Wall clock time and date at job start Tue Mar 31 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48505 * 109.47368 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47114 * 120.00298 * 3 2 1 6 6 H 1.48499 * 109.47376 * 240.00365 * 3 2 1 7 7 C 1.39896 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00110 * 150.42258 * 7 2 1 9 9 C 1.41161 * 119.99548 * 330.41986 * 7 2 1 10 10 C 1.40870 * 120.16279 * 333.06662 * 9 7 2 11 11 C 1.36376 * 119.82579 * 179.76437 * 10 9 7 12 12 C 1.39488 * 120.16646 * 0.49482 * 11 10 9 13 13 N 1.39238 * 119.83093 * 179.75734 * 12 11 10 14 14 C 1.34784 * 120.00193 * 33.58112 * 13 12 11 15 15 O 1.21585 * 119.99570 * 4.76211 * 14 13 12 16 16 N 1.34770 * 120.00063 * 184.75727 * 14 13 12 17 17 C 1.46504 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.85523 * 328.79127 * 17 16 14 19 19 C 1.54478 * 110.96657 * 92.62246 * 17 16 14 20 20 N 1.46767 * 105.47542 * 92.70778 * 19 17 16 21 21 C 1.34422 * 111.29822 * 17.00984 * 20 19 17 22 22 O 1.21284 * 124.94066 * 179.63719 * 21 20 19 23 23 C 1.51287 * 110.11749 * 359.59544 * 21 20 19 24 24 C 1.39475 * 120.33366 * 359.78089 * 12 11 10 25 25 C 1.36376 * 120.17148 * 359.95752 * 24 12 11 26 26 H 0.96996 * 120.00402 * 173.61020 * 1 2 3 27 27 H 1.08001 * 120.08584 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.91716 * 180.25835 * 11 10 9 29 29 H 0.97000 * 120.00149 * 213.57580 * 13 12 11 30 30 H 0.96998 * 120.00396 * 0.02562 * 16 14 13 31 31 H 1.09003 * 110.24505 * 211.69993 * 19 17 16 32 32 H 1.08995 * 110.25124 * 333.70444 * 19 17 16 33 33 H 0.97000 * 124.35024 * 197.03568 * 20 19 17 34 34 H 1.08996 * 110.48226 * 225.06977 * 23 21 20 35 35 H 1.09002 * 110.59237 * 102.47916 * 23 21 20 36 36 H 1.08006 * 119.91516 * 179.97438 * 24 12 11 37 37 H 1.07994 * 120.08883 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 2.9827 -1.2722 -0.4622 9 6 1.4404 -2.3546 0.6024 10 6 0.5124 -2.2135 1.6529 11 6 -0.0356 -3.3224 2.2272 12 6 0.3284 -4.5939 1.7841 13 7 -0.2317 -5.7214 2.3789 14 6 -1.5009 -5.6847 2.8310 15 8 -2.1850 -4.6974 2.6425 16 7 -2.0116 -6.7423 3.4920 17 6 -3.3914 -6.7026 3.9830 18 1 -3.6809 -5.6849 4.2449 19 6 -4.3646 -7.3057 2.9460 20 7 -4.4922 -8.7226 3.3065 21 6 -4.0634 -8.9480 4.5604 22 8 -4.0640 -10.0286 5.1110 23 6 -3.5789 -7.6578 5.1844 24 6 1.2509 -4.7416 0.7484 25 6 1.8034 -3.6420 0.1607 26 1 -0.4850 -0.8348 -0.0935 27 1 0.2325 -1.2297 1.9996 28 1 -0.7503 -3.2159 3.0298 29 1 0.2915 -6.5333 2.4678 30 1 -1.4657 -7.5298 3.6427 31 1 -5.3346 -6.8121 3.0075 32 1 -3.9537 -7.2076 1.9413 33 1 -4.8408 -9.4085 2.7157 34 1 -2.6307 -7.8152 5.6983 35 1 -4.3245 -7.2618 5.8739 36 1 1.5282 -5.7294 0.4109 37 1 2.5179 -3.7579 -0.6408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336500848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:30 Heat of formation + Delta-G solvation = -44.803216 kcal Electronic energy + Delta-G solvation = -21915.052206 eV Core-core repulsion = 18463.724568 eV Total energy + Delta-G solvation = -3451.327639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87266 -39.70560 -37.72838 -36.69872 -34.67711 -33.97545 -32.96163 -30.53933 -29.63821 -28.61071 -27.54325 -24.81342 -22.52916 -21.48039 -21.01685 -20.89020 -20.21059 -18.28049 -17.93294 -17.61501 -17.04809 -16.26033 -15.35831 -15.16292 -14.70513 -14.50430 -14.34620 -14.03907 -13.89085 -13.61339 -13.34154 -12.78384 -12.54286 -12.38872 -12.26168 -12.10565 -11.91463 -11.40182 -11.09112 -11.04125 -10.40220 -10.19055 -10.09554 -9.98441 -9.61667 -9.46126 -9.19596 -9.11567 -8.76036 -7.74944 -7.28648 -7.06884 -4.35995 2.27227 2.58372 2.82043 2.90638 3.04700 3.15598 3.21325 3.37011 3.54353 3.99677 4.02921 4.17144 4.44822 4.52157 4.56603 4.89349 5.13653 5.26662 5.45198 5.47832 5.53589 6.00826 6.22966 6.36730 6.43454 6.62741 6.66254 6.67897 6.90476 7.08165 7.12235 7.40005 7.65043 7.75675 7.80428 7.84376 7.91435 8.20205 8.29392 8.34017 8.73037 8.86080 8.97448 10.03666 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.040512 B = 0.002955 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.988285 B = 9472.623191 C = 9799.550213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.094 3.906 10 C -0.209 4.209 11 C -0.065 4.065 12 C -0.003 4.003 13 N -0.663 5.663 14 C 0.695 3.305 15 O -0.574 6.574 16 N -0.745 5.745 17 C 0.156 3.844 18 H 0.122 0.878 19 C 0.084 3.916 20 N -0.729 5.729 21 C 0.517 3.483 22 O -0.538 6.538 23 C -0.166 4.166 24 C -0.093 4.093 25 C -0.218 4.218 26 H 0.300 0.700 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.391 0.609 30 H 0.394 0.606 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -11.409 6.090 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.182 4.182 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.228 4.228 11 C -0.085 4.085 12 C -0.096 4.096 13 N -0.309 5.309 14 C 0.396 3.604 15 O -0.450 6.450 16 N -0.402 5.402 17 C 0.048 3.952 18 H 0.140 0.860 19 C -0.042 4.042 20 N -0.385 5.385 21 C 0.304 3.696 22 O -0.415 6.415 23 C -0.206 4.206 24 C -0.114 4.114 25 C -0.238 4.238 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.249 0.751 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.514 -9.298 6.355 13.011 hybrid contribution 0.486 -2.857 -0.394 2.925 sum -6.028 -12.155 5.961 14.820 Atomic orbital electron populations 1.70456 1.08306 1.34372 1.27737 1.27008 0.95569 1.04322 0.91330 0.83689 0.75768 0.73985 0.77999 1.19887 1.19960 1.20160 1.20480 1.05435 0.95011 1.34327 0.90602 1.17692 0.90502 0.92467 0.90302 1.20768 1.04868 0.97002 1.00201 1.20355 0.98092 0.91164 0.98886 1.16844 1.05700 0.84923 1.02118 1.42058 1.11483 1.15142 1.62181 1.15994 0.82060 0.83129 0.79264 1.90948 1.59574 1.32359 1.62163 1.45118 1.13926 1.18818 1.62318 1.21581 0.81258 1.01020 0.91305 0.85985 1.22720 1.00403 0.80389 1.00647 1.46264 1.65353 1.10946 1.15912 1.20868 0.76597 0.90175 0.82000 1.90770 1.56268 1.28216 1.66264 1.22702 1.05178 0.94068 0.98684 1.20067 0.98927 0.97312 0.95085 1.20505 1.07406 0.92273 1.03657 0.88710 0.87795 0.87702 0.77586 0.77227 0.89734 0.89394 0.75149 0.87177 0.86146 0.89160 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.04 12.42 55.55 0.69 -20.35 16 2 C 0.04 1.04 4.80 -17.34 -0.08 0.95 16 3 Si 1.06 21.39 30.02 -169.99 -5.10 16.29 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.52 -13.80 8.92 -37.85 -0.34 -14.14 16 8 H 0.08 1.93 7.99 -52.49 -0.42 1.51 16 9 C 0.09 2.45 5.23 -106.80 -0.56 1.89 16 10 C -0.21 -5.39 8.09 -39.26 -0.32 -5.71 16 11 C -0.06 -1.55 8.57 -39.79 -0.34 -1.89 16 12 C 0.00 -0.07 6.29 -83.57 -0.53 -0.60 16 13 N -0.66 -10.86 5.32 -14.10 -0.07 -10.94 16 14 C 0.69 11.12 8.30 -86.92 -0.72 10.40 16 15 O -0.57 -11.68 13.63 5.29 0.07 -11.61 16 16 N -0.74 -7.95 5.12 -57.08 -0.29 -8.25 16 17 C 0.16 1.39 3.53 -66.30 -0.23 1.15 16 18 H 0.12 1.20 7.54 -51.93 -0.39 0.81 16 19 C 0.08 0.67 7.51 -3.12 -0.02 0.65 16 20 N -0.73 -5.84 6.24 -59.20 -0.37 -6.21 16 21 C 0.52 5.19 8.43 -10.86 -0.09 5.10 16 22 O -0.54 -7.64 18.03 5.55 0.10 -7.54 16 23 C -0.17 -1.23 6.49 -26.74 -0.17 -1.41 16 24 C -0.09 -1.99 9.89 -39.79 -0.39 -2.38 16 25 C -0.22 -5.20 9.74 -39.26 -0.38 -5.58 16 26 H 0.30 8.33 7.15 -40.82 -0.29 8.04 16 27 H 0.10 2.79 6.77 -52.49 -0.36 2.44 16 28 H 0.10 2.50 6.39 -52.49 -0.34 2.16 16 29 H 0.39 4.93 8.83 -40.82 -0.36 4.57 16 30 H 0.39 3.32 8.68 -40.82 -0.35 2.97 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.41 2.80 8.96 -40.82 -0.37 2.43 16 34 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -32.66 318.76 -8.56 -41.22 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.20 Total: 14.13 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -4.18 Total: -11.56 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.05 Total: -45.74 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.10 Total: 16.29 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.66 -8.56 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336500848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.584 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds