.30 16 29 H 0.08 1.08 7.90 -2.39 -0.02 1.06 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.21 7.25 -2.38 -0.02 1.19 16 32 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.41 7.75 8.95 -92.71 -0.83 6.93 16 34 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.11 4.07 5.62 -2.91 -0.02 4.06 16 Total: -1.00 -77.71 307.54 -0.61 -78.32 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.43 Total: 34.64 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 4.72 Total: 14.79 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -6.81 Total: -114.76 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.11 Total: -57.85 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -77.71 -0.61 -78.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331460593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.716 kcal (2) G-P(sol) polarization free energy of solvation -77.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds