Wall clock time and date at job start Tue Mar 31 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48505 * 109.47368 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47114 * 120.00298 * 3 2 1 6 6 H 1.48499 * 109.47376 * 240.00365 * 3 2 1 7 7 C 1.39896 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00110 * 150.42258 * 7 2 1 9 9 C 1.41161 * 119.99548 * 330.41986 * 7 2 1 10 10 C 1.40870 * 120.16279 * 333.06662 * 9 7 2 11 11 C 1.36376 * 119.82579 * 179.76437 * 10 9 7 12 12 C 1.39488 * 120.16646 * 0.49482 * 11 10 9 13 13 N 1.39238 * 119.83093 * 179.75734 * 12 11 10 14 14 C 1.34784 * 120.00193 * 33.58112 * 13 12 11 15 15 O 1.21585 * 119.99570 * 4.76211 * 14 13 12 16 16 N 1.34770 * 120.00063 * 184.75727 * 14 13 12 17 17 C 1.46504 * 119.99894 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.85523 * 328.79127 * 17 16 14 19 19 C 1.54478 * 110.96657 * 92.62246 * 17 16 14 20 20 N 1.46767 * 105.47542 * 92.70778 * 19 17 16 21 21 C 1.34422 * 111.29822 * 17.00984 * 20 19 17 22 22 O 1.21284 * 124.94066 * 179.63719 * 21 20 19 23 23 C 1.51287 * 110.11749 * 359.59544 * 21 20 19 24 24 C 1.39475 * 120.33366 * 359.78089 * 12 11 10 25 25 C 1.36376 * 120.17148 * 359.95752 * 24 12 11 26 26 H 0.96996 * 120.00402 * 173.61020 * 1 2 3 27 27 H 1.08001 * 120.08584 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.91716 * 180.25835 * 11 10 9 29 29 H 0.97000 * 120.00149 * 213.57580 * 13 12 11 30 30 H 0.96998 * 120.00396 * 0.02562 * 16 14 13 31 31 H 1.09003 * 110.24505 * 211.69993 * 19 17 16 32 32 H 1.08995 * 110.25124 * 333.70444 * 19 17 16 33 33 H 0.97000 * 124.35024 * 197.03568 * 20 19 17 34 34 H 1.08996 * 110.48226 * 225.06977 * 23 21 20 35 35 H 1.09002 * 110.59237 * 102.47916 * 23 21 20 36 36 H 1.08006 * 119.91516 * 179.97438 * 24 12 11 37 37 H 1.07994 * 120.08883 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 2.9827 -1.2722 -0.4622 9 6 1.4404 -2.3546 0.6024 10 6 0.5124 -2.2135 1.6529 11 6 -0.0356 -3.3224 2.2272 12 6 0.3284 -4.5939 1.7841 13 7 -0.2317 -5.7214 2.3789 14 6 -1.5009 -5.6847 2.8310 15 8 -2.1850 -4.6974 2.6425 16 7 -2.0116 -6.7423 3.4920 17 6 -3.3914 -6.7026 3.9830 18 1 -3.6809 -5.6849 4.2449 19 6 -4.3646 -7.3057 2.9460 20 7 -4.4922 -8.7226 3.3065 21 6 -4.0634 -8.9480 4.5604 22 8 -4.0640 -10.0286 5.1110 23 6 -3.5789 -7.6578 5.1844 24 6 1.2509 -4.7416 0.7484 25 6 1.8034 -3.6420 0.1607 26 1 -0.4850 -0.8348 -0.0935 27 1 0.2325 -1.2297 1.9996 28 1 -0.7503 -3.2159 3.0298 29 1 0.2915 -6.5333 2.4678 30 1 -1.4657 -7.5298 3.6427 31 1 -5.3346 -6.8121 3.0075 32 1 -3.9537 -7.2076 1.9413 33 1 -4.8408 -9.4085 2.7157 34 1 -2.6307 -7.8152 5.6983 35 1 -4.3245 -7.2618 5.8739 36 1 1.5282 -5.7294 0.4109 37 1 2.5179 -3.7579 -0.6408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336500848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:29 Heat of formation + Delta-G solvation = -69.751551 kcal Electronic energy + Delta-G solvation = -21916.134047 eV Core-core repulsion = 18463.724568 eV Total energy + Delta-G solvation = -3452.409480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84244 -40.93954 -39.37092 -37.72673 -36.33482 -35.11721 -34.54672 -31.63146 -31.37785 -30.23181 -28.34581 -26.58023 -23.85129 -23.16814 -22.32489 -21.74228 -21.49960 -19.81902 -19.54006 -18.61004 -18.13152 -17.44115 -16.55604 -16.37052 -16.10008 -15.86854 -15.72059 -15.45484 -15.05544 -14.70699 -14.49651 -14.30184 -14.21925 -13.85324 -13.50177 -13.17322 -12.98583 -12.89937 -12.76987 -12.66314 -11.96371 -11.87146 -11.62573 -11.19148 -11.02837 -10.96240 -10.57704 -10.41004 -10.05047 -9.63181 -9.21880 -8.87487 -6.32454 0.82047 1.00078 1.49838 1.52209 1.60082 1.69616 1.81800 2.15499 2.35992 2.36956 2.71767 3.27389 3.32271 3.44376 3.58658 3.78764 4.21514 4.31505 4.38311 4.55226 4.65303 4.72798 4.81926 4.82299 5.01313 5.09391 5.32498 5.43363 5.47285 5.59194 5.73829 5.78057 5.87225 5.96469 6.00034 6.12714 6.29448 6.42539 6.82109 6.97939 7.09644 7.17857 7.63213 8.04327 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.040512 B = 0.002955 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.988285 B = 9472.623191 C = 9799.550213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.005 3.995 3 Si 1.114 2.886 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.079 4.079 12 C 0.023 3.977 13 N -0.657 5.657 14 C 0.697 3.303 15 O -0.618 6.618 16 N -0.722 5.722 17 C 0.151 3.849 18 H 0.117 0.883 19 C 0.090 3.910 20 N -0.718 5.718 21 C 0.515 3.485 22 O -0.583 6.583 23 C -0.151 4.151 24 C -0.090 4.090 25 C -0.226 4.226 26 H 0.280 0.720 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.414 0.586 30 H 0.410 0.590 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -13.091 6.587 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.212 4.212 3 Si 0.931 3.069 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.590 4.590 8 H 0.093 0.907 9 C 0.061 3.939 10 C -0.245 4.245 11 C -0.099 4.099 12 C -0.071 4.071 13 N -0.305 5.305 14 C 0.397 3.603 15 O -0.497 6.497 16 N -0.378 5.378 17 C 0.044 3.956 18 H 0.135 0.865 19 C -0.036 4.036 20 N -0.373 5.373 21 C 0.302 3.698 22 O -0.464 6.464 23 C -0.191 4.191 24 C -0.110 4.110 25 C -0.246 4.246 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.251 0.749 30 H 0.246 0.754 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.138 0.862 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.273 -11.066 6.855 14.449 hybrid contribution 0.306 -2.601 -0.477 2.662 sum -5.967 -13.667 6.378 16.219 Atomic orbital electron populations 1.70587 1.09173 1.32932 1.30938 1.28428 0.95507 1.07629 0.89617 0.83059 0.74832 0.69811 0.79188 1.19870 1.18893 1.17887 1.20660 1.05858 0.96185 1.36261 0.90675 1.17995 0.91247 0.93829 0.90819 1.20665 1.06025 0.96695 1.01139 1.20423 0.98309 0.92054 0.99115 1.16905 1.03966 0.85484 1.00786 1.41850 1.12101 1.14623 1.61946 1.16112 0.81570 0.83519 0.79069 1.90940 1.60623 1.34464 1.63709 1.44916 1.14755 1.17760 1.60414 1.21739 0.80162 1.01339 0.92319 0.86501 1.22689 1.01047 0.80197 0.99669 1.46252 1.64334 1.11188 1.15496 1.21214 0.76091 0.90199 0.82275 1.90757 1.58350 1.29987 1.67312 1.22675 1.06296 0.92035 0.98106 1.20420 0.97837 0.98612 0.94147 1.20769 1.07602 0.92184 1.04053 0.90886 0.90217 0.88111 0.74860 0.75389 0.87831 0.90264 0.74440 0.86224 0.83811 0.84759 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.57 12.42 21.82 0.27 -45.29 16 2 C 0.00 0.25 4.80 85.24 0.41 0.66 16 3 Si 1.11 43.73 30.02 68.60 2.06 45.78 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 7 C -0.56 -30.48 8.92 23.39 0.21 -30.27 16 8 H 0.08 3.93 7.99 -2.91 -0.02 3.91 16 9 C 0.06 3.44 5.23 -21.27 -0.11 3.33 16 10 C -0.23 -12.11 8.09 22.48 0.18 -11.93 16 11 C -0.08 -3.79 8.57 22.14 0.19 -3.60 16 12 C 0.02 0.92 6.29 38.57 0.24 1.17 16 13 N -0.66 -19.64 5.32 -316.78 -1.68 -21.32 16 14 C 0.70 20.74 8.30 179.05 1.49 22.23 16 15 O -0.62 -24.57 13.63 -3.99 -0.05 -24.62 16 16 N -0.72 -13.28 5.12 -452.77 -2.32 -15.61 16 17 C 0.15 2.28 3.53 46.05 0.16 2.44 16 18 H 0.12 2.04 7.54 -2.39 -0.02 2.02 16 19 C 0.09 1.20 7.51 86.83 0.65 1.85 16 20 N -0.72 -9.76 6.24 -459.79 -2.87 -12.62 16 21 C 0.51 9.14 8.43 87.90 0.74 9.88 16 22 O -0.58 -15.74 18.03 -3.04 -0.05 -15.80 16 23 C -0.15 -1.78 6.49 30.59 0.20 -1.58 16 24 C -0.09 -3.60 9.89 22.13 0.22 -3.38 16 25 C -0.23 -10.63 9.74 22.48 0.22 -10.41 16 26 H 0.28 16.51 7.15 -92.71 -0.66 15.85 16 27 H 0.08 4.57 6.77 -2.91 -0.02 4.55 16 28 H 0.10 4.90 6.39 -2.91 -0.02 4.88 16 29 H 0.41 8.73 8.83 -92.71 -0.82 7.91 16 30 H 0.41 5.38 8.68 -92.71 -0.80 4.58 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 33 H 0.42 4.79 8.96 -92.71 -0.83 3.96 16 34 H 0.12 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -74.27 318.76 -1.05 -75.32 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -1.20 Total: 33.78 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.80 Total: -19.63 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -6.60 Total: -94.84 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.11 Total: -40.42 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.06 Total: 45.78 kcal Total: -74.27 -1.05 -75.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336500848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.573 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds